Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05586

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05584 and MPMX19_05585 are separated by 293 nucleotidesMPMX19_05585 and MPMX19_05586 are separated by 21 nucleotidesMPMX19_05586 and MPMX19_05587 are separated by 236 nucleotides MPMX19_05584: MPMX19_05584 - hypothetical protein, at 294,471 to 296,171 _05584 MPMX19_05585: MPMX19_05585 - hypothetical protein, at 296,465 to 297,127 _05585 MPMX19_05586: MPMX19_05586 - hypothetical protein, at 297,149 to 297,802 _05586 MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034 _05587 Position (kb) 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 296.149 kb on - strandat 296.180 kb on - strandat 296.310 kb on - strandat 296.331 kb on + strandat 296.331 kb on + strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.357 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.735 kb on + strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.825 kb on + strandat 297.905 kb on + strandat 297.905 kb on + strandat 297.906 kb on - strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.191 kb on + strand, within MPMX19_05587at 298.192 kb on - strand, within MPMX19_05587at 298.232 kb on - strand, within MPMX19_05587at 298.550 kb on - strand, within MPMX19_05587

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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296,149 - +0.0
296,180 - -0.4
296,310 - +0.7
296,331 + -1.6
296,331 + -1.4
296,332 - -1.7
296,332 - -0.9
296,332 - +1.4
296,357 + +0.2
296,516 + -0.6
296,516 + -0.6
296,516 + -0.4
296,516 + +0.1
296,516 + -0.7
296,516 + -0.7
296,516 + -0.2
296,516 + +1.0
296,517 - +0.6
296,517 - +1.0
296,517 - +1.3
296,517 - -0.3
296,517 - -1.2
296,517 - +0.6
296,517 - -0.1
296,735 + MPMX19_05585 0.41 -0.2
296,736 - MPMX19_05585 0.41 +0.0
296,736 - MPMX19_05585 0.41 -2.9
296,736 - MPMX19_05585 0.41 +0.7
296,736 - MPMX19_05585 0.41 +0.7
296,736 - MPMX19_05585 0.41 -0.7
296,736 - MPMX19_05585 0.41 +0.6
296,894 + MPMX19_05585 0.65 -0.6
296,894 + MPMX19_05585 0.65 +0.4
296,894 + MPMX19_05585 0.65 +0.7
296,894 + MPMX19_05585 0.65 +0.6
296,894 + MPMX19_05585 0.65 +0.2
296,894 + MPMX19_05585 0.65 +1.2
296,894 + MPMX19_05585 0.65 -1.8
296,894 + MPMX19_05585 0.65 -1.7
296,894 + MPMX19_05585 0.65 +1.6
296,895 - MPMX19_05585 0.65 -0.3
296,895 - MPMX19_05585 0.65 -1.2
296,895 - MPMX19_05585 0.65 -0.1
296,895 - MPMX19_05585 0.65 +1.0
296,895 - MPMX19_05585 0.65 +0.3
296,954 + MPMX19_05585 0.74 +0.4
296,954 + MPMX19_05585 0.74 +0.7
296,954 + MPMX19_05585 0.74 +0.0
296,954 + MPMX19_05585 0.74 -0.7
296,954 + MPMX19_05585 0.74 -0.7
296,955 - MPMX19_05585 0.74 -2.1
