Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05061

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05059 and MPMX19_05060 are separated by 110 nucleotidesMPMX19_05060 and MPMX19_05061 are separated by 58 nucleotidesMPMX19_05061 and MPMX19_05062 are separated by 336 nucleotidesMPMX19_05062 and MPMX19_05063 are separated by 145 nucleotides MPMX19_05059: MPMX19_05059 - hypothetical protein, at 543,587 to 544,339 _05059 MPMX19_05060: MPMX19_05060 - hypothetical protein, at 544,450 to 544,827 _05060 MPMX19_05061: MPMX19_05061 - hypothetical protein, at 544,886 to 545,275 _05061 MPMX19_05062: MPMX19_05062 - Sulfur carrier protein TusA, at 545,612 to 545,839 _05062 MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974 _05063 Position (kb) 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 543.886 kb on - strand, within MPMX19_05059at 543.886 kb on - strand, within MPMX19_05059at 543.969 kb on + strand, within MPMX19_05059at 543.969 kb on + strand, within MPMX19_05059at 543.970 kb on - strand, within MPMX19_05059at 544.002 kb on + strand, within MPMX19_05059at 544.002 kb on + strand, within MPMX19_05059at 544.002 kb on + strand, within MPMX19_05059at 544.002 kb on + strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.003 kb on - strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.038 kb on + strand, within MPMX19_05059at 544.039 kb on - strand, within MPMX19_05059at 544.039 kb on - strand, within MPMX19_05059at 544.050 kb on + strand, within MPMX19_05059at 544.050 kb on + strand, within MPMX19_05059at 544.050 kb on + strand, within MPMX19_05059at 544.051 kb on - strand, within MPMX19_05059at 544.132 kb on - strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.146 kb on + strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.147 kb on - strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.152 kb on + strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.153 kb on - strand, within MPMX19_05059at 544.185 kb on + strand, within MPMX19_05059at 544.185 kb on + strand, within MPMX19_05059at 544.185 kb on + strand, within MPMX19_05059at 544.185 kb on + strand, within MPMX19_05059at 544.185 kb on + strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.186 kb on - strand, within MPMX19_05059at 544.373 kb on + strandat 544.373 kb on + strandat 544.374 kb on - strandat 544.374 kb on - strandat 544.389 kb on + strandat 544.389 kb on + strandat 544.389 kb on + strandat 544.389 kb on + strandat 544.389 kb on + strandat 544.389 kb on + strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.390 kb on - strandat 544.522 kb on + strand, within MPMX19_05060at 544.522 kb on + strand, within MPMX19_05060at 544.522 kb on + strand, within MPMX19_05060at 544.522 kb on + strand, within MPMX19_05060at 544.523 kb on - strand, within MPMX19_05060at 544.523 kb on - strand, within MPMX19_05060at 544.523 kb on - strand, within MPMX19_05060at 544.523 kb on - strand, within MPMX19_05060at 544.585 kb on + strand, within MPMX19_05060at 544.586 kb on - strand, within MPMX19_05060at 544.586 kb on - strand, within MPMX19_05060at 544.641 kb on - strand, within MPMX19_05060at 544.641 kb on - strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.992 kb on + strand, within MPMX19_05061at 544.992 kb on + strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.281 kb on + strandat 545.281 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.361 kb on + strandat 545.361 kb on + strandat 