Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05424

Experiment: NF

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	NF
				remove
113,425	-	MPMX19_05423	0.52	-1.4
113,447	+	MPMX19_05423	0.53	+0.3
113,447	+	MPMX19_05423	0.53	+0.2
113,447	+	MPMX19_05423	0.53	-0.7
113,447	+	MPMX19_05423	0.53	-0.3
113,447	+	MPMX19_05423	0.53	+1.4
113,447	+	MPMX19_05423	0.53	-1.2
113,447	+	MPMX19_05423	0.53	-1.9
113,447	+	MPMX19_05423	0.53	+1.0
113,447	+	MPMX19_05423	0.53	-0.6
113,448	-	MPMX19_05423	0.53	-0.4
113,448	-	MPMX19_05423	0.53	+0.4
113,448	-	MPMX19_05423	0.53	-1.0
113,448	-	MPMX19_05423	0.53	+0.0
113,448	-	MPMX19_05423	0.53	-0.6
113,448	-	MPMX19_05423	0.53	-0.2
113,448	-	MPMX19_05423	0.53	-0.5
113,448	-	MPMX19_05423	0.53	-1.4
113,448	-	MPMX19_05423	0.53	-0.8
113,453	+	MPMX19_05423	0.53	+1.0
113,453	+	MPMX19_05423	0.53	+0.4
113,453	+	MPMX19_05423	0.53	-0.4
113,453	+	MPMX19_05423	0.53	+0.1
113,453	+	MPMX19_05423	0.53	+0.7
113,453	+	MPMX19_05423	0.53	+0.0
113,453	+	MPMX19_05423	0.53	-0.8
113,453	+	MPMX19_05423	0.53	+0.4
113,453	+	MPMX19_05423	0.53	+1.4
113,453	+	MPMX19_05423	0.53	+0.8
113,453	+	MPMX19_05423	0.53	-0.3
113,453	+	MPMX19_05423	0.53	+1.0
113,453	+	MPMX19_05423	0.53	-0.2
113,453	+	MPMX19_05423	0.53	-0.7
113,453	+	MPMX19_05423	0.53	+0.3
113,454	-	MPMX19_05423	0.54	-0.4
113,454	-	MPMX19_05423	0.54	+0.9
113,454	-	MPMX19_05423	0.54	-1.7
113,454	-	MPMX19_05423	0.54	-0.7
113,454	-	MPMX19_05423	0.54	-1.3
113,454	-	MPMX19_05423	0.54	+0.2
113,454	-	MPMX19_05423	0.54	-0.2
113,454	-	MPMX19_05423	0.54	-0.4
113,747	+	MPMX19_05423	0.73	-1.2
113,747	+	MPMX19_05423	0.73	-0.5
113,747	+	MPMX19_05423	0.73	-0.6
113,747	+	MPMX19_05423	0.73	+0.5
113,747	+	MPMX19_05423	0.73	-0.2
113,747	+	MPMX19_05423	0.73	+0.2
113,747	+	MPMX19_05423	0.73	-1.8
113,747	+	MPMX19_05423	0.73	-0.2
113,747	+	MPMX19_05423	0.73	+1.0
113,747	+	MPMX19_05423	0.73	+0.4
113,747	+	MPMX19_05423	0.73	-0.2
113,747	+	MPMX19_05423	0.73	-1.0
113,748	-	MPMX19_05423	0.73	-1.1
113,748	-	MPMX19_05423	0.73	-0.9
113,748	-	MPMX19_05423	0.73	-0.2
113,748	-	MPMX19_05423	0.73	-1.3
113,748	-	MPMX19_05423	0.73	-0.8
113,748	-	MPMX19_05423	0.73	-1.5
113,748	-	MPMX19_05423	0.73	+0.0
113,748	-	MPMX19_05423	0.73	-1.1
113,748	-	MPMX19_05423	0.73	-0.4
113,748	-	MPMX19_05423	0.73	-0.7
113,748	-	MPMX19_05423	0.73	-1.2
113,748	-	MPMX19_05423	0.73	-2.0
113,748	-	MPMX19_05423	0.73	+0.8
113,748	-	MPMX19_05423	0.73	-2.3
113,748	-	MPMX19_05423	0.73	-0.2
