Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04940

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04939 and MPMX19_04940 overlap by 4 nucleotidesMPMX19_04940 and MPMX19_04941 overlap by 4 nucleotidesMPMX19_04941 and MPMX19_04942 are separated by 99 nucleotides MPMX19_04939: MPMX19_04939 - 8-oxoguanine deaminase, at 401,941 to 403,305 _04939 MPMX19_04940: MPMX19_04940 - Histidine ammonia-lyase, at 403,302 to 404,840 _04940 MPMX19_04941: MPMX19_04941 - hypothetical protein, at 404,837 to 405,652 _04941 MPMX19_04942: MPMX19_04942 - hypothetical protein, at 405,752 to 406,402 _04942 Position (kb) 403 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1at 402.304 kb on + strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.679 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.865 kb on + strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.866 kb on - strand, within MPMX19_04939at 402.949 kb on + strand, within MPMX19_04939at 402.949 kb on + strand, within MPMX19_04939at 402.949 kb on + strand, within MPMX19_04939at 402.949 kb on + strand, within MPMX19_04939at 402.950 kb on - strand, within MPMX19_04939at 403.362 kb on + strandat 403.362 kb on + strandat 403.362 kb on + strandat 403.362 kb on + strandat 403.362 kb on + strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.363 kb on - strandat 403.401 kb on + strandat 403.464 kb on + strand, within MPMX19_04940at 403.464 kb on + strand, within MPMX19_04940at 403.464 kb on + strand, within MPMX19_04940at 403.465 kb on - strand, within MPMX19_04940at 403.465 kb on - strand, within MPMX19_04940at 403.465 kb on - strand, within MPMX19_04940at 403.465 kb on - strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.683 kb on + strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 403.684 kb on - strand, within MPMX19_04940at 404.148 kb on + strand, within MPMX19_04940at 404.148 kb on + strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.627 kb on + strand, within MPMX19_04940at 404.628 kb on - strand, within MPMX19_04940at 404.628 kb on - strand, within MPMX19_04940at 404.629 kb on + strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.733 kb on + strandat 404.733 kb on + strandat 404.734 kb on - strandat 404.748 kb on + strandat 404.749 kb on - strandat 404.749 kb on - strandat 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 405.035 kb on + strand, within MPMX19_04941at 405.035 kb on + strand, within MPMX19_04941at 405.036 kb on - strand, within MPMX19_04941at 405.044 kb on + strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.086 kb on + strand, within MPMX19_04941at 405.200 kb on + strand, within MPMX19_04941at 405.200 kb on + strand, within MPMX19_04941at 405.201 kb on - strand, within MPMX19_04941at 405.213 kb on - strand, within MPMX19_04941at 405.213 kb on - strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.480 kb on - strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.653 kb on + strandat 405.653 kb on + strandat 405.653 kb on + strandat 405.654 kb on - strandat 405.654 kb on - strandat 405.833 kb on + strand, within MPMX19_04942

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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402,304 + MPMX19_04939 0.27 -0.4
