Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05211

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05210 and MPMX19_05211 are separated by 212 nucleotidesMPMX19_05211 and MPMX19_05212 are separated by 138 nucleotides MPMX19_05210: MPMX19_05210 - Delta(1)-pyrroline-2-carboxylate reductase 1, at 735,868 to 736,800 _05210 MPMX19_05211: MPMX19_05211 - hypothetical protein, at 737,013 to 737,570 _05211 MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018 _05212 Position (kb) 737 738Strain fitness (log2 ratio) -2 -1 0 1 2at 736.115 kb on + strand, within MPMX19_05210at 736.115 kb on + strand, within MPMX19_05210at 736.115 kb on + strand, within MPMX19_05210at 736.116 kb on - strand, within MPMX19_05210at 736.116 kb on - strand, within MPMX19_05210at 736.116 kb on - strand, within MPMX19_05210at 736.185 kb on - strand, within MPMX19_05210at 736.185 kb on - strand, within MPMX19_05210at 736.185 kb on - strand, within MPMX19_05210at 736.237 kb on + strand, within MPMX19_05210at 736.237 kb on + strand, within MPMX19_05210at 736.237 kb on + strand, within MPMX19_05210at 736.238 kb on - strand, within MPMX19_05210at 736.238 kb on - strand, within MPMX19_05210at 736.347 kb on - strand, within MPMX19_05210at 736.373 kb on + strand, within MPMX19_05210at 736.373 kb on + strand, within MPMX19_05210at 736.374 kb on - strand, within MPMX19_05210at 736.374 kb on - strand, within MPMX19_05210at 736.374 kb on - strand, within MPMX19_05210at 736.374 kb on - strand, within MPMX19_05210at 736.374 kb on - strand, within MPMX19_05210at 736.526 kb on + strand, within MPMX19_05210at 736.526 kb on + strand, within MPMX19_05210at 736.526 kb on + strand, within MPMX19_05210at 736.527 kb on - strand, within MPMX19_05210at 736.527 kb on - strand, within MPMX19_05210at 736.527 kb on - strand, within MPMX19_05210at 736.700 kb on + strand, within MPMX19_05210at 736.700 kb on + strand, within MPMX19_05210at 736.701 kb on - strand, within MPMX19_05210at 736.846 kb on + strandat 736.846 kb on + strandat 736.846 kb on + strandat 736.846 kb on + strandat 736.846 kb on + strandat 736.846 kb on + strandat 736.846 kb on + strandat 736.847 kb on - strandat 736.847 kb on - strandat 736.847 kb on - strandat 736.847 kb on - strandat 736.847 kb on - strandat 736.847 kb on - strandat 736.848 kb on + strandat 736.849 kb on - strandat 736.849 kb on - strandat 736.884 kb on + strandat 736.904 kb on + strandat 736.905 kb on - strandat 736.905 kb on - strandat 736.905 kb on - strandat 736.905 kb on - strandat 736.906 kb on + strandat 736.906 kb on + strandat 736.906 kb on + strandat 736.907 kb on - strandat 736.907 kb on - strandat 737.139 kb on + strand, within MPMX19_05211at 737.139 kb on + strand, within MPMX19_05211at 737.139 kb on + strand, within MPMX19_05211at 737.139 kb on + strand, within MPMX19_05211at 737.140 kb on - strand, within MPMX19_05211at 737.140 kb on - strand, within MPMX19_05211at 737.188 kb on + strand, within MPMX19_05211at 737.189 kb on - strand, within MPMX19_05211at 737.189 kb on - strand, within MPMX19_05211at 737.189 kb on - strand, within MPMX19_05211at 737.283 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.403 