Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05190

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05189 and MPMX19_05190 are separated by 49 nucleotidesMPMX19_05190 and MPMX19_05191 are separated by 27 nucleotides MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460 _05189 MPMX19_05190: MPMX19_05190 - putative malonic semialdehyde reductase RutE, at 693,510 to 694,142 _05190 MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504 _05191 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 692.557 kb on - strand, within MPMX19_05189at 692.557 kb on - strand, within MPMX19_05189at 692.905 kb on - strand, within MPMX19_05189at 692.970 kb on + strand, within MPMX19_05189at 692.970 kb on + strand, within MPMX19_05189at 692.971 kb on - strand, within MPMX19_05189at 693.709 kb on + strand, within MPMX19_05190at 693.791 kb on - strand, within MPMX19_05190at 693.791 kb on - strand, within MPMX19_05190at 693.791 kb on - strand, within MPMX19_05190at 693.791 kb on - strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.835 kb on + strand, within MPMX19_05190at 693.988 kb on + strand, within MPMX19_05190at 693.988 kb on + strand, within MPMX19_05190at 693.989 kb on - strand, within MPMX19_05190at 694.127 kb on + strandat 694.128 kb on - strandat 694.128 kb on - strandat 694.686 kb on - strand, within MPMX19_05191at 694.686 kb on - strand, within MPMX19_05191at 694.686 kb on - strand, within MPMX19_05191at 694.762 kb on + strand, within MPMX19_05191at 694.762 kb on + strand, within MPMX19_05191at 694.765 kb on + strand, within MPMX19_05191at 694.765 kb on + strand, within MPMX19_05191at 694.765 kb on + strand, within MPMX19_05191at 694.771 kb on + strand, within MPMX19_05191at 694.771 kb on + strand, within MPMX19_05191at 694.771 kb on + strand, within MPMX19_05191at 694.772 kb on + strand, within MPMX19_05191at 695.084 kb on - strand, within MPMX19_05191

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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692,557 - MPMX19_05189 0.14 -2.6
692,557 - MPMX19_05189 0.14 +0.2
692,905 - MPMX19_05189 0.47 -0.2
692,970 + MPMX19_05189 0.53 -0.8
692,970 + MPMX19_05189 0.53 -0.3
692,971 - MPMX19_05189 0.53 -0.7
693,709 + MPMX19_05190 0.31 -0.4
693,791 - MPMX19_05190 0.44 -0.5
693,791 - MPMX19_05190 0.44 +0.6
693,791 - MPMX19_05190 0.44 -0.4
693,791 - MPMX19_05190 0.44 -0.3
693,835 + MPMX19_05190 0.51 -0.3
693,835 + MPMX19_05190 0.51 +0.8
693,835 + MPMX19_05190 0.51 +1.9
693,835 + MPMX19_05190 0.51 +0.2
693,835 + MPMX19_05190 0.51 +0.3
693,835 + MPMX19_05190 0.51 +0.7
693,835 + MPMX19_05190 0.51 +1.2
693,835 + MPMX19_05190 0.51 -0.1
693,988 + MPMX19_05190 0.76 +0.2
693,988 + MPMX19_05190 0.76 -0.3
693,989 - MPMX19_05190 0.76 +0.5
694,127 + -0.2
694,128 - -1.3
694,128 - -1.8
694,686 - MPMX19_05191 0.39 -1.4
694,686 - MPMX19_05191 0.39 +0.6
694,686 - MPMX19_05191 0.39 -0.8
694,762 + MPMX19_05191 0.44 +1.3
694,762 + MPMX19_05191 0.44 -1.8
694,765 + MPMX19_05191 0.45 +0.2
694,765 + MPMX19_05191 0.45 -1.1
694,765 + MPMX19_05191 0.45 -0.4
694,771 + MPMX19_05191 0.45 -1.1
694,771 + MPMX19_05191 0.45 -1.2
694,771 + MPMX19_05191 0.45 -0.6
694,772 + MPMX19_05191 0.45 -0.6
695,084 - MPMX19_05191 0.68 -0.1

Or see this region's nucleotide sequence