402,305 - MPMX19_04939 0.27 -1.7
402,305 - MPMX19_04939 0.27 -0.7
402,305 - MPMX19_04939 0.27 -0.6
402,305 - MPMX19_04939 0.27 -0.8
402,305 - MPMX19_04939 0.27 -0.9
402,335 - MPMX19_04939 0.29 -1.8
402,335 - MPMX19_04939 0.29 +1.1
402,335 - MPMX19_04939 0.29 -1.0
402,418 + MPMX19_04939 0.35 -1.0
402,418 + MPMX19_04939 0.35 -0.4
402,418 + MPMX19_04939 0.35 +1.2
402,418 + MPMX19_04939 0.35 +0.6
402,418 + MPMX19_04939 0.35 -0.6
402,418 + MPMX19_04939 0.35 -0.2
402,419 - MPMX19_04939 0.35 +0.0
402,419 - MPMX19_04939 0.35 -0.3
402,419 - MPMX19_04939 0.35 -0.7
402,419 - MPMX19_04939 0.35 +0.7
402,419 - MPMX19_04939 0.35 +1.1
402,419 - MPMX19_04939 0.35 -0.2
402,519 + MPMX19_04939 0.42 -1.2
402,519 + MPMX19_04939 0.42 -0.7
402,519 + MPMX19_04939 0.42 -0.3
402,519 + MPMX19_04939 0.42 -1.4
402,519 + MPMX19_04939 0.42 +0.2
402,519 + MPMX19_04939 0.42 -0.9
402,519 + MPMX19_04939 0.42 -1.0
402,519 + MPMX19_04939 0.42 -0.0
402,519 + MPMX19_04939 0.42 -0.8
402,519 + MPMX19_04939 0.42 +0.4
402,519 + MPMX19_04939 0.42 -1.0
402,519 + MPMX19_04939 0.42 +0.4
402,519 + MPMX19_04939 0.42 -0.6
402,520 - MPMX19_04939 0.42 -0.0
402,520 - MPMX19_04939 0.42 -1.2
402,520 - MPMX19_04939 0.42 -0.8
402,520 - MPMX19_04939 0.42 -0.6
402,520 - MPMX19_04939 0.42 -2.7
402,520 - MPMX19_04939 0.42 -0.6
402,520 - MPMX19_04939 0.42 -1.4
402,520 - MPMX19_04939 0.42 +0.3
402,520 - MPMX19_04939 0.42 -0.6
402,520 - MPMX19_04939 0.42 -0.8
402,520 - MPMX19_04939 0.42 -0.8
402,520 - MPMX19_04939 0.42 -0.7
402,520 - MPMX19_04939 0.42 -0.9
402,523 + MPMX19_04939 0.43 +0.5
402,523 + MPMX19_04939 0.43 -1.5
402,523 + MPMX19_04939 0.43 -2.2
402,523 + MPMX19_04939 0.43 -1.4
402,523 + MPMX19_04939 0.43 -1.5
402,523 + MPMX19_04939 0.43 -0.4
402,523 + MPMX19_04939 0.43 -0.2
402,523 + MPMX19_04939 0.43 -0.6
402,524 - MPMX19_04939 0.43 -0.0
402,524 - MPMX19_04939 0.43 +1.0
402,524 - MPMX19_04939 0.43 -1.0
402,524 - MPMX19_04939 0.43 -0.1
402,524 - MPMX19_04939 0.43 -2.1
402,524 - MPMX19_04939 0.43 -1.0
402,524 - MPMX19_04939 0.43 -0.5
402,524 - MPMX19_04939 0.43 +0.2
402,524 - MPMX19_04939 0.43 +0.1
402,524 - MPMX19_04939 0.43 +0.6
402,679 + MPMX19_04939 0.54 -1.0
402,865 + MPMX19_04939 0.68 -0.2
402,865 + MPMX19_04939 0.68 -0.6
402,865 + MPMX19_04939 0.68 -0.5
402,865 + MPMX19_04939 0.68 -1.1
402,865 + MPMX19_04939 0.68 +0.4
402,865 + MPMX19_04939 0.68 -0.4
402,865 + MPMX19_04939 0.68 +0.6
402,865 + MPMX19_04939 0.68 -0.5
402,865 + MPMX19_04939 0.68 +0.8
402,865 + MPMX19_04939 0.68 +0.6
402,865 + MPMX19_04939 0.68 -1.3
402,865 + MPMX19_04939 0.68 -0.8
402,865 + MPMX19_04939 0.68 -0.5
402,865 + MPMX19_04939 0.68 -1.7
402,866 - MPMX19_04939 0.68 -1.6
402,866 - MPMX19_04939 0.68 -0.0
402,866 - MPMX19_04939 0.68 +0.4
402,866 - MPMX19_04939 0.68 +0.7
402,866 - MPMX19_04939 0.68 -0.5
402,866 - MPMX19_04939 0.68 -0.7
402,949 + MPMX19_04939 0.74 -0.0
402,949 + MPMX19_04939 0.74 -0.2
402,949 + MPMX19_04939 0.74 -0.6
402,949 + MPMX19_04939 0.74 +1.4
402,950 - MPMX19_04939 0.74 +0.4
403,362 + -1.1
403,362 + -1.8
403,362 + -0.6
403,362 + -2.4
403,362 + -1.6
403,363 - -0.5
403,363 - -0.6
403,363 - -1.8
403,363 - -0.8
403,363 - -1.9
