Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04916

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04915 and MPMX19_04916 are separated by 169 nucleotidesMPMX19_04916 and MPMX19_04917 are separated by 136 nucleotides MPMX19_04915: MPMX19_04915 - Riboflavin transporter, at 371,246 to 372,148 _04915 MPMX19_04916: MPMX19_04916 - DNA-binding transcriptional activator DecR, at 372,318 to 372,797 _04916 MPMX19_04917: MPMX19_04917 - Alcohol dehydrogenase, at 372,934 to 373,974 _04917 Position (kb) 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.835 kb on + strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.836 kb on - strand, within MPMX19_04915at 371.866 kb on - strand, within MPMX19_04915at 371.866 kb on - strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.880 kb on + strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 371.881 kb on - strand, within MPMX19_04915at 372.218 kb on + strandat 372.218 kb on + strandat 372.442 kb on + strand, within MPMX19_04916at 372.442 kb on + strand, within MPMX19_04916at 372.442 kb on + strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.640 kb on + strand, within MPMX19_04916at 372.640 kb on + strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.783 kb on - strandat 372.783 kb on - strandat 372.783 kb on - strandat 372.846 kb on + strandat 372.846 kb on + strandat 372.846 kb on + strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.900 kb on - strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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371,418 + MPMX19_04915 0.19 +0.8
371,418 + MPMX19_04915 0.19 -0.1
371,418 + MPMX19_04915 0.19 -0.9
371,418 + MPMX19_04915 0.19 +0.6
371,418 + MPMX19_04915 0.19 -0.2
371,418 + MPMX19_04915 0.19 -0.2
371,418 + MPMX19_04915 0.19 +0.6
371,418 + MPMX19_04915 0.19 -0.9
371,418 + MPMX19_04915 0.19 +1.4
371,418 + MPMX19_04915 0.19 -0.6
371,418 + MPMX19_04915 0.19 -0.4
371,418 + MPMX19_04915 0.19 +1.4
371,418 + MPMX19_04915 0.19 +0.0
371,418 + MPMX19_04915 0.19 -0.4
371,419 - MPMX19_04915 0.19 -0.6
371,419 - MPMX19_04915 0.19 -1.2
371,419 - MPMX19_04915 0.19 -2.0
371,419 - MPMX19_04915 0.19 -0.8
371,419 - MPMX19_04915 0.19 +0.0
371,419 - MPMX19_04915 0.19 -0.5
371,419 - MPMX19_04915 0.19 -1.9
371,419 - MPMX19_04915 0.19 +0.8
371,419 - MPMX19_04915 0.19 +0.9
371,419 - MPMX19_04915 0.19 -0.8
371,419 - MPMX19_04915 0.19 -1.4
371,419 - MPMX19_04915 0.19 -0.6
371,419 - MPMX19_04915 0.19 -1.1
371,419 - MPMX19_04915 0.19 -0.4
371,419 - MPMX19_04915 0.19 -0.2
371,419 - MPMX19_04915 0.19 -0.0
371,835 + MPMX19_04915 0.65 -1.2
371,835 + MPMX19_04915 0.65 -1.1
371,835 + MPMX19_04915 0.65 +1.5
371,835 + MPMX19_04915 0.65 +1.2
371,835 + MPMX19_04915 0.65 -0.5
371,835 + MPMX19_04915 0.65 +0.9
371,835 + MPMX19_04915 0.65 +0.2
371,835 + MPMX19_04915 0.65 -0.6
371,835 + MPMX19_04915 0.65 -0.2
371,835 + MPMX19_04915 0.65 -0.6
371,835 + MPMX19_04915 0.65 -0.5
