Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05212 and MPMX19_05213 are separated by 16 nucleotides MPMX19_05213 and MPMX19_05214 overlap by 11 nucleotides MPMX19_05214 and MPMX19_05215 overlap by 26 nucleotides MPMX19_05215 and MPMX19_05216 are separated by 38 nucleotides
MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018
_05212
MPMX19_05213: MPMX19_05213 - hypothetical protein, at 740,035 to 740,313
_05213
MPMX19_05214: MPMX19_05214 - ECF RNA polymerase sigma factor SigE, at 740,303 to 740,983
_05214
MPMX19_05215: MPMX19_05215 - hypothetical protein, at 740,958 to 741,437
_05215
MPMX19_05216: MPMX19_05216 - hypothetical protein, at 741,476 to 743,158
_05216
Position (kb) 740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 739.419 kb on + strand, within MPMX19_05212 at 739.419 kb on + strand, within MPMX19_05212 at 739.419 kb on + strand, within MPMX19_05212 at 739.419 kb on + strand, within MPMX19_05212 at 739.419 kb on + strand, within MPMX19_05212 at 739.419 kb on + strand, within MPMX19_05212 at 739.420 kb on - strand, within MPMX19_05212 at 739.420 kb on - strand, within MPMX19_05212 at 739.420 kb on - strand, within MPMX19_05212 at 739.420 kb on - strand, within MPMX19_05212 at 739.614 kb on + strand, within MPMX19_05212 at 739.614 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.680 kb on + strand, within MPMX19_05212 at 739.681 kb on - strand, within MPMX19_05212 at 739.681 kb on - strand, within MPMX19_05212 at 739.681 kb on - strand, within MPMX19_05212 at 739.737 kb on + strand, within MPMX19_05212 at 739.737 kb on + strand, within MPMX19_05212 at 739.737 kb on + strand, within MPMX19_05212 at 739.737 kb on + strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 739.738 kb on - strand, within MPMX19_05212 at 740.023 kb on + strand at 740.023 kb on + strand at 740.023 kb on + strand at 740.023 kb on + strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.025 kb on + strand at 740.025 kb on + strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.036 kb on + strand at 740.036 kb on + strand at 740.036 kb on + strand at 740.037 kb on - strand at 740.393 kb on + strand, within MPMX19_05214 at 740.393 kb on + strand, within MPMX19_05214 at 740.394 kb on - strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.455 kb on - strand, within MPMX19_05214 at 740.455 kb on - strand, within MPMX19_05214 at 740.646 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.814 kb on + strand, within MPMX19_05214 at 740.815 kb on - strand, within MPMX19_05214 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.182 kb on - strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.350 kb on - strand, within MPMX19_05215 at 741.350 kb on - strand, within MPMX19_05215 at 741.400 kb on + strand at 741.401 kb on - strand at 741.401 kb on - strand at 741.401 kb on - strand at 741.421 kb on + strand at 