113,748	-	MPMX19_05423	0.73	-0.9
113,748	-	MPMX19_05423	0.73	+0.2
113,748	-	MPMX19_05423	0.73	-2.8
113,748	-	MPMX19_05423	0.73	-0.5
113,909	+	MPMX19_05423	0.84	-0.9
113,909	+	MPMX19_05423	0.84	+0.3
114,077	+			+0.8
114,077	+			-0.4
114,077	+			-0.2
114,077	+			-1.0
114,077	+			+0.7
114,077	+			+0.6
114,077	+			+0.3
114,077	+			-0.3
114,078	-			-0.8
114,078	-			-2.0
114,078	-			-0.2
114,078	-			-0.8
114,078	-			-0.8
114,153	+			+0.5
114,153	+			+0.1
114,153	+			-1.2
114,302	+			+2.0
114,302	+			-0.7
114,302	+			+1.4
114,302	+			-0.3
114,302	+			+0.4
114,303	-			+0.5
114,303	-			-0.8
114,303	-			+0.4
114,303	-			-0.3
114,303	-			-0.2
114,303	-			+0.6
114,304	+			-1.2
114,304	+			-0.6
114,304	+			-1.9
114,304	+			+0.0
114,304	+			+0.9
114,304	+			-0.3
114,304	+			-1.9
114,304	+			+1.4
114,304	+			-1.0
114,304	+			-0.6
114,304	+			-1.3
114,304	+			+1.0
114,304	+			-0.9
114,304	+			+0.1
114,304	+			-0.2
114,304	+			+0.2
114,304	+			-0.4
114,304	+			+1.0
114,304	+			-1.9
114,305	-			+0.3
114,305	-			+0.3
114,305	-			+1.4
114,305	-			+0.2
114,305	-			-0.6
114,305	-			-0.7
114,305	-			-1.6
114,305	-			+0.1
114,305	-			+0.0
114,447	+			-2.6
114,447	+			-0.3
114,447	+			-1.0
114,448	-			-1.4
114,448	-			-0.3
114,448	-			-0.7
114,629	-	MPMX19_05424	0.22	-0.6
114,783	+	MPMX19_05424	0.37	+0.7
114,783	+	MPMX19_05424	0.37	-0.2
114,783	+	MPMX19_05424	0.37	-0.2
114,783	+	MPMX19_05424	0.37	-0.3
114,783	+	MPMX19_05424	0.37	+1.3
114,783	+	MPMX19_05424	0.37	-0.1
114,783	+	MPMX19_05424	0.37	+0.0
114,783	+	MPMX19_05424	0.37	-0.5
114,783	+	MPMX19_05424	0.37	-1.4
114,783	+	MPMX19_05424	0.37	+0.1
114,783	+	MPMX19_05424	0.37	-0.3
114,783	+	MPMX19_05424	0.37	-1.0
114,783	+	MPMX19_05424	0.37	-0.4
114,783	+	MPMX19_05424	0.37	-1.9
114,783	+	MPMX19_05424	0.37	-1.9
114,783	+	MPMX19_05424	0.37	-0.7
114,783	+	MPMX19_05424	0.37	-0.6
114,783	+	MPMX19_05424	0.37	+0.7
114,783	+	MPMX19_05424	0.37	-1.7
114,783	+	MPMX19_05424	0.37	+0.6
114,784	-	MPMX19_05424	0.37	-0.8
114,784	-	MPMX19_05424	0.37	+0.2
114,784	-	MPMX19_05424	0.37	-0.8
114,784	-	MPMX19_05424	0.37	-0.5
114,784	-	MPMX19_05424	0.37	-0.8
114,784	-	MPMX19_05424	0.37	-0.7
114,784	-	MPMX19_05424	0.37	-0.4
114,784	-	MPMX19_05424	0.37	-0.6
114,784	-	MPMX19_05424	0.37	+0.2
114,784	-	MPMX19_05424	0.37	-0.9
114,784	-	MPMX19_05424	0.37	+0.1
114,784	-	MPMX19_05424	0.37	-0.6
114,784	-	MPMX19_05424	0.37	+1.3
114,784	-	MPMX19_05424	0.37	-0.9
114,784	-	MPMX19_05424	0.37	+0.2
