Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05179 and MPMX19_05180 are separated by 26 nucleotides MPMX19_05180 and MPMX19_05181 are separated by 6 nucleotides MPMX19_05181 and MPMX19_05182 are separated by 130 nucleotides
MPMX19_05179: MPMX19_05179 - Putative aliphatic sulfonates-binding protein, at 682,516 to 683,529
_05179
MPMX19_05180: MPMX19_05180 - Vitamin B12 import ATP-binding protein BtuD, at 683,556 to 684,461
_05180
MPMX19_05181: MPMX19_05181 - Putative aliphatic sulfonates transport permease protein SsuC, at 684,468 to 685,295
_05181
MPMX19_05182: MPMX19_05182 - HTH-type transcriptional regulator HdfR, at 685,426 to 686,331
_05182
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1 at 683.517 kb on + strand at 684.479 kb on + strand at 684.479 kb on + strand at 684.829 kb on + strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 686.112 kb on - strand, within MPMX19_05182 at 686.112 kb on - strand, within MPMX19_05182
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 683,517 + +0.3 684,479 + -0.2 684,479 + -0.7 684,829 + MPMX19_05181 0.44 +0.6 684,830 - MPMX19_05181 0.44 +0.6 684,830 - MPMX19_05181 0.44 +0.3 684,830 - MPMX19_05181 0.44 +0.1 684,830 - MPMX19_05181 0.44 -0.9 686,112 - MPMX19_05182 0.76 -0.2 686,112 - MPMX19_05182 0.76 -0.5
Or see this region's nucleotide sequence