Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05458 and MPMX19_05459 are separated by 103 nucleotides MPMX19_05459 and MPMX19_05460 are separated by 275 nucleotides MPMX19_05460 and MPMX19_05461 are separated by 18 nucleotides
MPMX19_05458: MPMX19_05458 - hypothetical protein, at 145,358 to 146,107
_05458
MPMX19_05459: MPMX19_05459 - hypothetical protein, at 146,211 to 146,486
_05459
MPMX19_05460: MPMX19_05460 - hypothetical protein, at 146,762 to 149,620
_05460
MPMX19_05461: MPMX19_05461 - hypothetical protein, at 149,639 to 151,183
_05461
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 145.854 kb on - strand, within MPMX19_05458 at 145.854 kb on - strand, within MPMX19_05458 at 145.870 kb on + strand, within MPMX19_05458 at 145.870 kb on + strand, within MPMX19_05458 at 145.872 kb on + strand, within MPMX19_05458 at 145.872 kb on + strand, within MPMX19_05458 at 145.873 kb on - strand, within MPMX19_05458 at 145.873 kb on - strand, within MPMX19_05458 at 146.000 kb on + strand, within MPMX19_05458 at 146.000 kb on + strand, within MPMX19_05458 at 146.001 kb on - strand, within MPMX19_05458 at 146.001 kb on - strand, within MPMX19_05458 at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.145 kb on - strand at 146.313 kb on - strand, within MPMX19_05459 at 146.313 kb on - strand, within MPMX19_05459 at 146.368 kb on + strand, within MPMX19_05459 at 146.369 kb on - strand, within MPMX19_05459 at 146.444 kb on + strand, within MPMX19_05459 at 146.445 kb on - strand, within MPMX19_05459 at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.886 kb on - strand at 146.886 kb on - strand at 146.886 kb on - strand at 146.886 kb on - strand at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.910 kb on - strand, within MPMX19_05460 at 148.020 kb on + strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.083 kb on + strand, within MPMX19_05460 at 148.083 kb on + strand, within MPMX19_05460 at 148.084 kb on - strand, within MPMX19_05460 at 148.084 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.676 kb on - strand, within MPMX19_05460 at 148.676 kb on - strand, within MPMX19_05460 at 148.761 kb on + strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.841 kb on - strand, within MPMX19_05460 at 148.881 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.069 kb on - strand, within MPMX19_05460 at 149.205 kb on + strand, within MPMX19_05460 at 149.205 kb on + strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.568 kb on + strand at 149.756 kb on - strand at 149.802 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.017 kb on - strand, within MPMX19_05461 at 150.017 kb on - strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.580 kb on - strand, within MPMX19_05461 at 150.580 kb on - strand, within MPMX19_05461