741.451 kb on + strand at 741.452 kb on - strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.558 kb on + strand at 741.558 kb on + strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.562 kb on - strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.583 kb on - strand at 741.583 kb on - strand at 741.678 kb on + strand, within MPMX19_05216 at 741.678 kb on + strand, within MPMX19_05216 at 741.678 kb on + strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.768 kb on + strand, within MPMX19_05216 at 741.769 kb on - strand, within MPMX19_05216 at 741.769 kb on - strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.890 kb on + strand, within MPMX19_05216 at 741.934 kb on - strand, within MPMX19_05216 at 741.934 kb on - strand, within MPMX19_05216
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 739,419 + MPMX19_05212 0.74 +0.6 739,419 + MPMX19_05212 0.74 -0.8 739,419 + MPMX19_05212 0.74 -0.7 739,419 + MPMX19_05212 0.74 +0.7 739,419 + MPMX19_05212 0.74 -2.3 739,419 + MPMX19_05212 0.74 -0.2 739,420 - MPMX19_05212 0.74 -0.4 739,420 - MPMX19_05212 0.74 -0.9 739,420 - MPMX19_05212 0.74 -0.9 739,420 - MPMX19_05212 0.74 -1.1 739,614 + MPMX19_05212 0.82 -2.1 739,614 + MPMX19_05212 0.82 -1.4 739,680 + MPMX19_05212 0.85 -0.4 739,680 + MPMX19_05212 0.85 -0.3 739,680 + MPMX19_05212 0.85 +0.1 739,680 + MPMX19_05212 0.85 +0.3 739,680 + MPMX19_05212 0.85 +0.1 739,680 + MPMX19_05212 0.85 +1.7 739,681 - MPMX19_05212 0.85 -1.4 739,681 - MPMX19_05212 0.85 -1.6 739,681 - MPMX19_05212 0.85 +0.7 739,737 + MPMX19_05212 0.88 -0.0 739,737 + MPMX19_05212 0.88 -0.4 739,737 + MPMX19_05212 0.88 -1.4 739,737 + MPMX19_05212 0.88 -0.3 739,738 - MPMX19_05212 0.88 -0.2 739,738 - MPMX19_05212 0.88 -0.9 739,738 - MPMX19_05212 0.88 -0.8 739,738 - MPMX19_05212 0.88 -0.4 739,738 - MPMX19_05212 0.88 +0.4 739,738 - MPMX19_05212 0.88 -0.4 739,738 - MPMX19_05212 0.88 -0.5 740,023 + -0.2 740,023 + -1.4 740,023 + +0.6 740,023 + -0.4 740,024 - -1.5 740,024 - +0.0 740,024 - +0.1 740,024 - +0.2 740,024 - -0.9 740,024 - +0.2 740,025 + +0.4 740,025 + +1.1 740,026 - -1.5 740,026 - -1.8 740,026 - -0.1 740,026 - -2.6 740,026 - +0.9 740,036 + -1.3 740,036 + -0.3 740,036 + -0.9 740,037 - -1.6 740,393 + MPMX19_05214 0.13 +0.6 740,393 + MPMX19_05214 0.13 -1.6 740,394 - MPMX19_05214 0.13 -0.1 740,402 + MPMX19_05214 0.15 -1.0 740,402 + MPMX19_05214 0.15 +0.4 740,402 + MPMX19_05214 0.15 -0.9 740,402 + MPMX19_05214 0.15 +0.2 740,402 + MPMX19_05214 0.15 +1.5 740,402 + MPMX19_05214 0.15 +1.1 740,402 + MPMX19_05214 0.15 -1.1 740,402 + MPMX19_05214 0.15 -1.2 740,402 + MPMX19_05214 0.15 +0.1 740,403 - MPMX19_05214 0.15 -0.5 740,403 - MPMX19_05214 0.15 -1.9 740,403 - MPMX19_05214 0.15 +0.7 740,403 - MPMX19_05214 0.15 +1.7 740,403 - MPMX19_05214 0.15 -0.3 740,403 - MPMX19_05214 0.15 +0.7 740,403 - MPMX19_05214 0.15 -1.4 740,403 - MPMX19_05214 0.15 -0.1 740,403 - MPMX19_05214 