Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04980 and MPMX19_04981 are separated by 10 nucleotides MPMX19_04981 and MPMX19_04982 are separated by 13 nucleotides MPMX19_04982 and MPMX19_04983 are separated by 7 nucleotides
MPMX19_04980: MPMX19_04980 - hypothetical protein, at 452,613 to 454,451
_04980
MPMX19_04981: MPMX19_04981 - hypothetical protein, at 454,462 to 455,157
_04981
MPMX19_04982: MPMX19_04982 - hypothetical protein, at 455,171 to 456,856
_04982
MPMX19_04983: MPMX19_04983 - hypothetical protein, at 456,864 to 460,361
_04983
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.329 kb on + strand at 454.329 kb on + strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.345 kb on - strand at 454.345 kb on - strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.450 kb on - strand at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.934 kb on - strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.182 kb on - strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.250 kb on - strand at 455.250 kb on - strand at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.657 kb on + strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.703 kb on - strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.997 kb on - strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.314 kb on - strand, within MPMX19_04982 at 456.314 kb on - strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.677 kb on + strand, within MPMX19_04982 at 456.698 kb on + strand at 456.698 kb on + strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.700 kb on + strand at 456.759 kb on - strand at 456.759 kb on - strand at 456.759 kb on - strand at 457.054 kb on + strand at 457.055 kb on - strand at 457.055 kb on - strand at 457.096 kb on + strand at 457.097 kb on - strand at 457.202 kb on - strand at 457.202 kb on - strand at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.453 kb on + strand, within MPMX19_04983 at 457.453 kb on + strand, within MPMX19_04983 at 457.454 kb on - strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.469 kb on - strand, within MPMX19_04983
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 454,242 + MPMX19_04980 0.89 -2.8 454,242 + MPMX19_04980 0.89 +0.0 454,242 + MPMX19_04980 0.89 +0.1 454,242 + MPMX19_04980 0.89 -0.2 454,242 + MPMX19_04980 0.89 -0.1 454,243 - MPMX19_04980 0.89 +0.1 454,243 - MPMX19_04980 0.89 +0.2 454,243 - MPMX19_04980 0.89 +2.1 454,329 + -1.9 454,329 + -0.9 454,330 - +1.5 454,330 - +0.5 454,330 - -0.9 454,330 - +0.5 454,330 - +1.4 454,330 - -0.6 454,345 - -1.3 454,345 - +0.9 454,356 + +0.4 454,356 + +1.9 454,356 + -1.1 454,356 + +0.0 454,356 + -0.4 454,356 + -0.2 454,356 + -0.3 454,356 + -1.5 454,356 + -0.2 454,356 + -1.8 454,356 + +0.6 454,356 + -0.4 454,356 + +0.2 454,356 + -0.6 454,356 + -1.2 454,356 + -0.4 454,356 + -0.6 454,357 - +0.4 454,357 - -0.1 454,357 - +1.4 454,357 - -0.1 454,357 - -0.3 454,357 - +1.0 454,357 - -1.8 454,357 - -1.2 454,357 - +0.9 