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 145,854 - MPMX19_05458 0.66 +0.6 145,854 - MPMX19_05458 0.66 -1.3 145,870 + MPMX19_05458 0.68 +0.9 145,870 + MPMX19_05458 0.68 -1.6 145,872 + MPMX19_05458 0.69 +0.4 145,872 + MPMX19_05458 0.69 -1.9 145,873 - MPMX19_05458 0.69 +0.7 145,873 - MPMX19_05458 0.69 -1.0 146,000 + MPMX19_05458 0.86 -1.9 146,000 + MPMX19_05458 0.86 -0.7 146,001 - MPMX19_05458 0.86 +0.0 146,001 - MPMX19_05458 0.86 +2.0 146,048 + -0.3 146,048 + -0.8 146,048 + +0.4 146,048 + +0.3 146,048 + +0.3 146,048 + +2.4 146,048 + -2.1 146,048 + -0.8 146,048 + +0.1 146,048 + +0.4 146,048 + +2.0 146,048 + -0.9 146,049 - +0.6 146,049 - -1.1 146,049 - -2.2 146,049 - -0.9 146,049 - -1.1 146,049 - +0.5 146,049 - -1.8 146,049 - -0.3 146,049 - +0.7 146,049 - -0.0 146,145 - -1.3 146,313 - MPMX19_05459 0.37 +3.3 146,313 - MPMX19_05459 0.37 +0.4 146,368 + MPMX19_05459 0.57 +0.0 146,369 - MPMX19_05459 0.57 +0.4 146,444 + MPMX19_05459 0.84 +0.0 146,445 - MPMX19_05459 0.85 -2.4 146,564 + +0.8 146,564 + +0.4 146,564 + -0.1 146,564 + +0.7 146,564 + -1.0 146,564 + -1.9 146,564 + -0.7 146,565 - -1.3 146,565 - +0.4 146,565 - +1.2 146,565 - -1.4 146,565 - +0.8 146,566 + +1.0 146,566 + +1.8 146,566 + +0.3 146,566 + +0.4 146,566 + -0.8 146,566 + +0.0 146,566 + +0.4 146,566 + +0.8 146,567 - -0.7 146,567 - +0.2 146,567 - +0.8 146,567 - +1.3 146,567 - +0.7 146,567 - +0.9 146,567 - -1.1 146,567 - +0.4 146,567 - +1.8 146,567 - +1.3 146,665 + -0.7 146,665 + -2.3 146,665 + -1.4 146,665 + -1.6 146,665 + +0.4 146,665 + -0.2 146,665 + -0.6 146,665 + -0.9 146,665 + -1.7 146,665 + -2.1 146,665 + -0.2 146,665 + +0.7 146,665 + +1.6 146,665 + +1.4 146,665 + +0.4 146,665 + +1.4 146,665 + -1.4 146,665 + -1.8 146,666 - -0.3 146,666 - +0.1 146,666 - +1.2 146,666 - +1.4 146,666 - -1.6 146,666 - -1.3 146,666 - -0.3 146,666 - -1.6 146,666 - -0.2 146,666 - +1.3 146,666 - -0.6 146,666 - -0.6 146,666 - -1.5 146,666 - +0.8 146,670 + -0.1 146,670 + +0.0 146,670 + -1.6 146,670 + +1.0 146,670 + -0.6 146,670 + +0.4 146,670 + -1.6 146,670 + -0.9 146,670 + -0.2 146,671 - -0.8 146,671 - +0.3 146,671 - -0.3 146,671 - -1.3 146,671 - +0.1 146,671 - -0.1 146,671 - -0.8 146,671 - -2.5 146,671 - -1.7 146,671 - -0.4 146,671 - -0.9 146,671 - -0.5 146,671 - -1.4 146,671 - +1.8 146,671 - -1.6 146,671 - +1.6 146,671 - +1.0 146,671 - -0.3 146,696 + +1.5 146,696 + -1.6 146,696 + -0.3 146,696 + +0.7 146,696 + -0.8 146,696 + +0.1 146,696 + -0.8 146,696 + +0.3 146,696 + -1.0 146,696 + -0.3 146,696 + +2.2 146,696 + -0.8 146,696 + -0.3 146,696 + -0.3 146,696 + -1.4 146,696 + +0.4 146,697 - -0.8 146,697 - +0.4 146,697 - -0.6 146,697 - -1.2 146,697 - -0.3 146,697 - +0.9 146,697 - +0.1 146,697 - -0.4 146,885 + +0.6 146,885 + -0.4 146,885 + -1.2 146,885 + -2.4 146,885 + -0.4 146,885 + +0.7 146,885 + -0.3 146,886 - -1.0 146,886 - -1.9 146,886 - +0.2 146,886 - +0.0 147,327 + MPMX19_05460 0.20 -1.2 147,327 + MPMX19_05460 0.20 -0.6 147,327 + MPMX19_05460 0.20 +0.6 147,327 + MPMX19_05460 0.20 +0.4 147,327 + MPMX19_05460 0.20 -0.3 147,327 + MPMX19_05460 0.20 +0.2 147,327 + MPMX19_05460 0.20 +0.6 147,327 + MPMX19_05460 0.20 +0.1 147,328 - MPMX19_05460 0.20 +0.2 147,328 - MPMX19_05460 0.20 -1.0 147,328 - MPMX19_05460 0.20 +0.0 147,328 - MPMX19_05460 0.20 -0.8 147,328 - MPMX19_05460 0.20 +0.2 147,328 - MPMX19_05460 0.20 -1.2 147,328 - MPMX19_05460 0.20 -1.0 