Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05081 and MPMX19_05082 are separated by 66 nucleotides MPMX19_05082 and MPMX19_05083 are separated by 85 nucleotides MPMX19_05083 and MPMX19_05084 overlap by 1 nucleotides MPMX19_05084 and MPMX19_05085 are separated by 22 nucleotides MPMX19_05085 and MPMX19_05086 are separated by 225 nucleotides
MPMX19_05081: MPMX19_05081 - Sensor histidine kinase RcsC, at 570,409 to 572,814
_05081
MPMX19_05082: MPMX19_05082 - hypothetical protein, at 572,881 to 573,255
_05082
MPMX19_05083: MPMX19_05083 - hypothetical protein, at 573,341 to 573,610
_05083
MPMX19_05084: MPMX19_05084 - hypothetical protein, at 573,610 to 573,885
_05084
MPMX19_05085: MPMX19_05085 - hypothetical protein, at 573,908 to 574,333
_05085
MPMX19_05086: MPMX19_05086 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 574,559 to 575,728
_05086
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.728 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.861 kb on - strand at 572.861 kb on - strand at 572.904 kb on + strand at 572.904 kb on + strand at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.286 kb on + strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.365 kb on + strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.584 kb on + strand at 573.584 kb on + strand at 573.658 kb on + strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.721 kb on - strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.890 kb on + strand at 573.891 kb on - strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 574.020 kb on + strand, within MPMX19_05085 at 574.020 kb on + strand, within MPMX19_05085 at 574.021 kb on - strand, within MPMX19_05085 at 574.047 kb on + strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.059 kb on + strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.072 kb on - strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.089 kb on + strand, within MPMX19_05085 at 574.090 kb on - strand, within MPMX19_05085 at 574.362 kb on - strand at 574.456 kb on + strand at 574.456 kb on + strand at 574.467 kb on + strand at 574.468 kb on - strand at 574.468 kb on - strand at 574.502 kb on - strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.661 kb on + strand at 574.662 kb on - strand at 574.662 kb on - strand at 574.662 kb on - strand at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.763 kb on + strand, within MPMX19_05086 at 574.764 kb on - strand, within MPMX19_05086 at 574.764 kb on - strand, within MPMX19_05086 at 574.764 kb on - strand, within MPMX19_05086 at 574.764 kb on - strand, within MPMX19_05086 at 574.764 kb on - strand, within MPMX19_05086 at 574.765 kb on + strand, within MPMX19_05086 at 574.765 kb on + strand, within MPMX19_05086 at 574.766 kb on - strand, within MPMX19_05086 at 574.766 kb on - strand, within MPMX19_05086 at 574.766 kb on - strand, within MPMX19_05086
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 572,728 + -2.4 572,860 + -0.7 572,860 + +0.6 572,860 + -0.4 572,861 - -0.9 572,861 - -1.1 572,904 + -0.9 572,904 + -1.3 573,154 + MPMX19_05082 0.73 -1.3 573,154 + MPMX19_05082 0.73 +0.2 573,154 + MPMX19_05082 0.73 +0.5 573,155 - MPMX19_05082 0.73 -1.4 573,155 - MPMX19_05082 0.73 -0.2 573,155 - MPMX19_05082 0.73 -2.7 573,155 - MPMX19_05082 0.73 +0.3 573,286 + -0.9 573,287 - +1.3 573,287 - -0.1 573,287 - -2.3 573,287 - -0.8 573,365 + -1.5 573,366 - -0.9 573,366 - +0.6 573,366 - -2.0 