296,955 - MPMX19_05585 0.74 -0.5
296,955 - MPMX19_05585 0.74 +0.5
296,955 - MPMX19_05585 0.74 -0.4
296,955 - MPMX19_05585 0.74 -1.5
296,955 - MPMX19_05585 0.74 +0.0
296,955 - MPMX19_05585 0.74 +0.6
296,955 - MPMX19_05585 0.74 -0.6
296,955 - MPMX19_05585 0.74 +1.4
296,955 - MPMX19_05585 0.74 -0.6
296,955 - MPMX19_05585 0.74 +1.0
296,955 - MPMX19_05585 0.74 +0.0
296,996 + MPMX19_05585 0.80 -0.1
296,996 + MPMX19_05585 0.80 -1.0
296,996 + MPMX19_05585 0.80 +0.7
296,997 - MPMX19_05585 0.80 -0.6
296,997 - MPMX19_05585 0.80 +1.5
297,035 + MPMX19_05585 0.86 +0.8
297,035 + MPMX19_05585 0.86 +1.6
297,035 + MPMX19_05585 0.86 -0.6
297,035 + MPMX19_05585 0.86 -0.3
297,035 + MPMX19_05585 0.86 -0.1
297,035 + MPMX19_05585 0.86 -0.2
297,035 + MPMX19_05585 0.86 +0.7
297,035 + MPMX19_05585 0.86 +2.3
297,035 + MPMX19_05585 0.86 -0.4
297,035 + MPMX19_05585 0.86 +0.2
297,035 + MPMX19_05585 0.86 -1.5
297,036 - MPMX19_05585 0.86 -0.4
297,036 - MPMX19_05585 0.86 +0.2
297,036 - MPMX19_05585 0.86 +0.8
297,036 - MPMX19_05585 0.86 -0.2
297,036 - MPMX19_05585 0.86 +1.0
297,036 - MPMX19_05585 0.86 -1.0
297,036 - MPMX19_05585 0.86 +1.4
297,036 - MPMX19_05585 0.86 -1.3
297,036 - MPMX19_05585 0.86 +1.0
297,642 + MPMX19_05586 0.75 +1.0
297,642 + MPMX19_05586 0.75 +2.0
297,642 + MPMX19_05586 0.75 +0.4
297,642 + MPMX19_05586 0.75 +1.2
297,642 + MPMX19_05586 0.75 +0.6
297,643 - MPMX19_05586 0.76 +2.0
297,643 - MPMX19_05586 0.76 +0.4
297,643 - MPMX19_05586 0.76 +2.6
297,643 - MPMX19_05586 0.76 -0.3
297,825 + -0.8
297,905 + -2.4
297,905 + -0.9
297,906 - -0.4
298,050 + -0.2
298,050 + +1.2
298,050 + -1.8
298,050 + -0.3
298,050 + +0.3
298,051 - -0.1
298,051 - -1.4
298,051 - -1.6
298,051 - -0.6
298,051 - +0.0
298,051 - -1.0
298,189 + MPMX19_05587 0.15 -0.9
298,189 + MPMX19_05587 0.15 +0.4
298,189 + MPMX19_05587 0.15 -1.6
298,189 + MPMX19_05587 0.15 -0.7
298,189 + MPMX19_05587 0.15 -0.1
298,189 + MPMX19_05587 0.15 -1.0
298,189 + MPMX19_05587 0.15 -0.4
298,189 + MPMX19_05587 0.15 -1.3
298,189 + MPMX19_05587 0.15 -0.5
298,189 + MPMX19_05587 0.15 +0.3
298,189 + MPMX19_05587 0.15 +1.0
298,189 + MPMX19_05587 0.15 +0.4
298,189 + MPMX19_05587 0.15 -0.2
298,189 + MPMX19_05587 0.15 -0.3
298,189 + MPMX19_05587 0.15 -0.1
298,189 + MPMX19_05587 0.15 -1.3
298,189 + MPMX19_05587 0.15 -0.6
298,189 + MPMX19_05587 0.15 +0.2
298,190 - MPMX19_05587 0.15 -1.1
298,190 - MPMX19_05587 0.15 -1.3
298,190 - MPMX19_05587 0.15 +0.2
298,190 - MPMX19_05587 0.15 +0.6
298,190 - MPMX19_05587 0.15 +1.4
298,190 - MPMX19_05587 0.15 +0.1
298,191 + MPMX19_05587 0.15 +0.9
298,192 - MPMX19_05587 0.15 +0.1
298,232 - MPMX19_05587 0.19 +1.7
298,550 - MPMX19_05587 0.51 -1.1

Or see this region's nucleotide sequence