147,328 - MPMX19_05460 0.20 -0.8 147,328 - MPMX19_05460 0.20 -0.7 147,328 - MPMX19_05460 0.20 +0.6 147,910 - MPMX19_05460 0.40 +1.2 148,020 + MPMX19_05460 0.44 +0.1 148,021 - MPMX19_05460 0.44 -1.1 148,021 - MPMX19_05460 0.44 +0.0 148,021 - MPMX19_05460 0.44 +0.1 148,021 - MPMX19_05460 0.44 -0.4 148,083 + MPMX19_05460 0.46 +1.0 148,083 + MPMX19_05460 0.46 +0.2 148,084 - MPMX19_05460 0.46 -0.7 148,084 - MPMX19_05460 0.46 +0.1 148,355 - MPMX19_05460 0.56 -0.6 148,355 - MPMX19_05460 0.56 -2.2 148,355 - MPMX19_05460 0.56 -0.2 148,473 + MPMX19_05460 0.60 +0.4 148,473 + MPMX19_05460 0.60 +0.0 148,473 + MPMX19_05460 0.60 -0.1 148,473 + MPMX19_05460 0.60 -0.3 148,473 + MPMX19_05460 0.60 -0.1 148,473 + MPMX19_05460 0.60 +0.0 148,473 + MPMX19_05460 0.60 -1.3 148,473 + MPMX19_05460 0.60 -0.2 148,473 + MPMX19_05460 0.60 +0.6 148,473 + MPMX19_05460 0.60 -2.0 148,474 - MPMX19_05460 0.60 +0.4 148,474 - MPMX19_05460 0.60 +0.8 148,474 - MPMX19_05460 0.60 +0.0 148,474 - MPMX19_05460 0.60 +0.0 148,474 - MPMX19_05460 0.60 +1.6 148,474 - MPMX19_05460 0.60 +0.6 148,474 - MPMX19_05460 0.60 +0.6 148,474 - MPMX19_05460 0.60 +0.4 148,474 - MPMX19_05460 0.60 -0.5 148,474 - MPMX19_05460 0.60 +1.6 148,474 - MPMX19_05460 0.60 +0.4 148,474 - MPMX19_05460 0.60 -0.4 148,474 - MPMX19_05460 0.60 -0.2 148,474 - MPMX19_05460 0.60 -0.9 148,675 + MPMX19_05460 0.67 +0.0 148,675 + MPMX19_05460 0.67 -0.1 148,675 + MPMX19_05460 0.67 -1.7 148,676 - MPMX19_05460 0.67 +0.7 148,676 - MPMX19_05460 0.67 +1.0 148,761 + MPMX19_05460 0.70 +0.0 148,762 - MPMX19_05460 0.70 -1.0 148,762 - MPMX19_05460 0.70 +0.3 148,762 - MPMX19_05460 0.70 -0.2 148,762 - MPMX19_05460 0.70 -0.2 148,762 - MPMX19_05460 0.70 -0.8 148,840 + MPMX19_05460 0.73 -0.3 148,840 + MPMX19_05460 0.73 -0.4 148,840 + MPMX19_05460 0.73 -0.6 148,840 + MPMX19_05460 0.73 -1.4 148,840 + MPMX19_05460 0.73 -0.4 148,841 - MPMX19_05460 0.73 -1.7 148,881 + MPMX19_05460 0.74 +0.4 149,068 + MPMX19_05460 0.81 -0.9 149,068 + MPMX19_05460 0.81 -0.3 149,068 + MPMX19_05460 0.81 -0.5 149,069 - MPMX19_05460 0.81 -1.3 149,205 + MPMX19_05460 0.85 +1.0 149,205 + MPMX19_05460 0.85 +0.6 149,206 - MPMX19_05460 0.85 +0.0 149,206 - MPMX19_05460 0.85 -0.4 149,206 - MPMX19_05460 0.85 -0.9 149,568 + +1.3 149,756 - +0.1 149,802 + MPMX19_05461 0.11 -1.3 150,016 + MPMX19_05461 0.24 +0.4 150,016 + MPMX19_05461 0.24 +1.0 150,016 + MPMX19_05461 0.24 -0.4 150,017 - MPMX19_05461 0.24 -0.4 150,017 - MPMX19_05461 0.24 -1.4 150,076 + MPMX19_05461 0.28 -0.4 150,076 + MPMX19_05461 0.28 -0.1 150,076 + MPMX19_05461 0.28 +0.2 150,076 + MPMX19_05461 0.28 -1.3 150,077 - MPMX19_05461 0.28 +0.0 150,077 - MPMX19_05461 0.28 -1.3 150,077 - MPMX19_05461 0.28 -1.3 150,077 - MPMX19_05461 0.28 -0.8 150,579 + MPMX19_05461 0.61 -0.6 150,579 + MPMX19_05461 0.61 -1.3 150,579 + MPMX19_05461 0.61 +0.3 150,579 + MPMX19_05461 0.61 +0.8 150,579 + MPMX19_05461 0.61 -1.6 150,579 + MPMX19_05461 0.61 +1.4 150,579 + MPMX19_05461 0.61 -0.9 150,579 + MPMX19_05461 0.61 -1.2 150,580 - MPMX19_05461 0.61 -2.2 150,580 - MPMX19_05461 0.61 -1.7
Or see this region's nucleotide sequence