Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05196

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05194 and MPMX19_05195 overlap by 4 nucleotidesMPMX19_05195 and MPMX19_05196 are separated by 57 nucleotidesMPMX19_05196 and MPMX19_05197 are separated by 51 nucleotides MPMX19_05194: MPMX19_05194 - Taurine import ATP-binding protein TauB, at 697,221 to 698,024 _05194 MPMX19_05195: MPMX19_05195 - Putative aliphatic sulfonates transport permease protein SsuC, at 698,021 to 698,872 _05195 MPMX19_05196: MPMX19_05196 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 698,930 to 699,781 _05196 MPMX19_05197: MPMX19_05197 - Inducible ornithine decarboxylase, at 699,833 to 702,193 _05197 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1at 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.954 kb on - strandat 697.954 kb on - strandat 697.954 kb on - strandat 697.954 kb on - strandat 698.259 kb on - strand, within MPMX19_05195at 698.259 kb on - strand, within MPMX19_05195at 698.259 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.907 kb on + strandat 698.908 kb on - strandat 698.908 kb on - strandat 698.908 kb on - strandat 698.908 kb on - strandat 699.072 kb on + strand, within MPMX19_05196at 699.072 kb on + strand, within MPMX19_05196at 699.072 kb on + strand, within MPMX19_05196at 699.072 kb on + strand, within MPMX19_05196at 699.073 kb on - strand, within MPMX19_05196at 699.073 kb on - strand, within MPMX19_05196at 699.073 kb on - strand, within MPMX19_05196at 699.073 kb on - strand, within MPMX19_05196at 699.073 kb on - strand, within MPMX19_05196at 699.344 kb on + strand, within MPMX19_05196at 699.344 kb on + strand, within MPMX19_05196at 699.407 kb on - strand, within MPMX19_05196at 699.617 kb on + strand, within MPMX19_05196at 699.617 kb on + strand, within MPMX19_05196at 699.618 kb on - strand, within MPMX19_05196at 699.707 kb on + strandat 699.707 kb on + strandat 699.708 kb on - strandat 699.708 kb on - strandat 699.776 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.861 kb on + strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.862 kb on - strandat 699.867 kb on + strandat 699.867 kb on + strandat 699.867 kb on + strandat 699.867 kb on + strandat 699.867 kb on + strandat 699.867 kb on + strandat 699.868 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 699.969 kb on + strandat 699.970 kb on - strandat 699.970 kb on - strandat 700.039 kb on - strandat 700.039 kb on - strandat 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.092 kb on + strand, within MPMX19_05197at 700.093 kb on - strand, within MPMX19_05197at 700.093 kb on - strand, within MPMX19_05197at 700.093 kb on - strand, within MPMX19_05197at 700.209 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.212 kb on + strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.213 kb on - strand, within MPMX19_05197at 700.257 kb on + strand, within MPMX19_05197at 700.449 kb on + strand, within MPMX19_05197at 700.449 kb on + strand, within MPMX19_05197at 700.449 kb on + strand, within MPMX19_05197at 700.450 kb on - strand, within MPMX19_05197at 700.450 kb on - strand, within MPMX19_05197at 700.450 kb on - strand, within MPMX19_05197at 700.450 kb on - strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.488 kb on + strand, within MPMX19_05197at 700.489 kb on - strand, within MPMX19_05197at 700.489 kb on - strand, within MPMX19_05197at 700.555 kb on - strand, within MPMX19_05197

