Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05345 and MPMX19_05346 are separated by 98 nucleotides MPMX19_05346 and MPMX19_05347 are separated by 68 nucleotides MPMX19_05347 and MPMX19_05348 are separated by 344 nucleotides
MPMX19_05345: MPMX19_05345 - hypothetical protein, at 17,210 to 17,923
_05345
MPMX19_05346: MPMX19_05346 - hypothetical protein, at 18,022 to 18,654
_05346
MPMX19_05347: MPMX19_05347 - hypothetical protein, at 18,723 to 19,607
_05347
MPMX19_05348: MPMX19_05348 - hypothetical protein, at 19,952 to 21,628
_05348
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.871 kb on + strand at 17.871 kb on + strand at 17.871 kb on + strand at 17.871 kb on + strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.913 kb on + strand at 17.986 kb on - strand at 18.196 kb on + strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.646 kb on + strand at 19.647 kb on - strand at 19.700 kb on + strand at 19.789 kb on - strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.913 kb on + strand at 19.913 kb on + strand at 19.919 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.017 kb on - strand at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 17,871 + -0.9 17,871 + +0.6 17,871 + -2.4 17,871 + -0.8 17,872 - -0.4 17,872 - -1.6 17,872 - +0.5 17,872 - -0.1 17,913 + -0.4 17,986 - +0.3 18,196 + MPMX19_05346 0.27 -3.2 18,197 - MPMX19_05346 0.28 -1.9 18,197 - MPMX19_05346 0.28 -0.4 18,197 - MPMX19_05346 0.28 -0.2 18,197 - MPMX19_05346 0.28 -0.6 18,352 - MPMX19_05346 0.52 +0.0 18,352 - MPMX19_05346 0.52 -0.6 18,352 - MPMX19_05346 0.52 +0.8 18,424 + MPMX19_05346 0.64 +1.0 18,424 + MPMX19_05346 0.64 +0.1 18,424 + MPMX19_05346 0.64 -0.4 18,424 + MPMX19_05346 0.64 +0.4 18,424 + MPMX19_05346 0.64 -0.2 18,424 + MPMX19_05346 0.64 -1.2 18,424 + MPMX19_05346 0.64 +1.3 18,425 - MPMX19_05346 0.64 -1.0 18,425 - MPMX19_05346 0.64 +0.9 18,425 - MPMX19_05346 0.64 +0.0 18,425 - MPMX19_05346 0.64 -1.0 18,650 + -0.2 18,650 + -1.8 18,650 + +0.0 18,650 + -1.1 18,650 + -2.3 18,650 + +0.0 18,650 + -1.0 18,650 + +2.0 18,650 + +0.5 18,650 + +0.3 18,650 + -1.2 18,650 + -0.7 18,651 - -0.7 18,651 - -0.8 18,651 - +0.8 18,651 - -0.2 18,651 - +1.5 18,651 - -1.0 18,651 - +0.4 18,651 - +0.8 18,651 - +1.8 18,651 - -1.1 18,651 - -0.2 18,651 - -0.4 18,652 + +0.4 18,652 + -1.4 18,652 + +0.6 18,652 + +0.5 18,652 + +0.0 18,652 + -2.0 18,652 + -0.7 18,652 + -0.3 18,653 - -0.6 18,653 - -0.2 18,653 - -1.1 18,653 - -0.6 18,653 - -0.6 18,669 + +0.5 18,669 + +0.5 18,669 + -0.3 18,669 + +1.8 18,669 + +0.0 18,669 + +1.0 