Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05290

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05288 and MPMX19_05289 are separated by 193 nucleotidesMPMX19_05289 and MPMX19_05290 are separated by 85 nucleotidesMPMX19_05290 and MPMX19_05291 are separated by 45 nucleotidesMPMX19_05291 and MPMX19_05292 overlap by 8 nucleotides MPMX19_05288: MPMX19_05288 - Uptake hydrogenase small subunit, at 823,637 to 824,710 _05288 MPMX19_05289: MPMX19_05289 - hypothetical protein, at 824,904 to 825,452 _05289 MPMX19_05290: MPMX19_05290 - Hydrogenase transcriptional regulatory protein hupR1, at 825,538 to 827,025 _05290 MPMX19_05291: MPMX19_05291 - Hydrogenase maturation factor HybF, at 827,071 to 827,412 _05291 MPMX19_05292: MPMX19_05292 - hypothetical protein, at 827,405 to 828,241 _05292 Position (kb) 825 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 824.594 kb on + strand, within MPMX19_05288at 824.640 kb on + strandat 824.640 kb on + strandat 824.640 kb on + strandat 824.640 kb on + strandat 824.640 kb on + strandat 824.640 kb on + strandat 824.641 kb on - strandat 824.641 kb on - strandat 824.641 kb on - strandat 824.688 kb on + strandat 824.688 kb on + strandat 824.688 kb on + strandat 824.688 kb on + strandat 824.688 kb on + strandat 824.689 kb on - strandat 824.776 kb on + strandat 824.776 kb on + strandat 824.776 kb on + strandat 824.776 kb on + strandat 824.776 kb on + strandat 824.776 kb on + strandat 824.777 kb on - strandat 824.794 kb on + strandat 824.794 kb on + strandat 824.795 kb on - strandat 824.832 kb on + strandat 824.832 kb on + strandat 824.833 kb on - strandat 825.016 kb on + strand, within MPMX19_05289at 825.017 kb on - strand, within MPMX19_05289at 825.017 kb on - strand, within MPMX19_05289at 825.017 kb on - strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.163 kb on + strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.164 kb on - strand, within MPMX19_05289at 825.286 kb on + strand, within MPMX19_05289at 825.305 kb on + strand, within MPMX19_05289at 825.411 kb on + strandat 825.411 kb on + strandat 825.412 kb on - strandat 825.412 kb on - strandat 825.412 kb on - strandat 825.412 kb on - strandat 825.452 kb on + strandat 825.452 kb on + strandat 825.452 kb on + strandat 825.452 kb on + strandat 825.452 kb on + strandat 825.453 kb on - strandat 825.453 kb on - strandat 825.453 kb on - strandat 825.453 kb on - strandat 825.572 kb on + strandat 825.896 kb on + strand, within MPMX19_05290at 825.896 kb on + strand, within MPMX19_05290at 825.897 kb on - strand, within MPMX19_05290at 825.897 kb on - strand, within MPMX19_05290at 825.897 kb on - strand, within MPMX19_05290at 825.976 kb on - strand, within MPMX19_05290at 826.053 kb on - strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.055 kb on + strand, within MPMX19_05290at 826.056 kb on - strand, within MPMX19_05290at 826.056 kb on - strand, within MPMX19_05290at 826.056 kb on - strand, within MPMX19_05290at 826.056 kb on - strand, within MPMX19_05290at 826.370 kb on + strand, within MPMX19_05290at 826.370 kb on + strand, within MPMX19_05290at 826.371 kb on - strand, within MPMX19_05290at 826.371 kb on - strand, within MPMX19_05290at 826.371 kb on - strand, within MPMX19_05290at 826.400 kb on + strand, within MPMX19_05290at 826.547 kb on + strand, within MPMX19_05290at 826.769 kb on + strand, within MPMX19_05290at 826.769 kb on + strand, within MPMX19_05290at 826.770 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 826.832 kb on - strand, within MPMX19_05290at 827.661 kb on + strand, within MPMX19_05292at 827.661 kb on + strand, within MPMX19_05292at 827.661 kb on + strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.662 kb on - strand, within MPMX19_05292at 827.700 kb on + strand, within MPMX19_05292

