Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05327

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05326 and MPMX19_05327 are separated by 186 nucleotidesMPMX19_05327 and MPMX19_05328 are separated by 15 nucleotidesMPMX19_05328 and MPMX19_05329 are separated by 157 nucleotides MPMX19_05326: MPMX19_05326 - S-(hydroxymethyl)glutathione dehydrogenase, at 867,097 to 868,215 _05326 MPMX19_05327: MPMX19_05327 - HTH-type transcriptional regulator PgrR, at 868,402 to 869,301 _05327 MPMX19_05328: MPMX19_05328 - hypothetical protein, at 869,317 to 869,634 _05328 MPMX19_05329: MPMX19_05329 - PTS system fructose-specific EIIB'BC component, at 869,792 to 871,564 _05329 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1 2 3at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.700 kb on - strand, within MPMX19_05326at 867.782 kb on + strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.310 kb on + strandat 868.310 kb on + strandat 868.310 kb on + strandat 868.310 kb on + strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.351 kb on + strandat 868.364 kb on + strandat 868.549 kb on + strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.717 kb on + strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.829 kb on - strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.213 kb on - strandat 869.213 kb on - strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.337 kb on - strandat 869.337 kb on - strandat 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.916 kb on + strandat 869.916 kb on + strandat 869.917 kb on - strandat 869.917 kb on - strandat 869.917 kb on - strandat 870.234 kb on + strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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867,437 + MPMX19_05326 0.30 +1.2
867,437 + MPMX19_05326 0.30 +1.6
867,437 + MPMX19_05326 0.30 -0.2
867,437 + MPMX19_05326 0.30 -0.4
867,437 + MPMX19_05326 0.30 -1.6
867,438 - MPMX19_05326 0.30 -0.6
867,438 - MPMX19_05326 0.30 -0.6
867,438 - MPMX19_05326 0.30 -1.1
867,438 - MPMX19_05326 0.30 -0.9
867,700 - MPMX19_05326 0.54 -0.7
867,782 + MPMX19_05326 0.61 +0.3
867,783 - MPMX19_05326 0.61 -1.1
867,783 - MPMX19_05326 0.61 -1.4
867,809 + MPMX19_05326 0.64 -0.1
867,809 + MPMX19_05326 0.64 +0.4
867,809 + MPMX19_05326 0.64 +0.3
867,809 + MPMX19_05326 0.64 +0.1
867,809 + MPMX19_05326 0.64 -0.3
867,809 + MPMX19_05326 0.64 -0.1
867,809 + MPMX19_05326 0.64 +0.2
867,809 + MPMX19_05326 0.64 -1.9
867,810 - MPMX19_05326 0.64 +1.0
867,810 - MPMX19_05326 0.64 -1.4
867,810 - MPMX19_05326 0.64 +0.3
867,810 - MPMX19_05326 0.64 +0.4
867,810 - MPMX19_05326 0.64 -0.6
867,810 - MPMX19_05326 0.64 +0.3
867,810 - MPMX19_05326 0.64 -0.5
867,810 - MPMX19_05326 0.64 +0.3
867,810 - MPMX19_05326 0.64 -1.6
867,810 - MPMX19_05326 0.64 +0.3
867,950 + MPMX19_05326 0.76 +1.0
867,950 + MPMX19_05326 0.76 +0.6
867,950 + MPMX19_05326 0.76 +0.5
867,950 + MPMX19_05326 0.76 -0.1
867,951 - MPMX19_05326 0.76 +1.5
867,951 - MPMX19_05326 0.76 +0.6
868,079 + MPMX19_05326 0.88 +0.4
868,079 + MPMX19_05326 0.88 +1.3