403,363 - +0.3
403,363 - -0.6
403,363 - -1.6
403,401 + -1.2
403,464 + MPMX19_04940 0.11 -0.4
403,464 + MPMX19_04940 0.11 -0.8
403,464 + MPMX19_04940 0.11 +0.6
403,465 - MPMX19_04940 0.11 -1.2
403,465 - MPMX19_04940 0.11 -1.4
403,465 - MPMX19_04940 0.11 -0.2
403,465 - MPMX19_04940 0.11 -0.6
403,683 + MPMX19_04940 0.25 -1.2
403,683 + MPMX19_04940 0.25 -0.9
403,683 + MPMX19_04940 0.25 +0.4
403,683 + MPMX19_04940 0.25 +0.0
403,683 + MPMX19_04940 0.25 -0.4
403,683 + MPMX19_04940 0.25 -0.7
403,683 + MPMX19_04940 0.25 -1.0
403,683 + MPMX19_04940 0.25 -1.4
403,684 - MPMX19_04940 0.25 -1.6
403,684 - MPMX19_04940 0.25 -0.8
403,684 - MPMX19_04940 0.25 -1.3
403,684 - MPMX19_04940 0.25 -1.7
403,684 - MPMX19_04940 0.25 +0.4
403,684 - MPMX19_04940 0.25 -1.9
404,148 + MPMX19_04940 0.55 +1.0
404,148 + MPMX19_04940 0.55 -1.6
404,149 - MPMX19_04940 0.55 -0.2
404,149 - MPMX19_04940 0.55 -0.8
404,149 - MPMX19_04940 0.55 -0.6
404,627 + MPMX19_04940 0.86 -1.2
404,628 - MPMX19_04940 0.86 +0.6
404,628 - MPMX19_04940 0.86 +1.4
404,629 + MPMX19_04940 0.86 -0.2
404,630 - MPMX19_04940 0.86 -1.5
404,630 - MPMX19_04940 0.86 -0.8
404,630 - MPMX19_04940 0.86 -1.4
404,630 - MPMX19_04940 0.86 -0.3
404,733 + +1.0
404,733 + -1.8
404,734 - -0.7
404,748 + -1.5
404,749 - -0.4
404,749 - +0.6
404,990 + MPMX19_04941 0.19 +0.1
404,990 + MPMX19_04941 0.19 -1.0
404,990 + MPMX19_04941 0.19 -1.2
404,990 + MPMX19_04941 0.19 -0.4
404,991 - MPMX19_04941 0.19 -1.7
404,991 - MPMX19_04941 0.19 -0.0
404,991 - MPMX19_04941 0.19 -0.8
405,035 + MPMX19_04941 0.24 -1.0
405,035 + MPMX19_04941 0.24 -0.8
405,036 - MPMX19_04941 0.24 -0.8
405,044 + MPMX19_04941 0.25 -2.8
405,045 - MPMX19_04941 0.25 -0.4
405,045 - MPMX19_04941 0.25 -1.7
405,045 - MPMX19_04941 0.25 +0.2
405,045 - MPMX19_04941 0.25 -0.8
405,045 - MPMX19_04941 0.25 -0.2
405,045 - MPMX19_04941 0.25 -0.6
405,086 + MPMX19_04941 0.31 -0.6
405,200 + MPMX19_04941 0.44 +0.7
405,200 + MPMX19_04941 0.44 -0.9
405,201 - MPMX19_04941 0.45 +0.5
405,213 - MPMX19_04941 0.46 -0.8
405,213 - MPMX19_04941 0.46 +1.2
405,275 + MPMX19_04941 0.54 +0.1
405,275 + MPMX19_04941 0.54 -1.5
405,275 + MPMX19_04941 0.54 +0.2
405,275 + MPMX19_04941 0.54 -0.7
405,276 - MPMX19_04941 0.54 +0.5
405,276 - MPMX19_04941 0.54 -0.9
405,276 - MPMX19_04941 0.54 +0.2
405,276 - MPMX19_04941 0.54 -0.8
405,276 - MPMX19_04941 0.54 +0.3
405,276 - MPMX19_04941 0.54 -0.2
405,276 - MPMX19_04941 0.54 +0.6
405,276 - MPMX19_04941 0.54 +0.4
405,276 - MPMX19_04941 0.54 -1.2
405,276 - MPMX19_04941 0.54 -0.9
405,276 - MPMX19_04941 0.54 -1.5
405,276 - MPMX19_04941 0.54 -1.8
405,276 - MPMX19_04941 0.54 -0.6
405,276 - MPMX19_04941 0.54 -1.8
405,276 - MPMX19_04941 0.54 -1.8
405,276 - MPMX19_04941 0.54 -0.6
405,276 - MPMX19_04941 0.54 -0.3
405,480 - MPMX19_04941 0.79 -1.0
405,536 + MPMX19_04941 0.86 -0.8
405,536 + MPMX19_04941 0.86 -0.1
405,536 + MPMX19_04941 0.86 +0.6
405,536 + MPMX19_04941 0.86 -2.1
405,537 - MPMX19_04941 0.86 -0.5
405,537 - MPMX19_04941 0.86 -0.7
405,537 - MPMX19_04941 0.86 -0.4
405,537 - MPMX19_04941 0.86 -0.0
405,653 + +0.6
405,653 + -0.2
405,653 + -0.5
405,654 - -0.2
405,654 - -0.6
405,833 + MPMX19_04942 0.12 -0.5

Or see this region's nucleotide sequence