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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824,594 + MPMX19_05288 0.89 -1.2
824,640 + -0.7
824,640 + -0.1
824,640 + -0.2
824,640 + -0.7
824,640 + -0.7
824,640 + +0.9
824,641 - -0.3
824,641 - -1.8
824,641 - -0.6
824,688 + -0.5
824,688 + -0.4
824,688 + -2.0
824,688 + -0.2
824,688 + -1.9
824,689 - +0.1
824,776 + +0.3
824,776 + -2.9
824,776 + +0.4
824,776 + -0.7
824,776 + -0.7
824,776 + -0.9
824,777 - -1.0
824,794 + -0.4
824,794 + -1.2
824,795 - -1.1
824,832 + +0.2
824,832 + +1.1
824,833 - -1.4
825,016 + MPMX19_05289 0.20 -1.3
825,017 - MPMX19_05289 0.21 +1.4
825,017 - MPMX19_05289 0.21 -0.5
825,017 - MPMX19_05289 0.21 +1.8
825,163 + MPMX19_05289 0.47 -0.8
825,163 + MPMX19_05289 0.47 -1.4
825,163 + MPMX19_05289 0.47 +2.5
825,163 + MPMX19_05289 0.47 -0.6
825,163 + MPMX19_05289 0.47 -1.3
825,163 + MPMX19_05289 0.47 -0.2
825,163 + MPMX19_05289 0.47 +0.6
825,163 + MPMX19_05289 0.47 +0.4
825,163 + MPMX19_05289 0.47 +0.2
825,163 + MPMX19_05289 0.47 -0.0
825,163 + MPMX19_05289 0.47 -0.1
825,163 + MPMX19_05289 0.47 -0.8
825,163 + MPMX19_05289 0.47 -0.2
825,163 + MPMX19_05289 0.47 -0.3
825,163 + MPMX19_05289 0.47 +1.1
825,163 + MPMX19_05289 0.47 -0.7
825,163 + MPMX19_05289 0.47 +0.9
825,163 + MPMX19_05289 0.47 +0.3
825,163 + MPMX19_05289 0.47 -2.0
825,164 - MPMX19_05289 0.47 -2.0
825,164 - MPMX19_05289 0.47 -0.8
825,164 - MPMX19_05289 0.47 -0.8
825,164 - MPMX19_05289 0.47 -1.4
825,164 - MPMX19_05289 0.47 -0.4
825,164 - MPMX19_05289 0.47 -1.7
825,164 - MPMX19_05289 0.47 -0.4
825,164 - MPMX19_05289 0.47 -0.4
825,164 - MPMX19_05289 0.47 +1.0
825,164 - MPMX19_05289 0.47 +0.8
825,164 - MPMX19_05289 0.47 +0.3
825,164 - MPMX19_05289 0.47 -1.1
825,164 - MPMX19_05289 0.47 +0.9
825,164 - MPMX19_05289 0.47 -0.5
825,164 - MPMX19_05289 0.47 +0.0
825,164 - MPMX19_05289 0.47 +0.6
825,164 - MPMX19_05289 0.47 +1.9
825,164 - MPMX19_05289 0.47 -1.3
825,164 - MPMX19_05289 0.47 +0.4
825,164 - MPMX19_05289 0.47 -0.5
825,164 - MPMX19_05289 0.47 -1.4
825,164 - MPMX19_05289 0.47 -1.6
825,164 - MPMX19_05289 0.47 -0.3
825,164 - MPMX19_05289 0.47 -1.0
825,164 - MPMX19_05289 0.47 +0.7
825,286 + MPMX19_05289 0.70 -2.1
825,305 + MPMX19_05289 0.73 -0.1
825,411 + -2.1
825,411 + +0.5
825,412 - +0.1
825,412 - +1.1
825,412 - -1.6
825,412 - +0.9
825,452 + -2.3
825,452 + -0.1
825,452 + -0.8
825,452 + -0.3
825,452 + +0.7
825,453 - +0.6
825,453 - -0.4
825,453 - -1.7
825,453 - +0.1
825,572 + +0.2
825,896 + MPMX19_05290 0.24 -0.7
825,896 + MPMX19_05290 0.24 -1.4
825,897 - MPMX19_05290 0.24 +0.2
825,897 - MPMX19_05290 0.24 +0.7
825,897 - MPMX19_05290 0.24 +0.9
825,976 - MPMX19_05290 0.29 +0.6
826,053 - MPMX19_05290 0.35 +0.6
826,055 + MPMX19_05290 0.35 -1.0
826,055 + MPMX19_05290 0.35 -0.5
826,055 + MPMX19_05290 0.35 -0.1
826,055 + MPMX19_05290 0.35 -1.9
826,055 + MPMX19_05290 0.35 -0.4
826,055 + MPMX19_05290 0.35 +0.9
826,055 + MPMX19_05290 0.35 -0.1
826,055 + MPMX19_05290 0.35 -0.8
826,056 - MPMX19_05290 0.35 +0.1
826,056 - MPMX19_05290 0.35 +0.6
826,056 - MPMX19_05290 0.35 +1.9
826,056 - MPMX19_05290 0.35 -0.5
826,370 + MPMX19_05290 0.56 -0.1
826,370 + MPMX19_05290 0.56 +0.6
826,371 - MPMX19_05290 0.56 -0.9
826,371 - MPMX19_05290 0.56 -0.3
826,371 - MPMX19_05290 0.56 -1.2
826,400 + MPMX19_05290 0.58 -0.1
826,547 + MPMX19_05290 0.68 +0.4
826,769 + MPMX19_05290 0.83 -1.0
826,769 + MPMX19_05290 0.83 -0.3
826,770 - MPMX19_05290 0.83 +0.7
826,832 - MPMX19_05290 0.87 -0.1
826,832 - MPMX19_05290 0.87 -0.2
826,832 - MPMX19_05290 0.87 -2.1
826,832 - MPMX19_05290 0.87 +0.3
826,832 - MPMX19_05290 0.87 +0.3
826,832 - MPMX19_05290 0.87 -0.8
826,832 - MPMX19_05290 0.87 +1.2
826,832 - MPMX19_05290 0.87 -0.8
827,661 + MPMX19_05292 0.31 -0.6
827,661 + MPMX19_05292 0.31 +0.8
827,661 + MPMX19_05292 0.31 -2.6
827,662 - MPMX19_05292 0.31 -0.6
827,662 - MPMX19_05292 0.31 -0.5
827,662 - MPMX19_05292 0.31 -0.7
827,662 - MPMX19_05292 0.31 -0.4
827,662 - MPMX19_05292 0.31 -1.6
827,662 - MPMX19_05292 0.31 -0.4
827,662 - MPMX19_05292 0.31 +0.3
827,662 - MPMX19_05292 0.31 -0.4
827,700 + MPMX19_05292 0.35 +0.3

Or see this region's nucleotide sequence