Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05186

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05185 and MPMX19_05186 are separated by 20 nucleotidesMPMX19_05186 and MPMX19_05187 are separated by 15 nucleotidesMPMX19_05187 and MPMX19_05188 are separated by 12 nucleotides MPMX19_05185: MPMX19_05185 - hypothetical protein, at 688,252 to 689,301 _05185 MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953 _05186 MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607 _05187 MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414 _05188 Position (kb) 689 690 691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 688.380 kb on - strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.843 kb on - strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.902 kb on - strand, within MPMX19_05185at 688.960 kb on - strand, within MPMX19_05185at 688.974 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.160 kb on - strand, within MPMX19_05185at 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.443 kb on + strandat 689.443 kb on + strandat 689.587 kb on + strand, within MPMX19_05186at 689.588 kb on - strand, within MPMX19_05186at 689.588 kb on - strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.071 kb on + strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.467 kb on - strand, within MPMX19_05186at 690.677 kb on - strand, within MPMX19_05186at 690.716 kb on - strand, within MPMX19_05186at 690.716 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.772 kb on + strand, within MPMX19_05186at 690.772 kb on + strand, within MPMX19_05186at 690.773 kb on - strand, within MPMX19_05186at 690.773 kb on - strand, within MPMX19_05186at 690.835 kb on + strandat 690.835 kb on + strandat 690.836 kb on - strandat 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.259 kb on - strand, within MPMX19_05187at 691.376 kb on - strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
688,380 - MPMX19_05185 0.12 +1.9
688,451 + MPMX19_05185 0.19 +0.2
688,451 + MPMX19_05185 0.19 -1.3
688,451 + MPMX19_05185 0.19 -1.9
688,451 + MPMX19_05185 0.19 -0.3
688,452 - MPMX19_05185 0.19 +1.4
688,452 - MPMX19_05185 0.19 -0.8
688,452 - MPMX19_05185 0.19 -0.0
688,452 - MPMX19_05185 0.19 -1.3
688,452 - MPMX19_05185 0.19 +0.3
688,452 - MPMX19_05185 0.19 +0.6
688,452 - MPMX19_05185 0.19 -1.1
688,605 - MPMX19_05185 0.34 -1.4
688,605 - MPMX19_05185 0.34 -1.1
688,814 + MPMX19_05185 0.54 -2.0
688,814 + MPMX19_05185 0.54 -2.2
688,814 + MPMX19_05185 0.54 +0.2
688,815 - MPMX19_05185 0.54 -1.1
688,815 - MPMX19_05185 0.54 -0.3
688,843 - MPMX19_05185 0.56 -0.7
688,901 + MPMX19_05185 0.62 +0.9
688,901 + MPMX19_05185 0.62 +0.4
688,901 + MPMX19_05185 0.62 -0.1
688,901 + MPMX19_05185 0.62 -0.6
688,902 - MPMX19_05185 0.62 +2.9
688,960 - MPMX19_05185 0.67 +0.3
688,974 + MPMX19_05185 0.69 +0.3
689,075 + MPMX19_05185 0.78 -1.0
689,075 + MPMX19_05185 0.78 -1.9
689,075 + MPMX19_05185 0.78 -1.7
689,147 + MPMX19_05185 0.85 -0.0
689,147 + MPMX19_05185 0.85 -0.7
689,147 + MPMX19_05185 0.85 +1.0