kb on + strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.404 kb on - strand, within MPMX19_05211at 737.439 kb on + strand, within MPMX19_05211at 737.439 kb on + strand, within MPMX19_05211at 737.439 kb on + strand, within MPMX19_05211at 737.439 kb on + strand, within MPMX19_05211at 737.439 kb on + strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.440 kb on - strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.442 kb on + strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.443 kb on - strand, within MPMX19_05211at 737.478 kb on + strand, within MPMX19_05211at 737.478 kb on + strand, within MPMX19_05211at 737.478 kb on + strand, within MPMX19_05211at 737.478 kb on + strand, within MPMX19_05211at 737.479 kb on - strand, within MPMX19_05211at 737.479 kb on - strand, within MPMX19_05211at 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.571 kb on + strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.572 kb on - strandat 737.581 kb on + strandat 737.581 kb on + strandat 737.581 kb on + strandat 737.582 kb on - strandat 737.582 kb on - strandat 737.582 kb on - strandat 737.636 kb on + strandat 737.636 kb on + strandat 737.636 kb on + strandat 737.732 kb on + strandat 737.802 kb on + strandat 737.802 kb on + strandat 737.803 kb on - strandat 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.943 kb on + strand, within MPMX19_05212at 737.944 kb on - strand, within MPMX19_05212at 737.944 kb on - strand, within MPMX19_05212at 737.944 kb on - strand, within MPMX19_05212at 738.313 kb on - strand, within MPMX19_05212at 738.415 kb on - strand, within MPMX19_05212

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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736,115 + MPMX19_05210 0.26 +0.1
736,115 + MPMX19_05210 0.26 +0.9
736,115 + MPMX19_05210 0.26 +0.3
736,116 - MPMX19_05210 0.27 -0.6
736,116 - MPMX19_05210 0.27 -0.1
736,116 - MPMX19_05210 0.27 +1.1
736,185 - MPMX19_05210 0.34 +0.0
736,185 - MPMX19_05210 0.34 -0.8
736,185 - MPMX19_05210 0.34 +0.3
736,237 + MPMX19_05210 0.40 +0.2
736,237 + MPMX19_05210 0.40 -0.9
736,237 + MPMX19_05210 0.40 -0.7
736,238 - MPMX19_05210 0.40 -1.8
736,238 - MPMX19_05210 0.40 -0.1
736,347 - MPMX19_05210 0.51 -0.9
736,373 + MPMX19_05210 0.54 -0.8
736,373 + MPMX19_05210 0.54 -0.7
736,374 - MPMX19_05210 0.54 +0.9
736,374 - MPMX19_05210 0.54 -0.7
736,374 - MPMX19_05210 0.54 -0.6
736,374 - MPMX19_05210 0.54 -0.1
736,374 - MPMX19_05210 0.54 -2.4
736,526 + MPMX19_05210 0.71 -0.9
736,526 + MPMX19_05210 0.71 -1.0
736,526 + MPMX19_05210 0.71 -1.8
736,527 - MPMX19_05210 0.71 -0.2
736,527 - MPMX19_05210 0.71 +0.6
736,527 - MPMX19_05210 0.71 +0.2
736,700 + MPMX19_05210 0.89 -1.6
736,700 + MPMX19_05210 0.89 -0.0
736,701 - MPMX19_05210 0.89 +0.8
736,846 + +0.6
736,846 + -0.4
736,846 + -1.3
736,846 + -0.4
736,846 + -1.1
736,846 + -1.1
736,846 + -1.1
736,847 - -1.7
736,847 - -0.1
736,847 - -0.6
736,847 - +0.3
736,847 - +1.9
736,847 - -0.6
736,848 + -1.0
736,849 - -0.2
736,849 - +0.4
736,884 + -1.3
736,904 + -1.9
736,905 - -0.3
736,905 - -2.1
736,905 - -1.4
736,905 - -0.8
736,906 + -0.5
736,906 + +0.8
736,906 + -0.9
736,907 - -1.8
736,907 - -0.4