545.364 kb on + strandat 545.365 kb on - strandat 545.366 kb on + strandat 545.367 kb on - strandat 545.367 kb on - strandat 545.373 kb on - strandat 545.439 kb on + strandat 545.440 kb on - strandat 545.440 kb on - strandat 545.511 kb on + strandat 545.511 kb on + strandat 545.512 kb on - strandat 545.599 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.704 kb on + strand, within MPMX19_05062at 545.884 kb on - strandat 545.884 kb on - strandat 545.884 kb on - strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.961 kb on - strandat 545.961 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 546.029 kb on - strandat 546.029 kb on - strandat 546.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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543,886 - MPMX19_05059 0.40 +0.9
543,886 - MPMX19_05059 0.40 +1.3
543,969 + MPMX19_05059 0.51 +0.3
543,969 + MPMX19_05059 0.51 -0.5
543,970 - MPMX19_05059 0.51 -2.0
544,002 + MPMX19_05059 0.55 -0.6
544,002 + MPMX19_05059 0.55 +0.2
544,002 + MPMX19_05059 0.55 +0.3
544,002 + MPMX19_05059 0.55 -0.4
544,003 - MPMX19_05059 0.55 +1.6
544,003 - MPMX19_05059 0.55 -0.2
544,003 - MPMX19_05059 0.55 -0.7
544,003 - MPMX19_05059 0.55 +0.3
544,003 - MPMX19_05059 0.55 +1.1
544,003 - MPMX19_05059 0.55 +0.1
544,003 - MPMX19_05059 0.55 -0.2
544,003 - MPMX19_05059 0.55 -1.1
544,038 + MPMX19_05059 0.60 -0.5
544,038 + MPMX19_05059 0.60 -0.1
544,038 + MPMX19_05059 0.60 -0.2
544,038 + MPMX19_05059 0.60 -0.3
544,038 + MPMX19_05059 0.60 +0.3
544,038 + MPMX19_05059 0.60 -0.4
544,039 - MPMX19_05059 0.60 +0.1
544,039 - MPMX19_05059 0.60 -1.9
544,050 + MPMX19_05059 0.61 -0.1
544,050 + MPMX19_05059 0.61 -0.2
544,050 + MPMX19_05059 0.61 -2.8
544,051 - MPMX19_05059 0.62 -0.8
544,132 - MPMX19_05059 0.72 -1.2
544,146 + MPMX19_05059 0.74 +0.2
544,146 + MPMX19_05059 0.74 -0.8
544,146 + MPMX19_05059 0.74 -2.2
544,146 + MPMX19_05059 0.74 +0.9
544,146 + MPMX19_05059 0.74 -0.4
544,146 + MPMX19_05059 0.74 +0.5
544,146 + MPMX19_05059 0.74 -0.2
544,147 - MPMX19_05059 0.74 +0.0
544,147 - MPMX19_05059 0.74 +0.9
544,147 - MPMX19_05059 0.74 -0.1
544,147 - MPMX19_05059 0.74 -1.4
544,147 - MPMX19_05059 0.74 +0.6
544,147 - MPMX19_05059 0.74 -1.7
544,152 + MPMX19_05059 0.75 +0.3
544,152 + MPMX19_05059 0.75 -1.0
544,152 + MPMX19_05059 0.75 -1.8
544,152 + MPMX19_05059 0.75 -0.9
544,152 + MPMX19_05059 0.75 +0.2
544,152 + MPMX19_05059 0.75 +0.5
544,152 + MPMX19_05059 0.75 -0.2
544,153 - MPMX19_05059 0.75 +0.3
544,153 - MPMX19_05059 0.75 -1.8
544,153 - MPMX19_05059 0.75 +0.9
544,153 - MPMX19_05059 0.75 +0.3
544,153 - MPMX19_05059 0.75 -0.9
544,153 - MPMX19_05059 0.75 -0.2
544,153 - MPMX19_05059 0.75 +0.9
544,153 - MPMX19_05059 0.75 -0.4
544,153 - MPMX19_05059 0.75 -2.1
544,153 - MPMX19_05059 0.75 +0.1
544,153 - MPMX19_05059 0.75 -0.3
544,153 - MPMX19_05059 0.75 -1.4
544,153 - MPMX19_05059 0.75 -0.7
544,153 - MPMX19_05059 0.75 -0.1
544,185 + MPMX19_05059 0.79 -0.2
544,185 + MPMX19_05059 0.79 +0.2
544,185 + MPMX19_05059 0.79 -0.9
544,185 + MPMX19_05059 0.79 +1.4
544,185 + MPMX19_05059 0.79 -1.2
544,186 - MPMX19_05059 0.80 -1.5
544,186 - MPMX19_05059 0.80 +1.9
544,186 - MPMX19_05059 0.80 -0.2
544,186 - MPMX19_05059 0.80 +0.9
544,186 - MPMX19_05059 0.80 -0.9
544,186 - MPMX19_05059 0.80 +0.1
544,373 + +0.8
544,373 + -0.2
544,374 - +2.1
544,374 - -0.4
544,389 + -0.8
544,389 + -0.2
544,389 + -0.1
544,389 + +0.3
544,389 + +1.2
544,389 + +0.8
544,390 - -1.4
544,390 - +0.2
544,390 - +1.9
