Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05175 and MPMX19_05176 are separated by 38 nucleotides MPMX19_05176 and MPMX19_05177 are separated by 27 nucleotides MPMX19_05177 and MPMX19_05178 are separated by 7 nucleotides
MPMX19_05175: MPMX19_05175 - hypothetical protein, at 678,508 to 679,524
_05175
MPMX19_05176: MPMX19_05176 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 679,563 to 680,348
_05176
MPMX19_05177: MPMX19_05177 - Glyoxylate/hydroxypyruvate reductase A, at 680,376 to 681,335
_05177
MPMX19_05178: MPMX19_05178 - Alkanesulfonate monooxygenase, at 681,343 to 682,467
_05178
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.622 kb on - strand at 679.906 kb on + strand, within MPMX19_05176 at 679.906 kb on + strand, within MPMX19_05176 at 679.906 kb on + strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.381 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.528 kb on - strand, within MPMX19_05177 at 680.528 kb on - strand, within MPMX19_05177 at 680.528 kb on - strand, within MPMX19_05177 at 680.528 kb on - strand, within MPMX19_05177 at 681.010 kb on + strand, within MPMX19_05177 at 681.010 kb on + strand, within MPMX19_05177 at 681.010 kb on + strand, within MPMX19_05177 at 681.011 kb on - strand, within MPMX19_05177 at 681.085 kb on + strand, within MPMX19_05177 at 681.085 kb on + strand, within MPMX19_05177 at 681.085 kb on + strand, within MPMX19_05177 at 681.131 kb on + strand, within MPMX19_05177 at 681.344 kb on + strand at 681.345 kb on - strand at 681.698 kb on + strand, within MPMX19_05178 at 681.698 kb on + strand, within MPMX19_05178 at 681.698 kb on + strand, within MPMX19_05178 at 681.699 kb on - strand, within MPMX19_05178 at 681.699 kb on - strand, within MPMX19_05178 at 681.699 kb on - strand, within MPMX19_05178 at 681.860 kb on + strand, within MPMX19_05178 at 681.860 kb on + strand, within MPMX19_05178 at 681.860 kb on + strand, within MPMX19_05178 at 681.861 kb on - strand, within MPMX19_05178 at 681.861 kb on - strand, within MPMX19_05178 at 681.861 kb on - strand, within MPMX19_05178 at 681.942 kb on - strand, within MPMX19_05178 at 681.942 kb on - strand, within MPMX19_05178 at 681.942 kb on - strand, within MPMX19_05178 at 681.942 kb on - strand, within MPMX19_05178 at 681.942 kb on - strand, within MPMX19_05178 at 682.058 kb on + strand, within MPMX19_05178 at 682.059 kb on - strand, within MPMX19_05178
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 679,622 - +0.3 679,906 + MPMX19_05176 0.44 +0.6 679,906 + MPMX19_05176 0.44 +1.9 679,906 + MPMX19_05176 0.44 -0.4 679,907 - MPMX19_05176 0.44 -1.0 679,907 - MPMX19_05176 0.44 -1.3 679,907 - MPMX19_05176 0.44 +0.9 679,907 - MPMX19_05176 0.44 -0.1 680,291 - -0.2 680,291 - -0.6 680,291 - -0.5 680,291 - -0.8 680,291 - -0.6 680,381 - -1.1 680,429 - -0.8 680,429 - +0.2 680,429 - -0.7 680,429 - +0.5 680,429 - -0.5 680,429 - -0.3 680,429 - +0.3 680,429 - -0.9 680,429 - +0.1 680,429 - -0.4 680,528 - MPMX19_05177 0.16 -0.7 680,528 - MPMX19_05177 0.16 +1.2 680,528 - MPMX19_05177 0.16 -1.3 680,528 - MPMX19_05177 0.16 -0.4 681,010 + MPMX19_05177 0.66 +0.1 681,010 + MPMX19_05177 0.66 +0.7 681,010 + MPMX19_05177 0.66 -0.7 681,011 - MPMX19_05177 0.66 +1.2 681,085 + MPMX19_05177 0.74 -0.3 681,085 + MPMX19_05177 0.74 -0.4 681,085 + MPMX19_05177 0.74 +0.7 681,131 + MPMX19_05177 0.79 +0.3 681,344 + +0.0 681,345 - +0.7 681,698 + MPMX19_05178 0.32 -1.2 681,698 + MPMX19_05178 0.32 +0.3 681,698 + MPMX19_05178 0.32 -0.4 681,699 - MPMX19_05178 0.32 +0.2 681,699 - MPMX19_05178 0.32 +0.9 681,699 - MPMX19_05178 0.32 +0.6 681,860 + MPMX19_05178 0.46 +0.2 681,860 + MPMX19_05178 0.46 +0.3 681,860 + MPMX19_05178 0.46 -0.1 681,861 - MPMX19_05178 0.46 +1.7 681,861 - MPMX19_05178 0.46 -0.0 681,861 - MPMX19_05178 0.46 -2.0 681,942 - MPMX19_05178 0.53 +0.4 681,942 - MPMX19_05178 0.53 -0.8 681,942 - MPMX19_05178 0.53 +0.2 681,942 - MPMX19_05178 0.53 -0.8 681,942 - MPMX19_05178 0.53 +0.3 682,058 + MPMX19_05178 0.64 -0.6 682,059 - MPMX19_05178 0.64 +0.7
Or see this region's nucleotide sequence