689,147 + MPMX19_05185 0.85 -1.2
689,147 + MPMX19_05185 0.85 -0.2
689,147 + MPMX19_05185 0.85 +0.0
689,147 + MPMX19_05185 0.85 -0.6
689,147 + MPMX19_05185 0.85 +0.6
689,148 - MPMX19_05185 0.85 -1.1
689,148 - MPMX19_05185 0.85 +0.2
689,148 - MPMX19_05185 0.85 -0.0
689,148 - MPMX19_05185 0.85 +0.9
689,148 - MPMX19_05185 0.85 -0.1
689,148 - MPMX19_05185 0.85 +0.5
689,148 - MPMX19_05185 0.85 -0.6
689,148 - MPMX19_05185 0.85 +0.2
689,148 - MPMX19_05185 0.85 +1.2
689,148 - MPMX19_05185 0.85 -0.4
689,159 + MPMX19_05185 0.86 -0.3
689,159 + MPMX19_05185 0.86 +0.3
689,160 - MPMX19_05185 0.86 +0.9
689,393 - -1.6
689,393 - -0.1
689,393 - -0.7
689,393 - +0.3
689,393 - -0.4
689,393 - -2.2
689,443 + +0.0
689,443 + +0.7
689,587 + MPMX19_05186 0.16 +0.6
689,588 - MPMX19_05186 0.16 -0.4
689,588 - MPMX19_05186 0.16 +1.1
689,683 + MPMX19_05186 0.22 +0.5
689,683 + MPMX19_05186 0.22 +0.0
689,683 + MPMX19_05186 0.22 +1.2
689,683 + MPMX19_05186 0.22 -0.6
689,683 + MPMX19_05186 0.22 +0.6
689,683 + MPMX19_05186 0.22 -0.1
689,990 - MPMX19_05186 0.41 -1.6
689,990 - MPMX19_05186 0.41 -0.1
689,990 - MPMX19_05186 0.41 +2.5
689,990 - MPMX19_05186 0.41 +0.6
690,058 + MPMX19_05186 0.45 +0.5
690,058 + MPMX19_05186 0.45 +1.1
690,058 + MPMX19_05186 0.45 -1.7
690,058 + MPMX19_05186 0.45 +0.2
690,071 + MPMX19_05186 0.46 -0.6
690,072 - MPMX19_05186 0.46 +0.5
690,072 - MPMX19_05186 0.46 +1.0
690,466 + MPMX19_05186 0.70 -1.4
690,466 + MPMX19_05186 0.70 +0.3
690,466 + MPMX19_05186 0.70 -0.1
690,467 - MPMX19_05186 0.70 +0.6
690,677 - MPMX19_05186 0.83 -0.1
690,716 - MPMX19_05186 0.85 +0.2
690,716 - MPMX19_05186 0.85 +1.9
690,734 - MPMX19_05186 0.87 -1.1
690,734 - MPMX19_05186 0.87 +1.2
690,734 - MPMX19_05186 0.87 +1.7
690,734 - MPMX19_05186 0.87 -0.5
690,734 - MPMX19_05186 0.87 +1.6
690,734 - MPMX19_05186 0.87 -0.1
690,772 + MPMX19_05186 0.89 -1.0
690,772 + MPMX19_05186 0.89 +2.5
690,773 - MPMX19_05186 0.89 -0.4
690,773 - MPMX19_05186 0.89 -0.7
690,835 + -0.9
690,835 + -0.1
690,836 - -0.5
691,108 + MPMX19_05187 0.22 -1.3
691,108 + MPMX19_05187 0.22 +0.3
691,108 + MPMX19_05187 0.22 +0.3
691,108 + MPMX19_05187 0.22 -0.1
691,108 + MPMX19_05187 0.22 +0.2
691,108 + MPMX19_05187 0.22 -1.7
691,108 + MPMX19_05187 0.22 -0.1
691,108 + MPMX19_05187 0.22 -0.2
691,109 - MPMX19_05187 0.22 -0.3
691,109 - MPMX19_05187 0.22 -1.3
691,109 - MPMX19_05187 0.22 +0.7
691,109 - MPMX19_05187 0.22 +0.7
691,109 - MPMX19_05187 0.22 -0.7
691,109 - MPMX19_05187 0.22 +0.1
691,109 - MPMX19_05187 0.22 +0.7
691,109 - MPMX19_05187 0.22 -0.7
691,109 - MPMX19_05187 0.22 -0.9
691,258 + MPMX19_05187 0.45 -1.2
691,258 + MPMX19_05187 0.45 -0.6
691,258 + MPMX19_05187 0.45 +0.3
691,259 - MPMX19_05187 0.45 -0.3
691,376 - MPMX19_05187 0.64 +0.3
691,429 + MPMX19_05187 0.72 +0.4
691,429 + MPMX19_05187 0.72 +0.4
691,429 + MPMX19_05187 0.72 -0.3
691,429 + MPMX19_05187 0.72 -1.4
691,429 + MPMX19_05187 0.72 +0.9
691,429 + MPMX19_05187 0.72 +0.9
691,429 + MPMX19_05187 0.72 -0.5
691,429 + MPMX19_05187 0.72 -2.4

Or see this region's nucleotide sequence