18,670 - -0.6 18,670 - +0.6 18,670 - +0.9 18,670 - +0.1 18,670 - -0.9 18,670 - +1.2 18,670 - +0.6 18,670 - -0.2 18,670 - -0.8 18,670 - +0.4 18,670 - -0.2 18,670 - -0.8 18,670 - +0.8 18,790 + +0.2 18,790 + -0.6 18,790 + -0.8 18,790 + -2.0 18,790 + +0.0 18,790 + +2.4 18,790 + +0.1 18,790 + +0.7 18,790 + -1.0 18,790 + -0.3 18,790 + +0.2 18,790 + +0.8 18,790 + -0.8 18,790 + -0.8 18,790 + +1.2 18,790 + +1.1 18,790 + +0.6 18,791 - -1.0 18,791 - -1.7 18,791 - -0.8 18,791 - -0.9 18,791 - -0.6 18,791 - +0.8 18,791 - -0.4 18,791 - -0.3 18,791 - -1.6 18,791 - -2.9 18,791 - -2.2 18,791 - +0.8 18,791 - -1.1 18,791 - +1.4 18,791 - +1.1 18,791 - +0.9 18,791 - -1.6 18,791 - -1.2 18,791 - -0.6 18,791 - +0.1 18,791 - -1.4 18,791 - -1.0 18,791 - -0.2 18,791 - -0.2 18,791 - -0.2 18,791 - +0.7 18,791 - -0.4 18,967 + MPMX19_05347 0.28 -0.5 18,967 + MPMX19_05347 0.28 -0.1 18,967 + MPMX19_05347 0.28 +0.0 18,967 + MPMX19_05347 0.28 +1.6 18,967 + MPMX19_05347 0.28 -1.0 18,968 - MPMX19_05347 0.28 -1.4 18,968 - MPMX19_05347 0.28 -0.3 18,968 - MPMX19_05347 0.28 -0.3 18,968 - MPMX19_05347 0.28 -0.2 19,249 + MPMX19_05347 0.59 -1.5 19,249 + MPMX19_05347 0.59 +0.4 19,249 + MPMX19_05347 0.59 -1.1 19,249 + MPMX19_05347 0.59 -0.3 19,249 + MPMX19_05347 0.59 +0.0 19,337 - MPMX19_05347 0.69 -0.9 19,337 - MPMX19_05347 0.69 -0.6 19,369 + MPMX19_05347 0.73 -1.8 19,369 + MPMX19_05347 0.73 -0.7 19,369 + MPMX19_05347 0.73 -1.2 19,369 + MPMX19_05347 0.73 +0.2 19,369 + MPMX19_05347 0.73 +0.6 19,369 + MPMX19_05347 0.73 -0.8 19,369 + MPMX19_05347 0.73 -0.6 19,369 + MPMX19_05347 0.73 -0.4 19,369 + MPMX19_05347 0.73 +1.6 19,369 + MPMX19_05347 0.73 -0.5 19,369 + MPMX19_05347 0.73 -0.6 19,369 + MPMX19_05347 0.73 -1.0 19,369 + MPMX19_05347 0.73 -1.3 19,369 + MPMX19_05347 0.73 +0.8 19,370 - MPMX19_05347 0.73 -0.6 19,370 - MPMX19_05347 0.73 -0.4 19,370 - MPMX19_05347 0.73 +0.3 19,370 - MPMX19_05347 0.73 +0.2 19,370 - MPMX19_05347 0.73 -1.0 19,370 - MPMX19_05347 0.73 -0.9 19,370 - MPMX19_05347 0.73 -0.3 19,370 - MPMX19_05347 0.73 -0.3 19,370 - MPMX19_05347 0.73 -0.6 19,370 - MPMX19_05347 0.73 -1.7 19,370 - MPMX19_05347 0.73 -0.3 19,646 + -0.9 19,647 - +1.1 19,700 + +0.0 19,789 - -1.0 19,864 + -0.8 19,864 + +0.4 19,864 + +1.0 19,864 + -0.8 19,864 + -0.6 19,864 + -1.4 19,864 + -1.2 19,864 + -0.7 19,864 + -1.0 19,864 + +0.1 19,913 + +0.0 19,913 + +0.4 19,919 + -0.8 20,016 + -0.8 20,016 + +0.0 20,016 + -1.0 20,017 - -0.4 20,301 + MPMX19_05348 0.21 -1.3 20,301 + MPMX19_05348 0.21 -0.4 20,301 + MPMX19_05348 0.21 -0.8
Or see this region's nucleotide sequence