371,835 + MPMX19_04915 0.65 -0.4
371,835 + MPMX19_04915 0.65 +1.4
371,835 + MPMX19_04915 0.65 -0.4
371,835 + MPMX19_04915 0.65 -0.7
371,835 + MPMX19_04915 0.65 -0.2
371,835 + MPMX19_04915 0.65 -1.2
371,835 + MPMX19_04915 0.65 +0.0
371,835 + MPMX19_04915 0.65 -0.4
371,835 + MPMX19_04915 0.65 -1.0
371,835 + MPMX19_04915 0.65 -1.0
371,835 + MPMX19_04915 0.65 +0.9
371,836 - MPMX19_04915 0.65 -1.1
371,836 - MPMX19_04915 0.65 +0.2
371,836 - MPMX19_04915 0.65 -2.4
371,836 - MPMX19_04915 0.65 +0.0
371,836 - MPMX19_04915 0.65 -0.9
371,836 - MPMX19_04915 0.65 -0.7
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 +1.9
371,836 - MPMX19_04915 0.65 +0.5
371,836 - MPMX19_04915 0.65 -0.1
371,836 - MPMX19_04915 0.65 +0.5
371,836 - MPMX19_04915 0.65 -0.3
371,836 - MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 +0.3
371,836 - MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 +0.7
371,836 - MPMX19_04915 0.65 +0.2
371,836 - MPMX19_04915 0.65 -0.4
371,836 - MPMX19_04915 0.65 -0.8
371,836 - MPMX19_04915 0.65 -1.3
371,836 - MPMX19_04915 0.65 -1.8
371,836 - MPMX19_04915 0.65 +0.4
371,836 - MPMX19_04915 0.65 +0.6
371,836 - MPMX19_04915 0.65 -0.1
371,836 - MPMX19_04915 0.65 -0.6
371,836 - MPMX19_04915 0.65 -0.4
371,836 - MPMX19_04915 0.65 -1.4
371,836 - MPMX19_04915 0.65 +1.9
371,836 - MPMX19_04915 0.65 -0.6
371,866 - MPMX19_04915 0.69 -0.6
371,866 - MPMX19_04915 0.69 -0.4
371,880 + MPMX19_04915 0.70 -0.6
371,880 + MPMX19_04915 0.70 -0.4
371,880 + MPMX19_04915 0.70 -1.0
371,881 - MPMX19_04915 0.70 +1.2
371,881 - MPMX19_04915 0.70 +0.4
371,881 - MPMX19_04915 0.70 -0.5
372,218 + +0.9
372,218 + -0.2
372,442 + MPMX19_04916 0.26 -0.2
372,442 + MPMX19_04916 0.26 -1.2
372,442 + MPMX19_04916 0.26 -0.1
372,443 - MPMX19_04916 0.26 +1.1
372,443 - MPMX19_04916 0.26 +1.3
372,443 - MPMX19_04916 0.26 -0.7
372,640 + MPMX19_04916 0.67 +0.4
372,640 + MPMX19_04916 0.67 -1.6
372,641 - MPMX19_04916 0.67 -0.9
372,641 - MPMX19_04916 0.67 -0.8
372,641 - MPMX19_04916 0.67 +0.8
372,783 - -1.4
372,783 - +0.1
372,783 - -1.1
372,846 + -1.4
372,846 + -1.9
372,846 + +0.2
372,847 - -0.5
372,847 - +0.9
372,847 - +1.4
372,847 - -1.1
372,847 - -1.5
372,900 - -1.0
372,949 + +1.5
372,949 + +1.5
372,949 + -0.7
372,949 + -0.1
372,949 + -0.1
372,949 + -2.1
372,950 - -1.2
372,950 - -1.4
372,950 - +0.1
372,950 - -0.2
372,950 - -0.4
372,950 - +0.8
373,294 + MPMX19_04917 0.35 +0.2
373,294 + MPMX19_04917 0.35 +0.1
373,294 + MPMX19_04917 0.35 -0.9
373,294 + MPMX19_04917 0.35 -0.3
373,294 + MPMX19_04917 0.35 -0.8
373,295 - MPMX19_04917 0.35 +0.9
373,295 - MPMX19_04917 0.35 -1.2
373,295 - MPMX19_04917 0.35 -2.2
373,295 - MPMX19_04917 0.35 -1.4
373,295 - MPMX19_04917 0.35 -0.1
373,295 - MPMX19_04917 0.35 -0.8
373,295 - MPMX19_04917 0.35 -0.8
373,295 - MPMX19_04917 0.35 -0.9
373,295 - MPMX19_04917 0.35 +1.6
373,295 - MPMX19_04917 0.35 +0.9
373,295 - MPMX19_04917 0.35 -1.2
373,295 - MPMX19_04917 0.35 -0.6

Or see this region's nucleotide sequence