Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05231

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05230 and MPMX19_05231 are separated by 272 nucleotidesMPMX19_05231 and MPMX19_05232 are separated by 32 nucleotides MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001 _05230 MPMX19_05231: MPMX19_05231 - 1,2-epoxyphenylacetyl-CoA isomerase, at 757,274 to 758,089 _05231 MPMX19_05232: MPMX19_05232 - Beta-ketothiolase BktB, at 758,122 to 759,303 _05232 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1 2at 756.349 kb on + strand, within MPMX19_05230at 756.349 kb on + strand, within MPMX19_05230at 756.349 kb on + strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.583 kb on + strand, within MPMX19_05230at 756.583 kb on + strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.791 kb on + strand, within MPMX19_05230at 756.792 kb on - strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.824 kb on - strand, within MPMX19_05230at 756.850 kb on + strand, within MPMX19_05230at 756.850 kb on + strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 757.184 kb on - strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.253 kb on - strandat 757.582 kb on - strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.925 kb on + strand, within MPMX19_05231at 757.926 kb on - strand, within MPMX19_05231at 758.097 kb on + strandat 758.097 kb on + strandat 758.097 kb on + strandat 758.097 kb on + strandat 758.097 kb on + strandat 758.097 kb on + strandat 758.097 kb on + strandat 758.098 kb on - strandat 758.098 kb on - strandat 758.098 kb on - strandat 758.098 kb on - strandat 758.098 kb on - strandat 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.317 kb on + strand, within MPMX19_05232at 758.318 kb on - strand, within MPMX19_05232at 758.318 kb on - strand, within MPMX19_05232at 758.318 kb on - strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.378 kb on + strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.379 kb on - strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.494 kb on + strand, within MPMX19_05232at 758.495 kb on - strand, within MPMX19_05232at 758.495 kb on - strand, within MPMX19_05232at 758.551 kb on + strand, within MPMX19_05232at 758.551 kb on + strand, within MPMX19_05232at 758.551 kb on + strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.627 kb on - strand, within MPMX19_05232at 758.957 kb on - strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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756,349 + MPMX19_05230 0.47 -0.6
756,349 + MPMX19_05230 0.47 +0.6
756,349 + MPMX19_05230 0.47 -2.4
756,350 - MPMX19_05230 0.47 +0.9
756,350 - MPMX19_05230 0.47 -0.5
756,350 - MPMX19_05230 0.47 -1.0
756,583 + MPMX19_05230 0.66 +0.5
756,583 + MPMX19_05230 0.66 -1.3
756,584 - MPMX19_05230 0.66 +0.4
756,584 - MPMX19_05230 0.66 +0.7
756,584 - MPMX19_05230 0.66 +0.9
756,598 + MPMX19_05230 0.67 -1.3
756,598 + MPMX19_05230 0.67 +1.2
756,598 + MPMX19_05230 0.67 -0.1
756,598 + MPMX19_05230 0.67 +0.1