114,784	-	MPMX19_05424	0.37	+0.2
114,784	-	MPMX19_05424	0.37	-1.2
114,784	-	MPMX19_05424	0.37	+0.0
114,923	+	MPMX19_05424	0.49	+0.2
114,923	+	MPMX19_05424	0.49	-0.3
114,924	-	MPMX19_05424	0.50	+0.0
115,062	+	MPMX19_05424	0.62	+0.0
115,062	+	MPMX19_05424	0.62	+0.0
115,062	+	MPMX19_05424	0.62	+0.0
115,062	+	MPMX19_05424	0.62	-1.4
115,063	-	MPMX19_05424	0.62	-1.4
115,063	-	MPMX19_05424	0.62	-0.6
115,063	-	MPMX19_05424	0.62	+0.0
115,063	-	MPMX19_05424	0.62	-1.1
115,089	+	MPMX19_05424	0.65	+0.7
115,089	+	MPMX19_05424	0.65	-1.2
115,089	+	MPMX19_05424	0.65	-1.4
115,090	-	MPMX19_05424	0.65	+0.0
115,090	-	MPMX19_05424	0.65	+0.4
115,090	-	MPMX19_05424	0.65	-1.7
115,090	-	MPMX19_05424	0.65	+0.0
115,090	-	MPMX19_05424	0.65	-1.8
115,090	-	MPMX19_05424	0.65	-0.2
115,097	+	MPMX19_05424	0.65	-0.4
115,257	+	MPMX19_05424	0.80	-0.4
115,257	+	MPMX19_05424	0.80	-1.0
115,257	+	MPMX19_05424	0.80	-0.7
115,257	+	MPMX19_05424	0.80	+0.4
115,257	+	MPMX19_05424	0.80	+0.6
115,257	+	MPMX19_05424	0.80	-1.3
115,257	+	MPMX19_05424	0.80	-1.9
115,258	-	MPMX19_05424	0.80	+0.4
115,258	-	MPMX19_05424	0.80	+1.0
115,258	-	MPMX19_05424	0.80	+0.0
115,258	-	MPMX19_05424	0.80	-0.1
115,258	-	MPMX19_05424	0.80	+0.8
115,258	-	MPMX19_05424	0.80	+0.4
115,474	-			-0.2
115,505	+			-0.8
115,505	+			+0.6
115,565	+			+0.2
115,565	+			+1.3
115,565	+			-0.4
115,565	+			-0.6
115,565	+			-0.0
115,565	+			-1.6
115,565	+			+1.1
115,565	+			-0.1
115,565	+			+2.8
115,565	+			+0.4
115,565	+			-0.7
115,565	+			+0.4
115,565	+			+0.0
115,565	+			+1.4
115,565	+			-0.4
115,565	+			-0.2
115,565	+			-2.6
115,566	-			+0.0
115,566	-			+0.6
115,566	-			-0.5
115,566	-			-0.2
115,566	-			+0.3
115,566	-			-0.2
115,566	-			+0.7
115,566	-			-1.0
115,566	-			-0.6
115,566	-			+0.0
115,566	-			+0.1
115,566	-			-0.2
115,566	-			-0.4
115,566	-			+0.0
115,566	-			+0.2
115,566	-			-1.3
115,566	-			-1.1
115,640	+			+0.6
115,640	+			+0.4
115,640	+			-0.2
115,640	+			+0.1
115,640	+			-1.0
115,640	+			+0.6
115,640	+			-0.3
115,640	+			-1.2
115,640	+			+0.1
115,640	+			-0.6
115,640	+			+0.4
115,640	+			-1.0
115,640	+			+0.3
115,640	+			+0.8
115,640	+			+0.8
115,640	+			+0.0
115,640	+			-0.2
115,641	-			+0.5
115,641	-			-0.0
115,641	-			-0.8
115,641	-			-0.9
115,641	-			-1.0
115,641	-			+0.5
115,641	-			+0.4
115,641	-			-1.0
115,641	-			+0.6
115,641	-			-1.2
115,641	-			+0.4
115,641	-			-0.7
115,641	-			-0.1
115,763	+			-0.3
115,763	+			+0.0
