Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05433

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05432 and MPMX19_05433 are separated by 345 nucleotidesMPMX19_05433 and MPMX19_05434 are separated by 4 nucleotidesMPMX19_05434 and MPMX19_05435 are separated by 44 nucleotides MPMX19_05432: MPMX19_05432 - hypothetical protein, at 124,296 to 124,961 _05432 MPMX19_05433: MPMX19_05433 - hypothetical protein, at 125,307 to 125,558 _05433 MPMX19_05434: MPMX19_05434 - hypothetical protein, at 125,563 to 125,997 _05434 MPMX19_05435: MPMX19_05435 - L-threo-3-hydroxyaspartate ammonia-lyase, at 126,042 to 127,058 _05435 Position (kb) 125 126Strain fitness (log2 ratio) -2 -1 0 1 2 3at 124.342 kb on - strandat 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.564 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.837 kb on - strand, within MPMX19_05432at 124.959 kb on + strandat 124.959 kb on + strandat 124.959 kb on + strandat 124.960 kb on - strandat 125.018 kb on + strandat 125.189 kb on - strandat 125.252 kb on + strandat 125.253 kb on - strandat 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.605 kb on + strandat 125.605 kb on + strandat 125.605 kb on + strandat 125.606 kb on - strandat 125.794 kb on + strand, within MPMX19_05434at 125.794 kb on + strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.996 kb on - strandat 125.996 kb on - strandat 125.996 kb on - strandat 126.078 kb on - strandat 126.099 kb on + strandat 126.099 kb on + strandat 126.099 kb on + strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.309 kb on + strand, within MPMX19_05435at 126.310 kb on - strand, within MPMX19_05435at 126.310 kb on - strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.457 kb on - strand, within MPMX19_05435

