Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05308

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05307 and MPMX19_05308 are separated by 105 nucleotidesMPMX19_05308 and MPMX19_05309 are separated by 55 nucleotides MPMX19_05307: MPMX19_05307 - hypothetical protein, at 843,079 to 844,722 _05307 MPMX19_05308: MPMX19_05308 - Nucleoside triphosphate pyrophosphohydrolase, at 844,828 to 845,637 _05308 MPMX19_05309: MPMX19_05309 - 4,4'-diaponeurosporenoate glycosyltransferase, at 845,693 to 846,844 _05309 Position (kb) 844 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.186 kb on + strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.187 kb on - strand, within MPMX19_05307at 844.223 kb on - strand, within MPMX19_05307at 844.223 kb on - strand, within MPMX19_05307at 844.613 kb on - strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.630 kb on + strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.631 kb on - strandat 844.684 kb on - strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.734 kb on + strandat 844.734 kb on + strandat 844.735 kb on - strandat 844.735 kb on - strandat 844.784 kb on - strandat 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.916 kb on - strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.646 kb on + strandat 845.725 kb on - strandat 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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844,186 + MPMX19_05307 0.67 +0.7
844,186 + MPMX19_05307 0.67 +0.8
844,186 + MPMX19_05307 0.67 +0.3
844,186 + MPMX19_05307 0.67 +0.0
844,186 + MPMX19_05307 0.67 +0.4
844,186 + MPMX19_05307 0.67 -0.7
844,186 + MPMX19_05307 0.67 -0.5
844,186 + MPMX19_05307 0.67 -2.6
844,186 + MPMX19_05307 0.67 -0.1
844,187 - MPMX19_05307 0.67 +0.8
844,187 - MPMX19_05307 0.67 -1.6
844,187 - MPMX19_05307 0.67 -0.1
844,187 - MPMX19_05307 0.67 +0.2
844,187 - MPMX19_05307 0.67 -0.7
844,187 - MPMX19_05307 0.67 +0.4
844,187 - MPMX19_05307 0.67 -2.0
844,223 - MPMX19_05307 0.70 +0.6
844,223 - MPMX19_05307 0.70 -3.5
844,613 - -0.2
844,630 + -1.6
844,630 + -0.7
844,630 + -0.2
844,630 + -0.3
844,630 + -0.7
844,630 + -0.9
844,630 + +1.5
844,630 + -0.1
844,630 + -0.8
844,630 + -1.4
844,630 + -0.6
844,631 - -0.4
844,631 - +1.5
844,631 - -0.3
844,631 - -1.8
844,631 - -0.6
844,631 - +0.9
844,631 - +0.1
844,631 - +0.1
844,631 - +0.4
844,631 - +0.2
844,684 - -0.1
844,720 + -0.7
844,720 + -0.6
844,720 + -1.0
844,720 + +0.2
844,720 + +0.2
844,721 - -0.4
844,721 - -1.1
844,721 - -1.4
844,721 - -0.8
844,721 - +0.8
844,734 + -0.9
844,734 + +0.4
844,735 - -0.3
844,735 - +0.9
844,784 - -0.3
844,915 + MPMX19_05308 0.11 -1.4
844,915 + MPMX19_05308 0.11 -0.8
844,915 + MPMX19_05308 0.11 +1.2
844,915 + MPMX19_05308 0.11 -1.5
844,915 + MPMX19_05308 0.11 -0.9
844,916 - MPMX19_05308 0.11 +0.8
844,951 + MPMX19_05308 0.15 +1.2
844,951 + MPMX19_05308 0.15 +0.3
844,951 + MPMX19_05308 0.15 -0.2
844,951 + MPMX19_05308 0.15 +0.9
844,951 + MPMX19_05308 0.15 -1.2
844,951 + MPMX19_05308 0.15 -0.1
844,951 + MPMX19_05308 0.15 -1.4
844,951 + MPMX19_05308 0.15 -1.1
844,951 + MPMX19_05308 0.15 -0.8
844,951 + MPMX19_05308 0.15 -1.5
844,952 - MPMX19_05308 0.15 -1.1
844,952 - MPMX19_05308 0.15 +0.4
844,952 - MPMX19_05308 0.15 -0.4
844,952 - MPMX19_05308 0.15 -0.5
844,952 - MPMX19_05308 0.15 -0.1
844,952 - MPMX19_05308 0.15 -0.7
844,952 - MPMX19_05308 0.15 +1.0
844,952 - MPMX19_05308 0.15 -0.5
844,952 - MPMX19_05308 0.15 -0.2
845,032 + MPMX19_05308 0.25 -0.5
845,032 + MPMX19_05308 0.25 +1.0
845,032 + MPMX19_05308 0.25 -0.6
845,032 + MPMX19_05308 0.25 +1.7
845,032 + MPMX19_05308 0.25 -1.3
845,032 + MPMX19_05308 0.25 -0.8
845,032 + MPMX19_05308 0.25 +0.1
845,032 + MPMX19_05308 0.25 +0.3
845,032 + MPMX19_05308 0.25 -0.1
845,033 - MPMX19_05308 0.25 -0.4
845,033 - MPMX19_05308 0.25 -0.6
845,033 - MPMX19_05308 0.25 -0.6
845,033 - MPMX19_05308 0.25 -0.7
845,033 - MPMX19_05308 0.25 +0.3
845,033 - MPMX19_05308 0.25 +1.9
845,033 - MPMX19_05308 0.25 -1.4
845,033 - MPMX19_05308 0.25 -0.0
845,033 - MPMX19_05308 0.25 -2.4
845,033 - MPMX19_05308 0.25 -0.6
845,035 + MPMX19_05308 0.26 +0.9
845,035 + MPMX19_05308 0.26 -1.1
845,035 + MPMX19_05308 0.26 -1.7
845,035 + MPMX19_05308 0.26 -0.6
845,035 + MPMX19_05308 0.26 -0.4
845,035 + MPMX19_05308 0.26 +0.3
845,036 - MPMX19_05308 0.26 -0.8
845,036 - MPMX19_05308 0.26 -1.0
845,036 - MPMX19_05308 0.26 +0.8
845,646 + +0.2
845,725 - -0.3
846,075 + MPMX19_05309 0.33 +0.2
846,075 + MPMX19_05309 0.33 -0.7
846,075 + MPMX19_05309 0.33 +0.9
846,075 + MPMX19_05309 0.33 -0.1
846,076 - MPMX19_05309 0.33 -0.2
846,076 - MPMX19_05309 0.33 -0.1
846,076 - MPMX19_05309 0.33 -0.2
846,076 - MPMX19_05309 0.33 -0.9
846,076 - MPMX19_05309 0.33 -0.1
846,076 - MPMX19_05309 0.33 -1.1
846,207 + MPMX19_05309 0.45 +0.1
846,207 + MPMX19_05309 0.45 -0.7
846,207 + MPMX19_05309 0.45 -1.7
846,207 + MPMX19_05309 0.45 +0.6
846,207 + MPMX19_05309 0.45 -0.7
846,208 - MPMX19_05309 0.45 -0.8
846,208 - MPMX19_05309 0.45 -0.6
846,208 - MPMX19_05309 0.45 -1.0
846,208 - MPMX19_05309 0.45 -0.9
846,208 - MPMX19_05309 0.45 -1.1
846,208 - MPMX19_05309 0.45 -0.8

Or see this region's nucleotide sequence