115,763	+			-2.1
115,763	+			-0.3
115,894	-	MPMX19_05425	0.17	-0.3
115,913	+	MPMX19_05425	0.18	+0.3
115,913	+	MPMX19_05425	0.18	-0.2
115,913	+	MPMX19_05425	0.18	+0.0
115,913	+	MPMX19_05425	0.18	-0.3
115,913	+	MPMX19_05425	0.18	-1.0
115,913	+	MPMX19_05425	0.18	-1.0
115,913	+	MPMX19_05425	0.18	+2.0
115,913	+	MPMX19_05425	0.18	-1.1
115,914	-	MPMX19_05425	0.18	-0.6
115,914	-	MPMX19_05425	0.18	+0.4
115,914	-	MPMX19_05425	0.18	-2.2
115,914	-	MPMX19_05425	0.18	-0.6
115,914	-	MPMX19_05425	0.18	+0.4
115,914	-	MPMX19_05425	0.18	-0.8
115,914	-	MPMX19_05425	0.18	-0.7
115,914	-	MPMX19_05425	0.18	+0.8
115,914	-	MPMX19_05425	0.18	-0.2
115,916	+	MPMX19_05425	0.19	+0.8
115,916	+	MPMX19_05425	0.19	-0.3
115,916	+	MPMX19_05425	0.19	-1.3
115,916	+	MPMX19_05425	0.19	+0.3
115,917	-	MPMX19_05425	0.19	-0.8
115,917	-	MPMX19_05425	0.19	-0.4
115,925	+	MPMX19_05425	0.19	+0.2
115,925	+	MPMX19_05425	0.19	-0.7
115,925	+	MPMX19_05425	0.19	+0.0
115,925	+	MPMX19_05425	0.19	-1.6
115,925	+	MPMX19_05425	0.19	-0.3
115,925	+	MPMX19_05425	0.19	-0.3
115,925	+	MPMX19_05425	0.19	-1.4
115,926	-	MPMX19_05425	0.19	+0.1
115,926	-	MPMX19_05425	0.19	+0.4
115,926	-	MPMX19_05425	0.19	+0.5
115,926	-	MPMX19_05425	0.19	-1.2
115,926	-	MPMX19_05425	0.19	-0.4
115,926	-	MPMX19_05425	0.19	+0.4
115,926	-	MPMX19_05425	0.19	+0.1
116,276	+	MPMX19_05425	0.44	-0.7
116,276	+	MPMX19_05425	0.44	+0.9
116,277	-	MPMX19_05425	0.44	+1.0
116,277	-	MPMX19_05425	0.44	-1.6
116,277	-	MPMX19_05425	0.44	-0.4
116,277	-	MPMX19_05425	0.44	-0.5
116,277	-	MPMX19_05425	0.44	+1.0
116,420	+	MPMX19_05425	0.55	-1.0
116,420	+	MPMX19_05425	0.55	-0.6
116,420	+	MPMX19_05425	0.55	-0.3
116,420	+	MPMX19_05425	0.55	+1.3
116,420	+	MPMX19_05425	0.55	-0.9
116,420	+	MPMX19_05425	0.55	+0.5
116,420	+	MPMX19_05425	0.55	-1.7
116,420	+	MPMX19_05425	0.55	+1.6
116,420	+	MPMX19_05425	0.55	+0.5
116,420	+	MPMX19_05425	0.55	-0.3
116,420	+	MPMX19_05425	0.55	-1.0
116,420	+	MPMX19_05425	0.55	-1.4
116,421	-	MPMX19_05425	0.55	+0.2
116,421	-	MPMX19_05425	0.55	-0.3
116,421	-	MPMX19_05425	0.55	-0.6
116,421	-	MPMX19_05425	0.55	+0.4
116,421	-	MPMX19_05425	0.55	+0.7
116,421	-	MPMX19_05425	0.55	-0.3
116,421	-	MPMX19_05425	0.55	-0.1
116,421	-	MPMX19_05425	0.55	-0.7
116,421	-	MPMX19_05425	0.55	-1.2
116,421	-	MPMX19_05425	0.55	+1.3
116,421	-	MPMX19_05425	0.55	-0.5
116,421	-	MPMX19_05425	0.55	-0.4
116,421	-	MPMX19_05425	0.55	-1.2
116,421	-	MPMX19_05425	0.55	-1.2

Or see this region's nucleotide sequence