756,598 + MPMX19_05230 0.67 -1.1
756,598 + MPMX19_05230 0.67 +0.6
756,598 + MPMX19_05230 0.67 -0.4
756,598 + MPMX19_05230 0.67 -1.3
756,599 - MPMX19_05230 0.67 -0.2
756,599 - MPMX19_05230 0.67 +0.6
756,599 - MPMX19_05230 0.67 -0.7
756,599 - MPMX19_05230 0.67 -0.4
756,599 - MPMX19_05230 0.67 -0.7
756,599 - MPMX19_05230 0.67 -1.6
756,599 - MPMX19_05230 0.67 +1.3
756,599 - MPMX19_05230 0.67 -0.1
756,599 - MPMX19_05230 0.67 -1.2
756,599 - MPMX19_05230 0.67 +1.3
756,667 + MPMX19_05230 0.73 -1.1
756,667 + MPMX19_05230 0.73 -1.6
756,667 + MPMX19_05230 0.73 -1.0
756,667 + MPMX19_05230 0.73 -0.8
756,667 + MPMX19_05230 0.73 -0.2
756,667 + MPMX19_05230 0.73 -0.1
756,667 + MPMX19_05230 0.73 -1.3
756,667 + MPMX19_05230 0.73 -0.4
756,667 + MPMX19_05230 0.73 -1.3
756,667 - MPMX19_05230 0.73 -1.0
756,668 - MPMX19_05230 0.73 -0.6
756,668 - MPMX19_05230 0.73 +1.9
756,668 - MPMX19_05230 0.73 -0.3
756,668 - MPMX19_05230 0.73 -1.4
756,668 - MPMX19_05230 0.73 +0.4
756,668 - MPMX19_05230 0.73 +0.5
756,668 - MPMX19_05230 0.73 -0.4
756,668 - MPMX19_05230 0.73 -0.8
756,668 - MPMX19_05230 0.73 +0.2
756,791 + MPMX19_05230 0.83 -2.1
756,792 - MPMX19_05230 0.83 -0.6
756,823 + MPMX19_05230 0.86 +1.6
756,823 + MPMX19_05230 0.86 +0.2
756,823 + MPMX19_05230 0.86 -1.2
756,823 + MPMX19_05230 0.86 -1.3
756,823 + MPMX19_05230 0.86 -0.9
756,824 - MPMX19_05230 0.86 +0.1
756,850 + MPMX19_05230 0.88 -0.5
756,850 + MPMX19_05230 0.88 +0.6
756,851 - MPMX19_05230 0.88 -0.5
756,851 - MPMX19_05230 0.88 +0.0
756,851 - MPMX19_05230 0.88 +1.2
756,851 - MPMX19_05230 0.88 -0.3
756,851 - MPMX19_05230 0.88 -1.4
756,853 + MPMX19_05230 0.88 +0.7
756,853 + MPMX19_05230 0.88 -0.4
756,853 + MPMX19_05230 0.88 -0.6
756,853 + MPMX19_05230 0.88 -2.6
756,853 + MPMX19_05230 0.88 -1.0
756,853 + MPMX19_05230 0.88 +0.2
756,853 + MPMX19_05230 0.88 -0.6
756,853 + MPMX19_05230 0.88 -1.0
756,853 + MPMX19_05230 0.88 -0.1
756,853 + MPMX19_05230 0.88 +0.9
756,853 + MPMX19_05230 0.88 -0.7
756,854 - MPMX19_05230 0.88 +0.0
756,854 - MPMX19_05230 0.88 +1.0
756,854 - MPMX19_05230 0.88 +0.7
756,854 - MPMX19_05230 0.88 +1.1
756,854 - MPMX19_05230 0.88 +0.3
756,854 - MPMX19_05230 0.88 -0.2
756,854 - MPMX19_05230 0.88 -0.7
756,854 - MPMX19_05230 0.88 +1.4
757,184 - -2.5
757,238 + -0.8
757,238 + -1.3
757,238 + -0.4
757,238 + +0.5
757,238 + -0.1
757,238 + +0.4
757,238 + +1.0
757,238 + -2.1
757,239 - -1.1
757,239 - +0.3
757,239 - -1.3
757,239 - +0.1
757,239 - +0.1
757,239 - -1.1
757,239 - +0.5
757,239 - -1.1
757,239 - -0.1
757,239 - -0.6
757,239 - +0.4
757,239 - -1.1
757,239 - +0.2
757,253 - +0.2
757,582 - MPMX19_05231 0.38 +0.3
757,706 + MPMX19_05231 0.53 -1.6
757,706 + MPMX19_05231 0.53 -0.2
757,706 + MPMX19_05231 0.53 +0.3
757,706 + MPMX19_05231 0.53 +0.1
757,706 + MPMX19_05231 0.53 +0.1
757,706 + MPMX19_05231 0.53 -0.3
757,706 + MPMX19_05231 0.53 -0.6
757,707 - MPMX19_05231 0.53 -1.8
757,707 - MPMX19_05231 0.53 +0.7
757,707 - MPMX19_05231 0.53 +0.1
757,707 - MPMX19_05231 0.53 -0.3
757,707 - MPMX19_05231 0.53 +0.9
757,707 - MPMX19_05231 0.53 +0.3