573,419 + MPMX19_05083 0.29 -0.3 573,419 + MPMX19_05083 0.29 -1.0 573,419 + MPMX19_05083 0.29 -0.9 573,419 + MPMX19_05083 0.29 +0.3 573,419 + MPMX19_05083 0.29 +0.7 573,419 + MPMX19_05083 0.29 -0.3 573,419 + MPMX19_05083 0.29 +0.6 573,419 + MPMX19_05083 0.29 -0.8 573,419 + MPMX19_05083 0.29 -0.9 573,419 + MPMX19_05083 0.29 -1.3 573,420 - MPMX19_05083 0.29 +0.4 573,420 - MPMX19_05083 0.29 +0.6 573,420 - MPMX19_05083 0.29 +0.6 573,420 - MPMX19_05083 0.29 -0.2 573,420 - MPMX19_05083 0.29 -1.5 573,420 - MPMX19_05083 0.29 -1.3 573,420 - MPMX19_05083 0.29 -0.0 573,584 + +0.1 573,584 + -0.4 573,658 + MPMX19_05084 0.17 -0.3 573,659 - MPMX19_05084 0.18 -0.9 573,659 - MPMX19_05084 0.18 -2.0 573,659 - MPMX19_05084 0.18 +0.3 573,720 + MPMX19_05084 0.40 -2.0 573,720 + MPMX19_05084 0.40 -1.3 573,721 - MPMX19_05084 0.40 +0.9 573,808 + MPMX19_05084 0.72 +0.5 573,808 + MPMX19_05084 0.72 +1.2 573,808 + MPMX19_05084 0.72 -1.1 573,808 + MPMX19_05084 0.72 -0.2 573,808 + MPMX19_05084 0.72 -1.3 573,808 + MPMX19_05084 0.72 -1.3 573,808 + MPMX19_05084 0.72 -0.1 573,808 + MPMX19_05084 0.72 -1.1 573,808 + MPMX19_05084 0.72 -1.2 573,808 + MPMX19_05084 0.72 -1.5 573,809 - MPMX19_05084 0.72 -0.4 573,809 - MPMX19_05084 0.72 -0.5 573,809 - MPMX19_05084 0.72 -1.3 573,809 - MPMX19_05084 0.72 -0.4 573,809 - MPMX19_05084 0.72 -2.2 573,809 - MPMX19_05084 0.72 +1.0 573,809 - MPMX19_05084 0.72 -0.7 573,809 - MPMX19_05084 0.72 -0.7 573,809 - MPMX19_05084 0.72 -1.5 573,809 - MPMX19_05084 0.72 -1.1 573,809 - MPMX19_05084 0.72 -0.1 573,809 - MPMX19_05084 0.72 -0.6 573,890 + +1.2 573,891 - +0.2 573,909 + -1.4 573,909 + +0.3 573,909 + -2.1 573,909 + -0.2 573,909 + -0.7 573,909 + +0.2 573,909 + +1.9 573,909 + -0.3 573,910 - +0.6 573,910 - +0.8 573,910 - +0.0 573,910 - -0.5 573,910 - -1.0 574,020 + MPMX19_05085 0.26 -0.9 574,020 + MPMX19_05085 0.26 -0.9 574,021 - MPMX19_05085 0.27 -1.0 574,047 + MPMX19_05085 0.33 -1.1 574,048 - MPMX19_05085 0.33 -0.4 574,048 - MPMX19_05085 0.33 -0.1 574,059 + MPMX19_05085 0.35 -0.7 574,060 - MPMX19_05085 0.36 +0.1 574,060 - MPMX19_05085 0.36 -0.9 574,060 - MPMX19_05085 0.36 -0.1 574,072 - MPMX19_05085 0.38 -1.9 574,074 + MPMX19_05085 0.39 +0.3 574,074 + MPMX19_05085 0.39 +1.2 574,074 + MPMX19_05085 0.39 -1.0 574,074 + MPMX19_05085 0.39 -0.2 574,074 + MPMX19_05085 0.39 -0.4 574,075 - MPMX19_05085 0.39 -0.7 574,075 - MPMX19_05085 0.39 -0.9 574,089 + MPMX19_05085 0.42 -1.2 574,090 - MPMX19_05085 0.43 +0.3 574,362 - +0.1 574,456 + +0.3 574,456 + +1.2 574,467 + -2.3 574,468 - +0.1 574,468 - +0.0 574,502 - -0.3 574,661 + -1.4 574,661 + +0.3 574,661 + -1.1 574,661 + -0.7 574,661 + +0.7 574,661 + +0.1 574,661 + -1.4 574,662 - +0.9 574,662 - -0.9 574,662 - -1.0 574,763 + MPMX19_05086 0.17 +0.7 574,763 + MPMX19_05086 0.17 +0.3 574,763 + MPMX19_05086 0.17 -1.4 574,763 + MPMX19_05086 0.17 +1.5 574,763 + MPMX19_05086 0.17 +0.3 574,763 + MPMX19_05086 0.17 -0.4 574,763 + MPMX19_05086 0.17 -2.3 574,763 + MPMX19_05086 0.17 -2.2 574,763 + MPMX19_05086 0.17 -0.7 574,763 + MPMX19_05086 0.17 -1.1 574,763 + MPMX19_05086 0.17 -1.7 574,764 - MPMX19_05086 0.18 -0.3 574,764 - MPMX19_05086 0.18 +0.2 574,764 - MPMX19_05086 0.18 -1.1 574,764 - MPMX19_05086 0.18 +0.2 574,764 - MPMX19_05086 0.18 -2.1 574,765 + MPMX19_05086 0.18 -1.7 574,765 + MPMX19_05086 0.18 +0.2 574,766 - MPMX19_05086 0.18 -1.3 574,766 - MPMX19_05086 0.18 -0.4 574,766 - MPMX19_05086 0.18 -0.8
Or see this region's nucleotide sequence