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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124,342 - -1.6
124,518 + MPMX19_05432 0.33 -1.1
124,518 + MPMX19_05432 0.33 +1.0
124,518 + MPMX19_05432 0.33 -1.0
124,519 - MPMX19_05432 0.33 -0.4
124,519 - MPMX19_05432 0.33 -0.4
124,519 - MPMX19_05432 0.33 +1.1
124,563 + MPMX19_05432 0.40 -0.4
124,563 + MPMX19_05432 0.40 +0.2
124,563 + MPMX19_05432 0.40 -0.3
124,563 + MPMX19_05432 0.40 -2.6
124,563 + MPMX19_05432 0.40 -0.2
124,563 + MPMX19_05432 0.40 +0.9
124,564 - MPMX19_05432 0.40 -0.3
124,582 - MPMX19_05432 0.43 +0.0
124,582 - MPMX19_05432 0.43 -0.6
124,837 - MPMX19_05432 0.81 -0.0
124,959 + +0.8
124,959 + -1.1
124,959 + -1.5
124,960 - -0.1
125,018 + -0.1
125,189 - +0.3
125,252 + -2.2
125,253 - +0.4
125,343 + MPMX19_05433 0.14 +0.2
125,343 + MPMX19_05433 0.14 -0.3
125,343 + MPMX19_05433 0.14 -0.2
125,343 + MPMX19_05433 0.14 -0.2
125,343 + MPMX19_05433 0.14 -1.3
125,343 + MPMX19_05433 0.14 -0.3
125,343 + MPMX19_05433 0.14 -0.4
125,343 + MPMX19_05433 0.14 -1.3
125,344 - MPMX19_05433 0.15 -1.2
125,344 - MPMX19_05433 0.15 -1.7
125,344 - MPMX19_05433 0.15 +0.4
125,344 - MPMX19_05433 0.15 -2.0
125,484 + MPMX19_05433 0.70 -1.0
125,484 + MPMX19_05433 0.70 +0.6
125,484 + MPMX19_05433 0.70 -1.3
125,485 - MPMX19_05433 0.71 -2.4
125,485 - MPMX19_05433 0.71 -1.6
125,485 - MPMX19_05433 0.71 +0.4
125,605 + -1.0
125,605 + -0.7
125,605 + -0.7
125,606 - -2.0
125,794 + MPMX19_05434 0.53 -0.8
125,794 + MPMX19_05434 0.53 -0.5
125,795 - MPMX19_05434 0.53 +0.6
125,795 - MPMX19_05434 0.53 -0.2
125,795 - MPMX19_05434 0.53 +0.2
125,803 + MPMX19_05434 0.55 +0.4
125,803 + MPMX19_05434 0.55 -0.4
125,803 + MPMX19_05434 0.55 -2.1
125,803 + MPMX19_05434 0.55 +0.1
125,803 + MPMX19_05434 0.55 +0.8
125,803 + MPMX19_05434 0.55 -0.5
125,803 + MPMX19_05434 0.55 -0.7
125,803 + MPMX19_05434 0.55 -0.2
125,803 + MPMX19_05434 0.55 +0.4
125,803 + MPMX19_05434 0.55 -1.3
125,804 - MPMX19_05434 0.55 +0.1
125,804 - MPMX19_05434 0.55 +1.0
125,804 - MPMX19_05434 0.55 -0.9
125,804 - MPMX19_05434 0.55 +0.8
125,804 - MPMX19_05434 0.55 -1.3
125,804 - MPMX19_05434 0.55 -0.3
125,804 - MPMX19_05434 0.55 -0.3
125,804 - MPMX19_05434 0.55 +0.9
125,804 - MPMX19_05434 0.55 -0.2
125,804 - MPMX19_05434 0.55 -1.3
125,804 - MPMX19_05434 0.55 -0.2
125,938 + MPMX19_05434 0.86 -0.2
125,938 + MPMX19_05434 0.86 -1.2
125,938 + MPMX19_05434 0.86 -2.0
125,938 + MPMX19_05434 0.86 -1.3
125,938 + MPMX19_05434 0.86 -0.6
125,938 + MPMX19_05434 0.86 -0.2
125,938 + MPMX19_05434 0.86 -1.0
125,938 + MPMX19_05434 0.86 +0.0
125,938 + MPMX19_05434 0.86 -0.6
125,938 + MPMX19_05434 0.86 -0.2
125,939 - MPMX19_05434 0.86 +0.2
125,939 - MPMX19_05434 0.86 +0.8
125,939 - MPMX19_05434 0.86 -0.8
125,995 + -0.6
125,995 + +0.6
125,995 + +0.4
125,995 + -0.1
125,995 + -0.5
125,995 + -1.2
125,996 - -0.7
125,996 - -0.2
125,996 - -1.1
126,078 - -0.5
126,099 + -0.8
126,099 + -0.5
126,099 + +0.0
126,100 - -0.6
126,100 - -1.2
126,100 - -0.6
126,100 - -0.8
126,100 - +0.2
126,255 + MPMX19_05435 0.21 -1.3
126,255 + MPMX19_05435 0.21 +1.2
126,255 + MPMX19_05435 0.21 -0.9
126,255 + MPMX19_05435 0.21 -1.2
126,255 + MPMX19_05435 0.21 -0.1
126,255 + MPMX19_05435 0.21 +2.8
126,255 + MPMX19_05435 0.21 -0.6
126,255 + MPMX19_05435 0.21 -0.4
126,256 - MPMX19_05435 0.21 +1.0
126,256 - MPMX19_05435 0.21 -0.4
126,256 - MPMX19_05435 0.21 +0.8
126,256 - MPMX19_05435 0.21 +0.1
126,256 - MPMX19_05435 0.21 -0.2
126,309 + MPMX19_05435 0.26 -1.1
126,310 - MPMX19_05435 0.26 +1.2
126,310 - MPMX19_05435 0.26 -0.3
126,447 + MPMX19_05435 0.40 +0.3
126,447 + MPMX19_05435 0.40 -1.6
126,447 + MPMX19_05435 0.40 -0.8
126,447 + MPMX19_05435 0.40 +0.4
126,447 + MPMX19_05435 0.40 -0.6
126,448 - MPMX19_05435 0.40 -1.9
126,448 - MPMX19_05435 0.40 -1.3
126,448 - MPMX19_05435 0.40 -1.0
126,448 - MPMX19_05435 0.40 +0.3
126,448 - MPMX19_05435 0.40 +0.3
126,448 - MPMX19_05435 0.40 -1.3
126,448 - MPMX19_05435 0.40 -1.4
126,456 + MPMX19_05435 0.41 +0.6
126,456 + MPMX19_05435 0.41 +0.3
126,456 + MPMX19_05435 0.41 -0.3
126,457 - MPMX19_05435 0.41 -0.2

Or see this region's nucleotide sequence