868,079 + MPMX19_05326 0.88 -0.7
868,079 + MPMX19_05326 0.88 +0.4
868,079 + MPMX19_05326 0.88 -0.4
868,079 + MPMX19_05326 0.88 -1.3
868,080 - MPMX19_05326 0.88 -0.9
868,080 - MPMX19_05326 0.88 -0.5
868,080 - MPMX19_05326 0.88 -0.1
868,080 - MPMX19_05326 0.88 +1.2
868,080 - MPMX19_05326 0.88 +0.9
868,080 - MPMX19_05326 0.88 -0.2
868,310 + -0.9
868,310 + -1.4
868,310 + +0.8
868,310 + +0.3
868,311 - -0.8
868,311 - -0.1
868,311 - -0.7
868,311 - -0.4
868,311 - -0.6
868,311 - +0.4
868,311 - +1.3
868,311 - +0.3
868,351 + -1.4
868,364 + -1.6
868,549 + MPMX19_05327 0.16 -0.9
868,550 - MPMX19_05327 0.16 +3.5
868,550 - MPMX19_05327 0.16 -0.9
868,550 - MPMX19_05327 0.16 +0.5
868,717 + MPMX19_05327 0.35 -0.8
868,718 - MPMX19_05327 0.35 -1.0
868,718 - MPMX19_05327 0.35 +0.3
868,829 - MPMX19_05327 0.47 +0.6
868,924 + MPMX19_05327 0.58 -0.9
868,924 + MPMX19_05327 0.58 +0.3
868,925 - MPMX19_05327 0.58 -0.9
868,925 - MPMX19_05327 0.58 +0.3
868,925 - MPMX19_05327 0.58 -1.1
868,925 - MPMX19_05327 0.58 -0.4
869,125 + MPMX19_05327 0.80 +1.9
869,125 + MPMX19_05327 0.80 +0.7
869,125 + MPMX19_05327 0.80 -0.7
869,126 - MPMX19_05327 0.80 -0.6
869,126 - MPMX19_05327 0.80 -0.0
869,126 - MPMX19_05327 0.80 -0.9
869,126 - MPMX19_05327 0.80 -1.6
869,126 - MPMX19_05327 0.80 +1.3
869,126 - MPMX19_05327 0.80 -1.6
869,128 + MPMX19_05327 0.81 -0.9
869,128 + MPMX19_05327 0.81 -0.7
869,128 + MPMX19_05327 0.81 -0.1
869,128 + MPMX19_05327 0.81 +0.0
869,128 + MPMX19_05327 0.81 -1.1
869,128 + MPMX19_05327 0.81 +0.1
869,129 - MPMX19_05327 0.81 -0.5
869,129 - MPMX19_05327 0.81 -1.2
869,129 - MPMX19_05327 0.81 -2.4
869,129 - MPMX19_05327 0.81 -2.0
869,129 - MPMX19_05327 0.81 -0.6
869,129 - MPMX19_05327 0.81 -0.1
869,129 - MPMX19_05327 0.81 -0.3
869,213 - +0.2
869,213 - -0.2
869,293 + -0.6
869,293 + -0.1
869,293 + -1.3
869,294 - -0.7
869,294 - -0.4
869,294 - +1.2
869,336 + +0.5
869,336 + +0.6
869,336 + +0.9
869,337 - -0.4
869,337 - +0.3
869,388 + MPMX19_05328 0.22 -0.0
869,388 + MPMX19_05328 0.22 -0.6
869,388 + MPMX19_05328 0.22 -0.0
869,389 - MPMX19_05328 0.23 -0.3
869,389 - MPMX19_05328 0.23 -2.4
869,389 - MPMX19_05328 0.23 +0.4
869,389 - MPMX19_05328 0.23 -0.1
869,710 - +0.3
869,710 - +0.9
869,710 - +0.3
869,710 - +0.8
869,713 + +0.0
869,713 + -1.4
869,713 + +0.1
869,713 + -0.4
869,714 - +0.4
869,714 - -1.4
869,714 - -0.1
869,714 - -0.4
869,714 - +0.3
869,714 - +0.0
869,714 - -1.8
869,714 - +0.5
869,714 - -0.7
869,714 - -1.4
869,916 + -0.7
869,916 + +1.3
869,917 - +0.5
869,917 - -0.4
869,917 - +0.9
870,234 + MPMX19_05329 0.25 +0.8
870,235 - MPMX19_05329 0.25 -1.1
870,235 - MPMX19_05329 0.25 +0.8
870,235 - MPMX19_05329 0.25 +1.2
870,235 - MPMX19_05329 0.25 +0.6
870,235 - MPMX19_05329 0.25 -1.8
870,235 - MPMX19_05329 0.25 -1.4
870,235 - MPMX19_05329 0.25 -0.3
870,270 + MPMX19_05329 0.27 +0.2
870,270 + MPMX19_05329 0.27 -0.7
870,270 + MPMX19_05329 0.27 +0.7
870,270 + MPMX19_05329 0.27 +0.4
870,270 + MPMX19_05329 0.27 +0.8
870,271 - MPMX19_05329 0.27 -0.4
870,271 - MPMX19_05329 0.27 +0.3
870,271 - MPMX19_05329 0.27 +0.3

Or see this region's nucleotide sequence