757,707 - MPMX19_05231 0.53 +0.2
757,707 - MPMX19_05231 0.53 +0.3
757,707 - MPMX19_05231 0.53 +0.7
757,707 - MPMX19_05231 0.53 +0.6
757,707 - MPMX19_05231 0.53 +0.5
757,707 - MPMX19_05231 0.53 +0.8
757,707 - MPMX19_05231 0.53 +0.7
757,707 - MPMX19_05231 0.53 +0.2
757,925 + MPMX19_05231 0.80 +0.3
757,926 - MPMX19_05231 0.80 +0.9
758,097 + +1.2
758,097 + +0.6
758,097 + -1.1
758,097 + -1.0
758,097 + +1.3
758,097 + +0.1
758,097 + -0.9
758,098 - -1.3
758,098 - -1.3
758,098 - -2.3
758,098 - -0.3
758,098 - +1.9
758,317 + MPMX19_05232 0.16 -0.7
758,317 + MPMX19_05232 0.16 +1.5
758,317 + MPMX19_05232 0.16 +0.0
758,317 + MPMX19_05232 0.16 +0.1
758,317 + MPMX19_05232 0.16 +0.2
758,317 + MPMX19_05232 0.16 -0.2
758,317 + MPMX19_05232 0.16 +0.3
758,317 + MPMX19_05232 0.16 +0.5
758,317 + MPMX19_05232 0.16 -0.3
758,318 - MPMX19_05232 0.17 -0.8
758,318 - MPMX19_05232 0.17 +0.9
758,318 - MPMX19_05232 0.17 -0.0
758,378 + MPMX19_05232 0.22 -0.4
758,378 + MPMX19_05232 0.22 +0.7
758,378 + MPMX19_05232 0.22 -1.6
758,378 + MPMX19_05232 0.22 -0.1
758,378 + MPMX19_05232 0.22 +0.1
758,378 + MPMX19_05232 0.22 -0.4
758,378 + MPMX19_05232 0.22 -0.9
758,378 + MPMX19_05232 0.22 +0.2
758,379 - MPMX19_05232 0.22 -0.7
758,379 - MPMX19_05232 0.22 +0.5
758,379 - MPMX19_05232 0.22 -0.3
758,379 - MPMX19_05232 0.22 +0.3
758,379 - MPMX19_05232 0.22 +0.6
758,379 - MPMX19_05232 0.22 -0.2
758,379 - MPMX19_05232 0.22 +0.3
758,379 - MPMX19_05232 0.22 -1.2
758,379 - MPMX19_05232 0.22 -2.5
758,379 - MPMX19_05232 0.22 -0.7
758,379 - MPMX19_05232 0.22 -0.2
758,379 - MPMX19_05232 0.22 -1.3
758,379 - MPMX19_05232 0.22 -0.6
758,494 + MPMX19_05232 0.31 +0.2
758,494 + MPMX19_05232 0.31 +0.9
758,494 + MPMX19_05232 0.31 -1.7
758,494 + MPMX19_05232 0.31 -1.0
758,494 + MPMX19_05232 0.31 -0.2
758,494 + MPMX19_05232 0.31 -1.0
758,495 - MPMX19_05232 0.32 -0.9
758,495 - MPMX19_05232 0.32 +0.9
758,551 + MPMX19_05232 0.36 +0.1
758,551 + MPMX19_05232 0.36 -0.3
758,551 + MPMX19_05232 0.36 +0.4
758,552 - MPMX19_05232 0.36 +0.0
758,552 - MPMX19_05232 0.36 +0.4
758,552 - MPMX19_05232 0.36 -0.2
758,552 - MPMX19_05232 0.36 -2.4
758,552 - MPMX19_05232 0.36 -0.9
758,552 - MPMX19_05232 0.36 -1.5
758,552 - MPMX19_05232 0.36 -0.4
758,552 - MPMX19_05232 0.36 -0.4
758,552 - MPMX19_05232 0.36 +0.7
758,627 - MPMX19_05232 0.43 -1.0
758,957 - MPMX19_05232 0.71 -2.4
758,983 + MPMX19_05232 0.73 -1.7
758,983 + MPMX19_05232 0.73 +0.1
758,983 + MPMX19_05232 0.73 -0.3
758,983 + MPMX19_05232 0.73 -0.6
758,983 + MPMX19_05232 0.73 -0.3
758,983 + MPMX19_05232 0.73 -2.2
758,983 + MPMX19_05232 0.73 -1.7
758,983 + MPMX19_05232 0.73 -0.0
758,983 + MPMX19_05232 0.73 +0.3
758,984 - MPMX19_05232 0.73 -1.4
758,984 - MPMX19_05232 0.73 -1.6
758,984 - MPMX19_05232 0.73 -0.3
758,984 - MPMX19_05232 0.73 +0.4
758,984 - MPMX19_05232 0.73 +0.3
758,984 - MPMX19_05232 0.73 +0.7
758,984 - MPMX19_05232 0.73 +0.9
758,984 - MPMX19_05232 0.73 -1.1
758,984 - MPMX19_05232 0.73 +1.5
758,984 - MPMX19_05232 0.73 -0.9

Or see this region's nucleotide sequence