737,139 + MPMX19_05211 0.23 -0.6
737,139 + MPMX19_05211 0.23 -0.7
737,139 + MPMX19_05211 0.23 +0.2
737,139 + MPMX19_05211 0.23 +0.9
737,140 - MPMX19_05211 0.23 -0.6
737,140 - MPMX19_05211 0.23 -1.6
737,188 + MPMX19_05211 0.31 +0.9
737,189 - MPMX19_05211 0.32 -1.3
737,189 - MPMX19_05211 0.32 -0.8
737,189 - MPMX19_05211 0.32 -0.3
737,283 + MPMX19_05211 0.48 -1.1
737,403 + MPMX19_05211 0.70 -0.6
737,403 + MPMX19_05211 0.70 -1.7
737,403 + MPMX19_05211 0.70 -1.7
737,403 + MPMX19_05211 0.70 -1.4
737,403 + MPMX19_05211 0.70 -1.7
737,403 + MPMX19_05211 0.70 +0.3
737,403 + MPMX19_05211 0.70 -0.9
737,403 + MPMX19_05211 0.70 +0.6
737,403 + MPMX19_05211 0.70 -0.2
737,404 - MPMX19_05211 0.70 -1.0
737,404 - MPMX19_05211 0.70 -1.4
737,404 - MPMX19_05211 0.70 -1.4
737,404 - MPMX19_05211 0.70 -0.3
737,404 - MPMX19_05211 0.70 -1.5
737,404 - MPMX19_05211 0.70 +1.4
737,404 - MPMX19_05211 0.70 -0.9
737,404 - MPMX19_05211 0.70 -0.1
737,404 - MPMX19_05211 0.70 -0.4
737,404 - MPMX19_05211 0.70 +0.5
737,404 - MPMX19_05211 0.70 -0.8
737,404 - MPMX19_05211 0.70 +0.1
737,404 - MPMX19_05211 0.70 -0.3
737,404 - MPMX19_05211 0.70 -0.3
737,439 + MPMX19_05211 0.76 +0.1
737,439 + MPMX19_05211 0.76 -1.4
737,439 + MPMX19_05211 0.76 -0.4
737,439 + MPMX19_05211 0.76 +0.2
737,439 + MPMX19_05211 0.76 +0.3
737,440 - MPMX19_05211 0.77 -0.4
737,440 - MPMX19_05211 0.77 -0.4
737,440 - MPMX19_05211 0.77 +0.6
737,440 - MPMX19_05211 0.77 -1.3
737,440 - MPMX19_05211 0.77 -0.9
737,440 - MPMX19_05211 0.77 -0.0
737,440 - MPMX19_05211 0.77 -1.2
737,440 - MPMX19_05211 0.77 +0.1
737,442 + MPMX19_05211 0.77 +0.7
737,442 + MPMX19_05211 0.77 +0.2
737,442 + MPMX19_05211 0.77 -2.0
737,442 + MPMX19_05211 0.77 +0.1
737,442 + MPMX19_05211 0.77 -0.7
737,442 + MPMX19_05211 0.77 -0.7
737,442 + MPMX19_05211 0.77 -0.2
737,443 - MPMX19_05211 0.77 +0.1
737,443 - MPMX19_05211 0.77 -1.3
737,443 - MPMX19_05211 0.77 +0.0
737,443 - MPMX19_05211 0.77 +1.6
737,443 - MPMX19_05211 0.77 +0.1
737,443 - MPMX19_05211 0.77 -0.8
737,443 - MPMX19_05211 0.77 -1.4
737,443 - MPMX19_05211 0.77 -0.6
737,478 + MPMX19_05211 0.83 +0.5
737,478 + MPMX19_05211 0.83 -0.3
737,478 + MPMX19_05211 0.83 -1.3
737,478 + MPMX19_05211 0.83 -0.2
737,479 - MPMX19_05211 0.84 -0.2
737,479 - MPMX19_05211 0.84 +0.2
737,571 + -0.8
737,571 + +0.9
737,571 + -0.2
737,571 + -0.7
737,571 + +1.9
737,571 + +0.2
737,571 + -1.0
737,571 + -1.5
737,572 - -0.3
737,572 - -2.4
737,572 - -1.2
737,572 - -0.9
737,572 - -1.6
737,572 - +1.7
737,572 - +0.3
737,572 - -0.7
737,572 - -1.6
737,572 - -0.3
737,581 + -1.0
737,581 + +0.1
737,581 + +0.5
737,582 - -1.6
737,582 - -1.1
737,582 - +0.9
737,636 + -1.8
737,636 + +0.5
737,636 + +0.3
737,732 + +0.4
737,802 + -0.2
737,802 + -0.4
737,803 - -0.2
737,943 + MPMX19_05212 0.10 -0.3
737,943 + MPMX19_05212 0.10 +0.6
737,943 + MPMX19_05212 0.10 +0.2
737,943 + MPMX19_05212 0.10 +1.1
737,943 + MPMX19_05212 0.10 -1.2
737,943 + MPMX19_05212 0.10 +0.4
737,943 + MPMX19_05212 0.10 +0.0
737,943 + MPMX19_05212 0.10 -0.5
737,944 - MPMX19_05212 0.10 +0.0
737,944 - MPMX19_05212 0.10 -1.1
737,944 - MPMX19_05212 0.10 -0.7
738,313 - MPMX19_05212 0.26 -0.3
738,415 - MPMX19_05212 0.31 -1.6

Or see this region's nucleotide sequence