544,390 - -0.6
544,390 - +1.2
544,390 - -0.1
544,390 - -0.9
544,522 + MPMX19_05060 0.19 +0.1
544,522 + MPMX19_05060 0.19 -0.9
544,522 + MPMX19_05060 0.19 -0.4
544,522 + MPMX19_05060 0.19 -0.7
544,523 - MPMX19_05060 0.19 +1.2
544,523 - MPMX19_05060 0.19 -0.7
544,523 - MPMX19_05060 0.19 -1.8
544,523 - MPMX19_05060 0.19 -0.9
544,585 + MPMX19_05060 0.36 +0.7
544,586 - MPMX19_05060 0.36 -0.1
544,586 - MPMX19_05060 0.36 -1.0
544,641 - MPMX19_05060 0.51 -0.5
544,641 - MPMX19_05060 0.51 -0.9
544,649 + MPMX19_05060 0.53 -0.1
544,649 + MPMX19_05060 0.53 -0.1
544,649 + MPMX19_05060 0.53 -0.1
544,649 + MPMX19_05060 0.53 +0.3
544,649 + MPMX19_05060 0.53 -0.2
544,650 - MPMX19_05060 0.53 -1.5
544,650 - MPMX19_05060 0.53 -0.7
544,650 - MPMX19_05060 0.53 +0.3
544,650 - MPMX19_05060 0.53 -1.1
544,650 - MPMX19_05060 0.53 +0.9
544,650 - MPMX19_05060 0.53 -0.9
544,650 - MPMX19_05060 0.53 -0.4
544,711 + MPMX19_05060 0.69 +0.8
544,711 + MPMX19_05060 0.69 +0.2
544,711 + MPMX19_05060 0.69 -0.4
544,711 + MPMX19_05060 0.69 -1.7
544,711 + MPMX19_05060 0.69 -0.3
544,711 + MPMX19_05060 0.69 +0.3
544,712 - MPMX19_05060 0.69 +0.9
544,712 - MPMX19_05060 0.69 +0.5
544,712 - MPMX19_05060 0.69 -0.1
544,712 - MPMX19_05060 0.69 -0.5
544,712 - MPMX19_05060 0.69 +0.1
544,839 + -0.8
544,839 + -0.3
544,839 + -0.1
544,839 + +1.2
544,839 + -0.2
544,839 + +1.6
544,839 + -0.7
544,839 + -0.8
544,840 - +0.7
544,840 - +0.3
544,840 - +0.1
544,840 - +0.2
544,840 - +0.4
544,840 - -0.7
544,992 + MPMX19_05061 0.27 -0.6
544,992 + MPMX19_05061 0.27 -0.1
544,993 - MPMX19_05061 0.27 -0.6
544,993 - MPMX19_05061 0.27 -1.4
544,993 - MPMX19_05061 0.27 +1.7
544,993 - MPMX19_05061 0.27 -0.1
544,993 - MPMX19_05061 0.27 -0.9
545,046 + MPMX19_05061 0.41 +0.5
545,046 + MPMX19_05061 0.41 +0.0
545,047 - MPMX19_05061 0.41 -0.3
545,047 - MPMX19_05061 0.41 -1.1
545,049 + MPMX19_05061 0.42 +0.5
545,049 + MPMX19_05061 0.42 -0.8
545,049 + MPMX19_05061 0.42 +1.1
545,049 + MPMX19_05061 0.42 -0.9
545,049 + MPMX19_05061 0.42 -1.1
545,049 + MPMX19_05061 0.42 +0.1
545,049 + MPMX19_05061 0.42 +2.6
545,049 + MPMX19_05061 0.42 -1.4
545,049 + MPMX19_05061 0.42 +0.5
545,049 + MPMX19_05061 0.42 -1.5
545,049 + MPMX19_05061 0.42 -0.2
545,049 + MPMX19_05061 0.42 -0.9
545,049 + MPMX19_05061 0.42 -0.3
545,049 + MPMX19_05061 0.42 +0.3
545,049 + MPMX19_05061 0.42 -0.6
545,049 + MPMX19_05061 0.42 -1.0
545,049 + MPMX19_05061 0.42 -0.4
545,049 + MPMX19_05061 0.42 -0.1
545,050 - MPMX19_05061 0.42 -0.5
545,050 - MPMX19_05061 0.42 -0.3
545,050 - MPMX19_05061 0.42 -1.7
545,050 - MPMX19_05061 0.42 -0.9
545,050 - MPMX19_05061 0.42 -0.9
545,050 - MPMX19_05061 0.42 -0.4
545,050 - MPMX19_05061 0.42 -0.2
545,050 - MPMX19_05061 0.42 +0.2
545,050 - MPMX19_05061 0.42 -0.1
545,050 - MPMX19_05061 0.42 +0.2
545,281 + -0.3
545,281 + -0.9
545,356 + +0.3
545,356 + +0.3
545,356 + -0.8
545,361 + -1.2
545,361 + -1.5
545,364 + +0.3
545,365 - -1.6
545,366 + -0.1
545,367 - -0.8
545,367 - -0.2
545,373 - -1.8
545,439 + -0.1
545,440 - -0.9
545,440 - +1.5
545,511 + +1.3
545,511 + -0.2
545,512 - -0.8
545,599 + +0.9
545,632 + +0.1
545,632 + -0.4
545,632 + -0.9
545,633 - +0.0
545,633 - +1.1
545,633 - +0.6
545,633 - -0.0
545,704 + MPMX19_05062 0.40 -0.2
545,884 - -2.3
545,884 - -0.4
545,884 - +1.2
545,960 + -0.2
545,960 + +0.3
545,960 + -1.6
545,960 + -0.9
545,961 - -0.3
545,961 - +1.3
545,970 - +0.0
545,970 - -0.8
545,970 - -0.5
546,029 - +3.1
546,029 - +0.6
546,062 + -0.4

Or see this region's nucleotide sequence