Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05039

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05036 and MPMX19_05037 are separated by 1 nucleotidesMPMX19_05037 and MPMX19_05038 overlap by 4 nucleotidesMPMX19_05038 and MPMX19_05039 overlap by 4 nucleotidesMPMX19_05039 and MPMX19_05040 are separated by 238 nucleotidesMPMX19_05040 and MPMX19_05041 overlap by 4 nucleotides MPMX19_05036: MPMX19_05036 - hypothetical protein, at 522,412 to 522,711 _05036 MPMX19_05037: MPMX19_05037 - hypothetical protein, at 522,713 to 522,991 _05037 MPMX19_05038: MPMX19_05038 - ATP synthase epsilon chain, at 522,988 to 523,446 _05038 MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906 _05039 MPMX19_05040: MPMX19_05040 - hypothetical protein, at 525,145 to 525,705 _05040 MPMX19_05041: MPMX19_05041 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 525,702 to 526,760 _05041 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.771 kb on + strand, within MPMX19_05039at 523.841 kb on - strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.146 kb on + strandat 525.251 kb on + strand, within MPMX19_05040at 525.252 kb on - strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.469 kb on + strand, within MPMX19_05040at 525.470 kb on - strand, within MPMX19_05040at 525.470 kb on - strand, within MPMX19_05040at 525.566 kb on + strand, within MPMX19_05040

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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522,575 + MPMX19_05036 0.54 -1.2
522,575 + MPMX19_05036 0.54 +0.2
522,575 + MPMX19_05036 0.54 +1.4
522,575 + MPMX19_05036 0.54 -0.2
522,576 - MPMX19_05036 0.55 -0.1
522,576 - MPMX19_05036 0.55 +1.5
522,576 - MPMX19_05036 0.55 -0.2
522,604 + MPMX19_05036 0.64 -0.2
522,604 + MPMX19_05036 0.64 +0.7
522,611 + MPMX19_05036 0.66 -1.7
522,611 + MPMX19_05036 0.66 -1.1
522,611 + MPMX19_05036 0.66 -1.8
522,611 + MPMX19_05036 0.66 -1.2
522,611 + MPMX19_05036 0.66 +0.3
522,611 + MPMX19_05036 0.66 -0.7
522,611 + MPMX19_05036 0.66 +0.1
522,611 + MPMX19_05036 0.66 +0.9
522,611 + MPMX19_05036 0.66 -0.2
522,612 - MPMX19_05036 0.67 -1.2
522,612 - MPMX19_05036 0.67 +0.5
522,612 - MPMX19_05036 0.67 -0.2
522,612 - MPMX19_05036 0.67 +0.1
522,612 - MPMX19_05036 0.67 +1.1
522,612 - MPMX19_05036 0.67 +0.6
522,612 - MPMX19_05036 0.67 -0.1
522,612 - MPMX19_05036 0.67 -0.9
522,612 - MPMX19_05036 0.67 +0.2
522,612 - MPMX19_05036 0.67 +0.9
523,058 + MPMX19_05038 0.15 -0.1
523,058 + MPMX19_05038 0.15 -0.4
523,058 + MPMX19_05038 0.15 -0.4
523,058 + MPMX19_05038 0.15 -1.9
523,058 + MPMX19_05038 0.15 +0.3
523,058 + MPMX19_05038 0.15 -0.3
523,058 + MPMX19_05038 0.15 +0.5
523,059 - MPMX19_05038 0.15 +0.6
523,059 - MPMX19_05038 0.15 +0.8
523,059 - MPMX19_05038 0.15 +0.6
523,059 - MPMX19_05038 0.15 +3.9
523,059 - MPMX19_05038 0.15 +0.3
523,059 - MPMX19_05038 0.15 +0.1
523,059 - MPMX19_05038 0.15 -1.4
523,771 + MPMX19_05039 0.22 -1.0
523,841 - MPMX19_05039 0.27 -0.9
523,942 + MPMX19_05039 0.34 -0.4
523,942 + MPMX19_05039 0.34 +1.3
523,942 + MPMX19_05039 0.34 +0.3
523,942 + MPMX19_05039 0.34 +0.9
523,942 + MPMX19_05039 0.34 +0.1
523,942 + MPMX19_05039 0.34 -1.5
523,942 + MPMX19_05039 0.34 -0.7
523,942 + MPMX19_05039 0.34 +0.6
523,942 + MPMX19_05039 0.34 -1.8
523,942 + MPMX19_05039 0.34 -0.9
523,942 + MPMX19_05039 0.34 +0.4
523,942 + MPMX19_05039 0.34 -1.1
523,942 + MPMX19_05039 0.34 -1.2
523,942 + MPMX19_05039 0.34 +0.6
523,942 + MPMX19_05039 0.34 -0.8
523,942 + MPMX19_05039 0.34 -1.3
523,942 + MPMX19_05039 0.34 -0.3
523,943 - MPMX19_05039 0.34 +0.4
523,943 - MPMX19_05039 0.34 +0.3
523,943 - MPMX19_05039 0.34 +0.6
523,943 - MPMX19_05039 0.34 -0.2
523,943 - MPMX19_05039 0.34 -0.7
523,943 - MPMX19_05039 0.34 +0.5
523,943 - MPMX19_05039 0.34 -0.0
523,943 - MPMX19_05039 0.34 -0.4
523,943 - MPMX19_05039 0.34 +0.1
525,085 + +0.1
525,085 + -0.5
525,085 + -1.9
525,085 + -0.7
525,085 + +0.7
525,085 + +0.3
525,085 + -0.9
525,085 + -0.5
525,085 + +0.2
525,086 - +0.3
525,086 - +0.2
525,086 - -1.0
525,086 - +0.9
525,086 - -0.7
525,086 - +1.3
525,086 - +0.4
525,086 - -0.7
525,086 - +0.0
525,086 - -0.7
525,086 - +1.7
525,086 - -0.4
525,146 + +0.8
525,251 + MPMX19_05040 0.19 -0.9
525,252 - MPMX19_05040 0.19 -1.6
525,308 + MPMX19_05040 0.29 -0.7
525,308 + MPMX19_05040 0.29 -1.4
525,308 + MPMX19_05040 0.29 -1.0
525,308 + MPMX19_05040 0.29 -0.7
525,308 + MPMX19_05040 0.29 -1.7
525,308 + MPMX19_05040 0.29 +1.3
525,308 + MPMX19_05040 0.29 +1.2
525,308 + MPMX19_05040 0.29 -1.7
525,308 + MPMX19_05040 0.29 -0.4
525,308 + MPMX19_05040 0.29 -0.2
525,309 - MPMX19_05040 0.29 -1.5
525,309 - MPMX19_05040 0.29 -1.7
525,309 - MPMX19_05040 0.29 -0.4
525,309 - MPMX19_05040 0.29 -1.1
525,309 - MPMX19_05040 0.29 +0.2
525,469 + MPMX19_05040 0.58 -0.9
525,470 - MPMX19_05040 0.58 +1.5
525,470 - MPMX19_05040 0.58 +0.1
525,566 + MPMX19_05040 0.75 +2.5

Or see this region's nucleotide sequence