Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05538

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05536 and MPMX19_05537 are separated by 25 nucleotidesMPMX19_05537 and MPMX19_05538 are separated by 157 nucleotidesMPMX19_05538 and MPMX19_05539 are separated by 111 nucleotides MPMX19_05536: MPMX19_05536 - dTTP/UTP pyrophosphatase, at 242,017 to 242,649 _05536 MPMX19_05537: MPMX19_05537 - Translation initiation factor IF-1, at 242,675 to 242,893 _05537 MPMX19_05538: MPMX19_05538 - hypothetical protein, at 243,051 to 244,229 _05538 MPMX19_05539: MPMX19_05539 - Sensor histidine kinase RcsC, at 244,341 to 246,692 _05539 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 242.120 kb on + strand, within MPMX19_05536at 242.913 kb on - strandat 242.930 kb on - strandat 242.930 kb on - strandat 242.930 kb on - strandat 243.064 kb on + strandat 243.065 kb on - strandat 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.337 kb on + strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.338 kb on - strand, within MPMX19_05538at 243.412 kb on + strand, within MPMX19_05538at 243.413 kb on - strand, within MPMX19_05538at 243.544 kb on + strand, within MPMX19_05538at 243.545 kb on - strand, within MPMX19_05538at 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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242,120 + MPMX19_05536 0.16 -0.7
242,913 - +0.6
242,930 - -1.4
242,930 - -0.9
242,930 - -0.3
243,064 + -0.4
243,065 - -1.1
243,337 + MPMX19_05538 0.24 +0.0
243,337 + MPMX19_05538 0.24 -1.9
243,337 + MPMX19_05538 0.24 -1.5
243,337 + MPMX19_05538 0.24 -0.2
243,337 + MPMX19_05538 0.24 -2.0
243,337 + MPMX19_05538 0.24 -0.3
243,337 + MPMX19_05538 0.24 -1.2
243,337 + MPMX19_05538 0.24 -0.5
243,337 + MPMX19_05538 0.24 -0.7
243,337 + MPMX19_05538 0.24 -0.3
243,337 + MPMX19_05538 0.24 +0.3
243,337 + MPMX19_05538 0.24 -1.5
243,337 + MPMX19_05538 0.24 +0.6
243,337 + MPMX19_05538 0.24 +0.5
243,337 + MPMX19_05538 0.24 -0.2
243,337 + MPMX19_05538 0.24 +2.0
243,337 + MPMX19_05538 0.24 -0.5
243,337 + MPMX19_05538 0.24 -0.7
243,337 + MPMX19_05538 0.24 +0.8
243,337 + MPMX19_05538 0.24 -0.5
243,337 + MPMX19_05538 0.24 -1.0
243,337 + MPMX19_05538 0.24 -1.3
243,337 + MPMX19_05538 0.24 +1.0
243,338 - MPMX19_05538 0.24 +1.4
243,338 - MPMX19_05538 0.24 -1.8
243,338 - MPMX19_05538 0.24 -0.4
243,338 - MPMX19_05538 0.24 -0.3
243,338 - MPMX19_05538 0.24 -0.8
243,338 - MPMX19_05538 0.24 +0.2
243,338 - MPMX19_05538 0.24 -0.9
243,338 - MPMX19_05538 0.24 -0.6
243,338 - MPMX19_05538 0.24 -1.3
243,338 - MPMX19_05538 0.24 -0.3
243,338 - MPMX19_05538 0.24 +0.0
243,338 - MPMX19_05538 0.24 -1.3
243,338 - MPMX19_05538 0.24 -0.6
243,338 - MPMX19_05538 0.24 -0.4
243,338 - MPMX19_05538 0.24 -0.8
243,412 + MPMX19_05538 0.31 +1.3
243,413 - MPMX19_05538 0.31 -0.2
243,544 + MPMX19_05538 0.42 -0.7
243,545 - MPMX19_05538 0.42 -0.6
244,326 + +0.4
244,326 + -1.6
244,326 + +0.6
244,326 + -0.2
244,326 + -0.8
244,326 + -0.6
244,326 + +0.4
244,326 + +0.6
244,326 + -0.1
244,326 + +0.9
244,326 + -1.1
244,326 + -0.8
244,326 + +0.4
244,326 + -0.6
244,326 + -0.2
244,326 + -0.3
244,326 + -0.2
244,326 + -0.9
244,326 + -0.2
244,327 - -0.7
244,327 - -0.5
244,327 - -0.5
244,327 - -0.8
244,327 - -0.2
244,327 - -0.2
244,327 - -0.2
244,327 - -1.5
244,327 - +0.2
244,327 - +1.0
244,328 + +0.0
244,328 + -0.3
244,328 + -0.8
244,328 + -0.8
244,328 + -1.0
244,328 + +0.5
244,328 + -0.8
244,328 + +2.0
244,328 + -2.6
244,328 + -1.9
244,328 + +0.8
244,328 + +1.1
244,328 + +0.1
244,328 + -0.9
244,328 + +0.5
244,328 + -2.4
244,328 + +0.8
244,328 + -0.8
244,329 - -0.7
244,329 - +0.0
244,329 - -0.6
244,329 - -1.6
244,329 - -1.1
244,329 - -1.3
244,329 - -0.3
244,329 - +0.6
244,329 - +0.5
244,329 - -1.1
244,329 - -0.1
244,329 - -1.7
244,329 - +0.0
244,329 - -0.1
244,329 - -0.2
244,329 - +1.3
244,329 - -0.3
244,672 + MPMX19_05539 0.14 -2.1
244,672 + MPMX19_05539 0.14 -1.0
244,672 + MPMX19_05539 0.14 +0.4
244,672 + MPMX19_05539 0.14 +1.3
244,672 + MPMX19_05539 0.14 -0.4
244,673 - MPMX19_05539 0.14 +0.6
244,673 - MPMX19_05539 0.14 -0.2
244,673 - MPMX19_05539 0.14 +0.7
244,673 - MPMX19_05539 0.14 -0.6

Or see this region's nucleotide sequence