454,357 - -1.8 454,357 - +0.1 454,357 - -1.1 454,357 - -0.6 454,357 - +1.1 454,437 + -1.5 454,437 + +0.6 454,437 + +0.5 454,437 + +0.7 454,437 + -0.1 454,437 + +1.3 454,437 + -0.7 454,437 + +1.3 454,437 + -0.8 454,437 + +0.7 454,437 + -0.2 454,437 + -1.4 454,437 + +0.5 454,437 + -0.6 454,438 - +0.4 454,438 - +0.4 454,438 - -1.1 454,438 - +0.1 454,438 - -0.8 454,438 - +0.4 454,438 - -1.0 454,449 + -1.9 454,449 + +0.7 454,450 - -0.1 454,699 + MPMX19_04981 0.34 +1.6 454,699 + MPMX19_04981 0.34 -0.3 454,699 + MPMX19_04981 0.34 +1.9 454,699 + MPMX19_04981 0.34 +1.7 454,699 + MPMX19_04981 0.34 +0.1 454,699 + MPMX19_04981 0.34 -1.5 454,699 + MPMX19_04981 0.34 -0.4 454,699 + MPMX19_04981 0.34 -0.9 454,699 + MPMX19_04981 0.34 -2.1 454,699 + MPMX19_04981 0.34 -0.6 454,700 - MPMX19_04981 0.34 -1.5 454,700 - MPMX19_04981 0.34 +0.6 454,700 - MPMX19_04981 0.34 +0.2 454,700 - MPMX19_04981 0.34 +0.2 454,708 + MPMX19_04981 0.35 -1.6 454,708 + MPMX19_04981 0.35 -1.4 454,708 + MPMX19_04981 0.35 -1.4 454,708 + MPMX19_04981 0.35 +1.1 454,708 + MPMX19_04981 0.35 +0.3 454,708 + MPMX19_04981 0.35 -1.8 454,708 + MPMX19_04981 0.35 -1.6 454,709 - MPMX19_04981 0.35 -1.5 454,709 - MPMX19_04981 0.35 -0.5 454,709 - MPMX19_04981 0.35 +1.2 454,709 - MPMX19_04981 0.35 -0.1 454,709 - MPMX19_04981 0.35 +1.1 454,837 + MPMX19_04981 0.54 -0.2 454,837 + MPMX19_04981 0.54 -0.3 454,837 + MPMX19_04981 0.54 -0.3 454,837 + MPMX19_04981 0.54 -0.5 454,837 + MPMX19_04981 0.54 -0.4 454,837 + MPMX19_04981 0.54 +0.4 454,837 + MPMX19_04981 0.54 -0.6 454,837 + MPMX19_04981 0.54 -0.1 454,837 + MPMX19_04981 0.54 +0.1 454,837 + MPMX19_04981 0.54 -0.2 454,837 + MPMX19_04981 0.54 +1.2 454,838 - MPMX19_04981 0.54 -2.3 454,838 - MPMX19_04981 0.54 -0.6 454,838 - MPMX19_04981 0.54 +0.1 454,838 - MPMX19_04981 0.54 +0.7 454,838 - MPMX19_04981 0.54 +0.2 454,838 - MPMX19_04981 0.54 -1.7 454,934 - MPMX19_04981 0.68 -0.4 454,939 + MPMX19_04981 0.69 -0.3 454,939 + MPMX19_04981 0.69 -0.6 454,939 + MPMX19_04981 0.69 -0.6 454,939 + MPMX19_04981 0.69 -1.1 454,939 + MPMX19_04981 0.69 +0.1 454,939 + MPMX19_04981 0.69 -0.1 454,940 - MPMX19_04981 0.69 -0.1 454,940 - MPMX19_04981 0.69 +0.2 454,940 - MPMX19_04981 0.69 -0.5 455,155 + -0.3 455,155 + -0.6 455,155 + +0.1 455,155 + -1.6 455,155 + -0.4 455,155 + -0.3 455,156 - +0.1 455,182 - +1.1 455,249 + -1.2 455,249 + -1.5 455,249 + -0.6 455,249 + +0.4 455,250 - +1.1 455,250 - -2.2 455,469 + MPMX19_04982 0.18 +0.7 455,469 + MPMX19_04982 0.18 -0.5 455,469 + MPMX19_04982 0.18 -1.1 455,469 + MPMX19_04982 0.18 -1.7 455,469 + MPMX19_04982 0.18 +0.0 455,594 + MPMX19_04982 0.25 -0.9 455,594 + MPMX19_04982 0.25 +0.8 455,595 - MPMX19_04982 0.25 -0.6 455,595 - MPMX19_04982 0.25 -0.8 455,621 + MPMX19_04982 0.27 +0.4 455,621 + MPMX19_04982 0.27 +0.5 455,621 + MPMX19_04982 0.27 -0.6 455,621 + MPMX19_04982 0.27 -0.5 455,621 - MPMX19_04982 0.27 -0.3 455,622 - MPMX19_04982 0.27 +0.9 455,622 - MPMX19_04982 0.27 +0.6 455,622 - MPMX19_04982 0.27 -0.8 455,657 + MPMX19_04982 0.29 +0.6 455,658 - MPMX19_04982 0.29 -1.4 455,658 - MPMX19_04982 0.29 +0.6 455,658 - MPMX19_04982 0.29 +0.1 455,702 + MPMX19_04982 0.31 -0.2 455,702 + MPMX19_04982 0.31 -1.3 455,703 - MPMX19_04982 0.32 -1.6 455,987 + MPMX19_04982 0.48 +0.4 455,987 + MPMX19_04982 0.48 +0.4 455,987 + MPMX19_04982 0.48 -1.1 455,988 - MPMX19_04982 0.48 -2.0 455,988 - MPMX19_04982 0.48 +0.0 455,988 - MPMX19_04982 0.48 -0.5 455,997 - MPMX19_04982 0.49 -0.1 456,029 + MPMX19_04982 0.51 -1.5 456,029 + MPMX19_04982 0.51 -1.8 456,030 - MPMX19_04982 0.51 -0.4 456,030 - MPMX19_04982 0.51 -0.1 456,314 - MPMX19_04982 0.68 -0.5 456,314 - MPMX19_04982 0.68 +0.9 456,449 + MPMX19_04982 0.76 +0.7 456,449 + MPMX19_04982 0.76 -1.4 456,449 + MPMX19_04982 0.76 -1.1 456,449 + MPMX19_04982 0.76 +0.4 456,449 + MPMX19_04982 0.76 +0.8 456,449 + MPMX19_04982 0.76 -0.2 456,449 + MPMX19_04982 0.76 -0.6 456,449 + MPMX19_04982 0.76 -0.8 456,449 + MPMX19_04982 0.76 +0.5 456,449 + MPMX19_04982 0.76 -0.8 456,449 + MPMX19_04982 0.76 -0.9 456,449 + MPMX19_04982 0.76 -2.4 456,450 - MPMX19_04982 0.76 +0.2 456,450 - MPMX19_04982 0.76 -0.3 456,450 - MPMX19_04982 0.76 -0.1 456,450 - MPMX19_04982 0.76 -0.4 456,450 - MPMX19_04982 0.76 -0.5 456,450 - MPMX19_04982 0.76 -1.4 456,452 + MPMX19_04982 0.76 -0.6 456,452 + MPMX19_04982 0.76 -0.2 456,452 + MPMX19_04982 0.76 -0.8 456,452 + MPMX19_04982 0.76 +0.4 456,453 - MPMX19_04982 0.76 -1.2 456,453 - MPMX19_04982 0.76 -1.1 456,453 - MPMX19_04982 0.76 -0.7 456,453 - MPMX19_04982 0.76 +0.5 456,453 - MPMX19_04982 0.76 +0.2 456,453 - MPMX19_04982 0.76 +0.0 456,453 - MPMX19_04982 0.76 -0.2 456,677 + MPMX19_04982 0.89 +0.1 456,698 + +1.5 456,698 + -0.9 456,699 - -0.3 456,699 - -1.0 456,699 - +0.1 456,699 - -1.2 456,699 - +0.9 456,700 + -1.6 456,759 - +0.1 456,759 - -0.0 456,759 - -1.1 457,054 + -0.2 457,055 - +0.1 457,055 - -1.5 457,096 + +0.6 457,097 - -1.2 457,202 - +1.5 457,202 - -0.9 457,324 + MPMX19_04983 0.13 +0.7 457,324 + MPMX19_04983 0.13 +0.1 457,324 + MPMX19_04983 0.13 -1.9 457,324 + MPMX19_04983 0.13 +1.2 457,324 + MPMX19_04983 0.13 +0.6 457,325 - MPMX19_04983 0.13 -1.1 457,325 - MPMX19_04983 0.13 +0.4 457,325 - MPMX19_04983 0.13 +0.2 457,325 - MPMX19_04983 0.13 +0.4 457,325 - MPMX19_04983 0.13 -0.1 457,325 - MPMX19_04983 0.13 -0.5 457,325 - MPMX19_04983 0.13 +0.1 457,336 + MPMX19_04983 0.13 -3.0 457,336 + MPMX19_04983 0.13 +0.4 457,336 + MPMX19_04983 0.13 -0.1 457,336 + MPMX19_04983 0.13 +1.4 457,337 - MPMX19_04983 0.14 +1.1 457,337 - MPMX19_04983 0.14 -0.1 457,337 - MPMX19_04983 0.14 -0.4 457,337 - MPMX19_04983 0.14 -0.4 457,337 - MPMX19_04983 0.14 -0.4 457,337 - MPMX19_04983 0.14 -0.2 457,337 - MPMX19_04983 0.14 -0.4 457,337 - MPMX19_04983 0.14 +0.8 457,453 + MPMX19_04983 0.17 -0.6 457,453 + MPMX19_04983 0.17 -0.8 457,454 - MPMX19_04983 0.17 -0.1 457,468 + MPMX19_04983 0.17 -2.2 457,468 + MPMX19_04983 0.17 -0.1 457,468 + MPMX19_04983 0.17 +0.3 457,469 - MPMX19_04983 0.17 +0.1
Or see this region's nucleotide sequence