Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05281

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05280 and MPMX19_05281 are separated by 30 nucleotidesMPMX19_05281 and MPMX19_05282 are separated by 17 nucleotides MPMX19_05280: MPMX19_05280 - hypothetical protein, at 813,657 to 814,676 _05280 MPMX19_05281: MPMX19_05281 - hypothetical protein, at 814,707 to 815,273 _05281 MPMX19_05282: MPMX19_05282 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 815,291 to 816,349 _05282 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 814.088 kb on + strand, within MPMX19_05280at 814.088 kb on + strand, within MPMX19_05280at 814.198 kb on + strand, within MPMX19_05280at 814.198 kb on + strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.303 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.579 kb on + strandat 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 815.140 kb on + strand, within MPMX19_05281at 815.141 kb on - strand, within MPMX19_05281at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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813,823 + MPMX19_05280 0.16 +0.1
813,823 + MPMX19_05280 0.16 -1.7
813,823 + MPMX19_05280 0.16 +0.3
813,823 + MPMX19_05280 0.16 -1.3
813,823 + MPMX19_05280 0.16 -1.5
813,823 + MPMX19_05280 0.16 -0.3
813,823 + MPMX19_05280 0.16 -0.6
813,824 - MPMX19_05280 0.16 +0.9
813,824 - MPMX19_05280 0.16 +0.3
813,824 - MPMX19_05280 0.16 +0.2
813,824 - MPMX19_05280 0.16 -0.1
813,824 - MPMX19_05280 0.16 +2.4
813,824 - MPMX19_05280 0.16 -0.1
813,896 - MPMX19_05280 0.23 -1.3
813,896 - MPMX19_05280 0.23 -0.7
813,896 - MPMX19_05280 0.23 +0.3
814,088 + MPMX19_05280 0.42 +2.3
814,088 + MPMX19_05280 0.42 +0.2
814,198 + MPMX19_05280 0.53 +0.1
814,198 + MPMX19_05280 0.53 -0.3
814,199 - MPMX19_05280 0.53 -3.0
814,199 - MPMX19_05280 0.53 -1.6
814,199 - MPMX19_05280 0.53 -0.5
814,303 + MPMX19_05280 0.63 +0.6
814,318 + MPMX19_05280 0.65 -0.4
814,318 + MPMX19_05280 0.65 +0.5
814,318 + MPMX19_05280 0.65 -0.7
814,318 + MPMX19_05280 0.65 -0.1
814,318 + MPMX19_05280 0.65 +0.3
814,318 + MPMX19_05280 0.65 -1.7
814,318 + MPMX19_05280 0.65 -0.8
814,318 + MPMX19_05280 0.65 -0.6
814,318 + MPMX19_05280 0.65 +1.0
814,318 + MPMX19_05280 0.65 -0.1
814,318 + MPMX19_05280 0.65 -0.3
814,319 - MPMX19_05280 0.65 +1.5
814,319 - MPMX19_05280 0.65 -1.3
814,319 - MPMX19_05280 0.65 -0.2
814,319 - MPMX19_05280 0.65 -1.3
814,319 - MPMX19_05280 0.65 -1.1
814,319 - MPMX19_05280 0.65 -1.2
814,319 - MPMX19_05280 0.65 -1.4
814,579 + -0.9
814,912 + MPMX19_05281 0.36 -0.4
814,912 + MPMX19_05281 0.36 -0.4
814,912 + MPMX19_05281 0.36 +1.2
814,912 + MPMX19_05281 0.36 -2.0
814,912 + MPMX19_05281 0.36 -2.9
814,912 + MPMX19_05281 0.36 +0.7
814,912 + MPMX19_05281 0.36 -1.1
814,912 + MPMX19_05281 0.36 -0.2
814,913 - MPMX19_05281 0.36 -1.4
814,913 - MPMX19_05281 0.36 -1.2
814,913 - MPMX19_05281 0.36 +0.6
814,913 - MPMX19_05281 0.36 -0.7
814,913 - MPMX19_05281 0.36 -0.5
814,913 - MPMX19_05281 0.36 -0.1
814,913 - MPMX19_05281 0.36 +0.0
814,913 - MPMX19_05281 0.36 +0.3
814,913 - MPMX19_05281 0.36 -0.9
814,913 - MPMX19_05281 0.36 -0.6
814,913 - MPMX19_05281 0.36 -1.6
814,913 - MPMX19_05281 0.36 -0.5
815,140 + MPMX19_05281 0.76 -0.2
815,141 - MPMX19_05281 0.77 +1.0
816,162 + MPMX19_05282 0.82 -0.3
816,162 + MPMX19_05282 0.82 +0.2
816,162 + MPMX19_05282 0.82 +0.2
816,162 + MPMX19_05282 0.82 +0.4
816,162 + MPMX19_05282 0.82 -0.2
816,163 - MPMX19_05282 0.82 -0.4
816,163 - MPMX19_05282 0.82 +1.1
816,163 - MPMX19_05282 0.82 +1.3
816,163 - MPMX19_05282 0.82 -0.7

Or see this region's nucleotide sequence