Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04971 and MPMX19_04972 are separated by 136 nucleotides MPMX19_04972 and MPMX19_04973 are separated by 37 nucleotides MPMX19_04973 and MPMX19_04974 are separated by 11 nucleotides
MPMX19_04971: MPMX19_04971 - Sensor histidine kinase RcsC, at 439,625 to 442,258
_04971
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
MPMX19_04973: MPMX19_04973 - hypothetical protein, at 443,761 to 444,159
_04973
MPMX19_04974: MPMX19_04974 - Nitrobenzene nitroreductase, at 444,171 to 444,872
_04974
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 442.052 kb on + strand at 442.053 kb on - strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.359 kb on - strand at 442.359 kb on - strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.379 kb on - strand at 442.379 kb on - strand at 442.456 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.472 kb on - strand at 442.472 kb on - strand at 442.594 kb on + strand, within MPMX19_04972 at 442.594 kb on + strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.659 kb on + strand, within MPMX19_04972 at 442.660 kb on - strand, within MPMX19_04972 at 442.981 kb on - strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.050 kb on - strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.621 kb on + strand at 443.683 kb on + strand at 443.684 kb on - strand at 443.748 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.769 kb on - strand at 443.777 kb on + strand at 443.777 kb on + strand at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.046 kb on - strand, within MPMX19_04973 at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.544 kb on + strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.613 kb on + strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 441,662 + MPMX19_04971 0.77 -0.5 441,662 + MPMX19_04971 0.77 +0.6 441,662 + MPMX19_04971 0.77 -0.2 441,662 + MPMX19_04971 0.77 -0.9 441,662 + MPMX19_04971 0.77 -0.2 441,662 + MPMX19_04971 0.77 -0.5 441,662 + MPMX19_04971 0.77 -1.1 441,663 - MPMX19_04971 0.77 +1.9 441,663 - MPMX19_04971 0.77 -1.1 441,663 - MPMX19_04971 0.77 -2.1 441,663 - MPMX19_04971 0.77 -0.2 441,663 - MPMX19_04971 0.77 -0.1 441,663 - MPMX19_04971 0.77 -0.8 441,663 - MPMX19_04971 0.77 -0.6 441,663 - MPMX19_04971 0.77 -1.7 441,663 - MPMX19_04971 0.77 -1.0 441,956 + MPMX19_04971 0.88 -0.2 441,956 + MPMX19_04971 0.88 -0.4 441,956 + MPMX19_04971 0.88 +0.4 441,956 + MPMX19_04971 0.88 +0.0 441,956 + MPMX19_04971 0.88 -0.1 442,052 + -1.1 442,053 - -0.9 442,358 + +0.7 442,358 + +0.9 442,358 + -0.6 442,359 - -2.3 442,359 - +0.4 442,378 + +0.1 442,378 + -0.4 442,378 + +0.7 442,378 + +1.0 442,379 - -1.8 442,379 - -0.2 442,456 + -1.2 442,471 + -0.9 442,471 + +0.2 442,471 + -0.3 442,472 - -1.0 442,472 - -0.3 442,594 + MPMX19_04972 0.15 -1.6 442,594 + MPMX19_04972 0.15 +1.9 442,624 - MPMX19_04972 0.17 -1.2 442,624 - MPMX19_04972 0.17 -1.2 442,659 + MPMX19_04972 0.20 +0.1 442,660 - MPMX19_04972 0.20 -1.2 442,981 - MPMX19_04972 0.44 -0.2 443,049 + MPMX19_04972 0.49 -1.1 443,049 + MPMX19_04972 0.49 -0.3 443,049 + MPMX19_04972 0.49 +0.7 443,049 + MPMX19_04972 0.49 -0.5 443,050 - MPMX19_04972 0.49 -0.4 443,268 + MPMX19_04972 0.66 -1.2 443,268 + MPMX19_04972 0.66 -1.1 443,269 - MPMX19_04972 0.66 -0.6 443,269 - MPMX19_04972 0.66 -1.4 443,286 + MPMX19_04972 0.67 -0.3 443,286 + MPMX19_04972 0.67 -0.3 443,286 + MPMX19_04972 0.67 -1.3 443,286 + MPMX19_04972 0.67 -0.8 443,286 + MPMX19_04972 0.67 -0.2 443,286 + MPMX19_04972 0.67 -2.3 443,286 + MPMX19_04972 0.67 +0.7 443,287 - MPMX19_04972 0.67 -1.4 443,287 - MPMX19_04972 0.67 +1.0 443,287 - MPMX19_04972 0.67 -1.6 443,457 + MPMX19_04972 0.80 -0.2 443,457 + MPMX19_04972 0.80 +0.6 443,457 + MPMX19_04972 0.80 -0.2 443,457 + MPMX19_04972 0.80 -0.9 443,457 + MPMX19_04972 0.80 +0.8 443,458 - MPMX19_04972 0.80 -0.7 443,458 - MPMX19_04972 0.80 -0.9 443,458 - MPMX19_04972 0.80 -1.7 443,458 - MPMX19_04972 0.80 +1.6 443,458 - MPMX19_04972 0.80 +0.9 443,458 - MPMX19_04972 0.80 -1.0 443,458 - MPMX19_04972 0.80 +0.1 443,505 - MPMX19_04972 0.84 -1.1 443,505 - MPMX19_04972 0.84 -0.1 443,621 + -0.3 443,683 + +1.0 443,684 - -0.2 443,748 + +0.6 443,768 + -1.4 443,768 + -0.8 443,768 + +0.1 443,769 - +1.4 443,777 + -0.2 443,777 + +1.3 444,043 + MPMX19_04973 0.71 +0.0 444,043 + MPMX19_04973 0.71 +0.1 444,043 + MPMX19_04973 0.71 +0.1 444,043 + MPMX19_04973 0.71 -0.1 444,044 - MPMX19_04973 0.71 +0.0 444,044 - MPMX19_04973 0.71 +1.0 444,044 - MPMX19_04973 0.71 -0.9 444,044 - MPMX19_04973 0.71 -1.6 444,044 - MPMX19_04973 0.71 -1.4 444,044 - MPMX19_04973 0.71 -1.0 444,044 - MPMX19_04973 0.71 -0.6 444,044 - MPMX19_04973 0.71 +0.4 444,044 - MPMX19_04973 0.71 +1.0 444,044 - MPMX19_04973 0.71 -0.7 444,044 - MPMX19_04973 0.71 -0.5 444,046 - MPMX19_04973 0.71 +0.8 444,157 + -0.5 444,157 + +0.7 444,157 + -0.4 444,157 + -0.0 444,157 + -0.7 444,157 + -2.1 444,157 + -1.6 444,157 + +0.4 444,157 + +1.0 444,157 + -0.6 444,158 - -1.9 444,158 - -0.6 444,158 - +2.0 444,329 - MPMX19_04974 0.23 +0.3 444,329 - MPMX19_04974 0.23 -0.4 444,329 - MPMX19_04974 0.23 -1.4 444,544 + MPMX19_04974 0.53 +0.2 444,545 - MPMX19_04974 0.53 +1.3 444,545 - MPMX19_04974 0.53 +0.2 444,580 + MPMX19_04974 0.58 -0.6 444,580 + MPMX19_04974 0.58 -0.9 444,581 - MPMX19_04974 0.58 +0.4 444,581 - MPMX19_04974 0.58 -0.0 444,581 - MPMX19_04974 0.58 -0.6 444,605 - MPMX19_04974 0.62 +0.6 444,605 - MPMX19_04974 0.62 -0.8 444,605 - MPMX19_04974 0.62 +0.5 444,607 + MPMX19_04974 0.62 +1.3 444,607 + MPMX19_04974 0.62 +0.2 444,608 - MPMX19_04974 0.62 +0.2 444,608 - MPMX19_04974 0.62 +1.5 444,608 - MPMX19_04974 0.62 -1.7 444,608 - MPMX19_04974 0.62 -1.4 444,608 - MPMX19_04974 0.62 +0.3 444,608 - MPMX19_04974 0.62 -0.9 444,608 - MPMX19_04974 0.62 -0.1 444,608 - MPMX19_04974 0.62 -0.6 444,613 + MPMX19_04974 0.63 -0.6 444,614 - MPMX19_04974 0.63 +0.5 444,614 - MPMX19_04974 0.63 -0.4
Or see this region's nucleotide sequence