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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697,953 + -2.2
697,953 + -1.4
697,953 + -0.4
697,953 + -2.5
697,953 + -1.1
697,953 + +0.2
697,954 - +0.5
697,954 - +0.3
697,954 - +0.6
697,954 - -0.8
698,259 - MPMX19_05195 0.28 +0.3
698,259 - MPMX19_05195 0.28 -0.6
698,259 - MPMX19_05195 0.28 +1.1
698,436 - MPMX19_05195 0.49 -0.6
698,436 - MPMX19_05195 0.49 -2.4
698,436 - MPMX19_05195 0.49 -0.7
698,436 - MPMX19_05195 0.49 -0.3
698,436 - MPMX19_05195 0.49 +0.2
698,436 - MPMX19_05195 0.49 -1.1
698,436 - MPMX19_05195 0.49 -1.0
698,436 - MPMX19_05195 0.49 -0.4
698,907 + -0.2
698,908 - -0.6
698,908 - -0.4
698,908 - -1.5
698,908 - -0.9
699,072 + MPMX19_05196 0.17 +0.2
699,072 + MPMX19_05196 0.17 -0.1
699,072 + MPMX19_05196 0.17 -1.1
699,072 + MPMX19_05196 0.17 -0.0
699,073 - MPMX19_05196 0.17 -0.1
699,073 - MPMX19_05196 0.17 -1.4
699,073 - MPMX19_05196 0.17 -1.1
699,073 - MPMX19_05196 0.17 -0.2
699,073 - MPMX19_05196 0.17 +0.1
699,344 + MPMX19_05196 0.49 -0.2
699,344 + MPMX19_05196 0.49 -0.3
699,407 - MPMX19_05196 0.56 -1.0
699,617 + MPMX19_05196 0.81 +0.3
699,617 + MPMX19_05196 0.81 -0.4
699,618 - MPMX19_05196 0.81 -1.1
699,707 + -0.8
699,707 + +0.3
699,708 - -1.0
699,708 - -1.1
699,776 + +0.7
699,861 + -0.4
699,861 + -0.4
699,861 + -0.1
699,861 + +0.5
699,861 + +0.1
699,861 + +1.3
699,861 + -1.5
699,861 + -0.9
699,861 + +0.2
699,861 + +0.1
699,861 + -2.9
699,861 + +0.0
699,861 + -1.4
699,861 + -0.6
699,861 + -0.3
699,861 + -1.0
699,861 + -0.1
699,861 + -1.1
699,861 + +0.3
699,861 + -0.6
699,861 + -0.3
699,861 + -0.2
699,861 + -0.1
699,861 + -0.9
699,861 + -2.0
699,861 + +0.7
699,861 + -0.7
699,862 - -0.7
699,862 - -0.3
699,862 - -1.4
699,862 - -0.3
699,862 - +0.2
699,862 - +0.8
699,862 - -0.8
699,862 - -1.0
699,862 - -0.3
699,862 - -0.4
699,862 - +0.5
699,862 - -1.3
699,862 - -0.6
699,862 - -0.8
699,862 - -1.2
699,862 - -1.0
699,867 + -0.4
699,867 + +1.3
699,867 + +0.7
699,867 + +0.6
699,867 + -0.7
699,867 + -0.6
699,868 - -0.2
699,868 - +0.7
699,868 - -0.9
699,868 - -0.8
699,868 - +1.7
699,868 - -0.7
699,969 + -0.5
699,970 - -0.1
699,970 - -0.1
700,039 - -0.3
700,039 - -0.3
700,092 + MPMX19_05197 0.11 +1.2
700,092 + MPMX19_05197 0.11 -0.6
700,092 + MPMX19_05197 0.11 +0.2
700,092 + MPMX19_05197 0.11 -0.1
700,092 + MPMX19_05197 0.11 -0.3
700,092 + MPMX19_05197 0.11 -0.4
700,092 + MPMX19_05197 0.11 +0.9
700,092 + MPMX19_05197 0.11 -1.6
700,093 - MPMX19_05197 0.11 -0.8
700,093 - MPMX19_05197 0.11 -1.7
700,093 - MPMX19_05197 0.11 -0.2
700,209 + MPMX19_05197 0.16 +0.6
700,212 + MPMX19_05197 0.16 -0.3
700,212 + MPMX19_05197 0.16 -1.1
700,212 + MPMX19_05197 0.16 -2.4
700,212 + MPMX19_05197 0.16 +0.1
700,212 + MPMX19_05197 0.16 -0.9
700,212 + MPMX19_05197 0.16 -0.3
700,212 + MPMX19_05197 0.16 +0.4
700,212 + MPMX19_05197 0.16 -0.9
700,213 - MPMX19_05197 0.16 +0.1
700,213 - MPMX19_05197 0.16 -0.4
700,213 - MPMX19_05197 0.16 -0.3
700,213 - MPMX19_05197 0.16 -0.4
700,213 - MPMX19_05197 0.16 -0.6
700,213 - MPMX19_05197 0.16 +1.1
700,257 + MPMX19_05197 0.18 -0.5
700,449 + MPMX19_05197 0.26 -0.6
700,449 + MPMX19_05197 0.26 -1.1
700,449 + MPMX19_05197 0.26 -0.6
700,450 - MPMX19_05197 0.26 -1.4
700,450 - MPMX19_05197 0.26 +0.3
700,450 - MPMX19_05197 0.26 +0.0
700,450 - MPMX19_05197 0.26 -1.1
700,488 + MPMX19_05197 0.28 +0.1
700,488 + MPMX19_05197 0.28 -1.1
700,488 + MPMX19_05197 0.28 +0.5
700,488 + MPMX19_05197 0.28 -0.0
700,488 + MPMX19_05197 0.28 +1.3
700,488 + MPMX19_05197 0.28 -1.1
700,489 - MPMX19_05197 0.28 +0.0
700,489 - MPMX19_05197 0.28 +1.0
700,555 - MPMX19_05197 0.31 -1.2

Or see this region's nucleotide sequence