0.15 +0.1 740,403 - MPMX19_05214 0.15 -0.8 740,403 - MPMX19_05214 0.15 -0.8 740,403 - MPMX19_05214 0.15 -1.0 740,441 + MPMX19_05214 0.20 -1.2 740,441 + MPMX19_05214 0.20 -1.0 740,441 + MPMX19_05214 0.20 +1.6 740,455 - MPMX19_05214 0.22 -0.9 740,455 - MPMX19_05214 0.22 +0.1 740,646 + MPMX19_05214 0.50 -0.6 740,778 + MPMX19_05214 0.70 -1.8 740,778 + MPMX19_05214 0.70 -1.1 740,778 + MPMX19_05214 0.70 -1.6 740,778 + MPMX19_05214 0.70 -1.9 740,778 + MPMX19_05214 0.70 -0.9 740,778 + MPMX19_05214 0.70 -0.0 740,779 - MPMX19_05214 0.70 -0.6 740,779 - MPMX19_05214 0.70 +0.6 740,779 - MPMX19_05214 0.70 -0.6 740,779 - MPMX19_05214 0.70 -1.3 740,779 - MPMX19_05214 0.70 -0.2 740,779 - MPMX19_05214 0.70 -0.4 740,779 - MPMX19_05214 0.70 -1.7 740,779 - MPMX19_05214 0.70 -0.1 740,779 - MPMX19_05214 0.70 +1.9 740,814 + MPMX19_05214 0.75 +0.6 740,815 - MPMX19_05214 0.75 -0.3 741,181 + MPMX19_05215 0.46 +0.1 741,181 + MPMX19_05215 0.46 -0.4 741,181 + MPMX19_05215 0.46 +0.9 741,181 + MPMX19_05215 0.46 +0.3 741,181 + MPMX19_05215 0.46 +0.4 741,182 - MPMX19_05215 0.47 -0.3 741,349 + MPMX19_05215 0.81 +0.2 741,349 + MPMX19_05215 0.81 -0.8 741,349 + MPMX19_05215 0.81 +1.2 741,349 + MPMX19_05215 0.81 -0.4 741,349 + MPMX19_05215 0.81 -1.2 741,350 - MPMX19_05215 0.82 +1.2 741,350 - MPMX19_05215 0.82 +0.6 741,400 + -0.7 741,401 - -1.7 741,401 - +0.1 741,401 - -1.6 741,421 + -0.1 741,451 + +0.1 741,452 - -0.9 741,501 + +1.5 741,501 + +0.6 741,501 + -1.3 741,501 + +0.0 741,502 - -0.1 741,502 - -1.7 741,502 - -0.2 741,502 - -0.4 741,502 - -3.6 741,502 - -0.3 741,502 - -0.0 741,558 + -1.2 741,558 + -1.2 741,559 - -1.1 741,559 - -2.3 741,559 - +0.7 741,559 - +0.2 741,561 + +0.1 741,561 + +1.1 741,561 + +0.3 741,561 + +1.4 741,562 - -0.3 741,582 + -0.9 741,582 + -0.9 741,582 + +0.0 741,582 + +0.6 741,582 + -1.0 741,583 - -0.0 741,583 - -1.6 741,678 + MPMX19_05216 0.12 +1.6 741,678 + MPMX19_05216 0.12 +0.7 741,678 + MPMX19_05216 0.12 +0.2 741,679 - MPMX19_05216 0.12 -0.9 741,679 - MPMX19_05216 0.12 -0.9 741,679 - MPMX19_05216 0.12 +0.5 741,679 - MPMX19_05216 0.12 -0.2 741,679 - MPMX19_05216 0.12 -0.2 741,679 - MPMX19_05216 0.12 -0.1 741,768 + MPMX19_05216 0.17 -1.4 741,769 - MPMX19_05216 0.17 +0.6 741,769 - MPMX19_05216 0.17 -1.1 741,789 + MPMX19_05216 0.19 +1.0 741,789 + MPMX19_05216 0.19 -0.3 741,789 + MPMX19_05216 0.19 +1.1 741,789 + MPMX19_05216 0.19 +0.2 741,789 + MPMX19_05216 0.19 -1.9 741,789 + MPMX19_05216 0.19 -0.2 741,789 + MPMX19_05216 0.19 -0.7 741,789 + MPMX19_05216 0.19 -1.7 741,789 + MPMX19_05216 0.19 -1.6 741,789 + MPMX19_05216 0.19 +0.8 741,789 + MPMX19_05216 0.19 -1.3 741,790 - MPMX19_05216 0.19 -0.8 741,790 - MPMX19_05216 0.19 -0.6 741,790 - MPMX19_05216 0.19 -1.1 741,790 - MPMX19_05216 0.19 -0.2 741,890 + MPMX19_05216 0.25 +0.9 741,934 - MPMX19_05216 0.27 -0.3 741,934 - MPMX19_05216 0.27 -0.4
Or see this region's nucleotide sequence