Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04889 and MPMX19_04890 are separated by 132 nucleotides MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides MPMX19_04891 and MPMX19_04892 are separated by 209 nucleotides
MPMX19_04889: MPMX19_04889 - Chromosome partition protein Smc, at 336,522 to 339,983
_04889
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
MPMX19_04892: MPMX19_04892 - Adenine DNA glycosylase, at 341,528 to 342,586
_04892
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.003 kb on + strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.004 kb on - strand at 340.004 kb on - strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.200 kb on - strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.409 kb on - strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 341.389 kb on + strand at 341.389 kb on + strand at 341.390 kb on - strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.573 kb on + strand at 341.634 kb on - strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.243 kb on - strand, within MPMX19_04892
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 340,003 + -0.8 340,003 + +0.9 340,003 + -1.1 340,004 - -1.1 340,004 - -1.1 340,104 + -1.8 340,104 + +0.2 340,104 + -1.5 340,105 - -0.2 340,105 - +1.2 340,105 - -0.2 340,105 - -0.9 340,105 - -0.9 340,105 - +0.1 340,117 + -1.0 340,117 + -0.1 340,117 + -2.0 340,117 + +0.5 340,117 + -0.6 340,117 + -1.4 340,117 + -0.9 340,118 - -2.4 340,118 - +0.1 340,118 - +1.6 340,118 - -1.8 340,118 - -0.9 340,118 - -0.6 340,118 - +0.3 340,118 - +0.1 340,118 - -2.3 340,118 - -1.0 340,118 - -1.4 340,118 - -2.8 340,118 - -1.9 340,118 - -0.4 340,118 - +0.1 340,118 - -0.1 340,200 - MPMX19_04890 0.13 -0.6 340,225 + MPMX19_04890 0.16 -1.4 340,225 + MPMX19_04890 0.16 -1.6 340,225 + MPMX19_04890 0.16 -1.2 340,225 + MPMX19_04890 0.16 -1.0 340,226 - MPMX19_04890 0.17 -0.7 340,226 - MPMX19_04890 0.17 +0.7 340,226 - MPMX19_04890 0.17 -1.4 340,226 - MPMX19_04890 0.17 +0.5 340,226 - MPMX19_04890 0.17 -0.1 340,226 - MPMX19_04890 0.17 -1.1 340,409 - MPMX19_04890 0.44 -0.9 340,411 + MPMX19_04890 0.44 +0.6 340,411 + MPMX19_04890 0.44 -1.0 340,411 + MPMX19_04890 0.44 +0.6 340,412 - MPMX19_04890 0.45 -0.9 340,412 - MPMX19_04890 0.45 -0.6 340,513 + MPMX19_04890 0.60 -1.4 340,513 + MPMX19_04890 0.60 -0.6 340,513 + MPMX19_04890 0.60 +0.4 340,514 - MPMX19_04890 0.60 +1.1 340,514 - MPMX19_04890 0.60 -1.1 340,514 - MPMX19_04890 0.60 +0.1 340,514 - MPMX19_04890 0.60 -0.1 340,514 - MPMX19_04890 0.60 +0.9 340,514 - MPMX19_04890 0.60 -0.4 340,583 - MPMX19_04890 0.70 +1.8 340,750 + -0.9 340,751 - -1.1 340,793 + +1.2 340,794 - -0.4 340,794 - +0.4 340,808 + +0.1 340,808 + -0.8 340,808 + -0.5 340,808 + -1.9 340,808 + +0.7 340,808 + -1.0 340,808 + -0.3 340,808 + -1.4 340,808 + +0.0 340,808 + -1.4 340,808 + -0.2 340,808 + +0.7 340,809 - -0.6 340,809 - -1.1 340,809 - -0.9 340,809 - +1.1 340,809 - -0.9 340,809 - +0.6 340,809 - -0.5 340,809 - +0.6 340,809 - -0.8 340,809 - -0.9 340,809 - +1.9 340,809 - -0.9 340,809 - +0.1 340,809 - -0.2 340,810 + -1.2 340,810 + +0.2 340,811 - -1.5 340,811 - -0.2 340,811 - +0.5 340,811 - -1.9 340,811 - -0.6 340,811 - -0.2 340,811 - +1.5 340,811 - -0.4 340,811 - -1.9 340,811 - +0.6 340,822 + -0.1 340,822 + -1.4 340,822 + -0.4 340,822 + +0.0 340,822 + -0.1 340,823 - +0.1 340,823 - -1.8 340,823 - -0.6 340,823 - +0.0 340,823 - +0.6 341,389 + -1.8 341,389 + +0.1 341,390 - -0.6 341,514 + -0.9 341,515 - -1.5 341,515 - -0.8 341,515 - -0.2 341,515 - +0.0 341,515 - +0.4 341,515 - +0.0 341,515 - +0.0 341,515 - -0.9 341,515 - +0.9 341,515 - -0.2 341,573 + -1.5 341,634 - MPMX19_04892 0.10 -0.2 341,693 + MPMX19_04892 0.16 +0.0 341,693 + MPMX19_04892 0.16 -0.1 341,693 + MPMX19_04892 0.16 -0.8 341,693 + MPMX19_04892 0.16 -0.4 341,694 - MPMX19_04892 0.16 -0.3 341,694 - MPMX19_04892 0.16 +0.1 341,694 - MPMX19_04892 0.16 -0.9 341,694 - MPMX19_04892 0.16 +0.4 341,694 - MPMX19_04892 0.16 +1.2 341,694 - MPMX19_04892 0.16 +0.1 341,694 - MPMX19_04892 0.16 +0.1 341,787 - MPMX19_04892 0.24 +0.8 341,787 - MPMX19_04892 0.24 +0.8 341,789 + MPMX19_04892 0.25 +0.0 341,789 + MPMX19_04892 0.25 -1.9 341,789 + MPMX19_04892 0.25 +1.5 341,789 + MPMX19_04892 0.25 -1.5 341,789 + MPMX19_04892 0.25 +1.2 341,790 - MPMX19_04892 0.25 +1.9 341,790 - MPMX19_04892 0.25 +0.0 341,790 - MPMX19_04892 0.25 +0.4 341,900 + MPMX19_04892 0.35 -0.4 341,900 + MPMX19_04892 0.35 -1.5 341,900 + MPMX19_04892 0.35 +1.7 341,900 + MPMX19_04892 0.35 +0.2 341,900 + MPMX19_04892 0.35 -0.8 341,901 - MPMX19_04892 0.35 -1.2 341,901 - MPMX19_04892 0.35 +0.3 341,901 - MPMX19_04892 0.35 +0.0 341,901 - MPMX19_04892 0.35 +0.4 342,027 + MPMX19_04892 0.47 -0.3 342,027 + MPMX19_04892 0.47 -0.6 342,027 + MPMX19_04892 0.47 +0.0 342,027 + MPMX19_04892 0.47 -0.9 342,027 + MPMX19_04892 0.47 -0.3 342,028 - MPMX19_04892 0.47 +0.4 342,028 - MPMX19_04892 0.47 -0.9 342,028 - MPMX19_04892 0.47 +0.5 342,074 + MPMX19_04892 0.52 -0.4 342,074 + MPMX19_04892 0.52 -0.2 342,074 + MPMX19_04892 0.52 -0.4 342,074 + MPMX19_04892 0.52 +0.5 342,074 + MPMX19_04892 0.52 +1.5 342,074 + MPMX19_04892 0.52 -0.5 342,074 + MPMX19_04892 0.52 -0.4 342,074 + MPMX19_04892 0.52 -0.3 342,075 - MPMX19_04892 0.52 +0.4 342,075 - MPMX19_04892 0.52 -0.4 342,075 - MPMX19_04892 0.52 -1.1 342,075 - MPMX19_04892 0.52 -0.6 342,155 + MPMX19_04892 0.59 +0.9 342,155 + MPMX19_04892 0.59 +0.5 342,155 + MPMX19_04892 0.59 -1.2 342,156 - MPMX19_04892 0.59 -1.6 342,156 - MPMX19_04892 0.59 -0.6 342,242 + MPMX19_04892 0.67 -0.6 342,242 + MPMX19_04892 0.67 -0.9 342,243 - MPMX19_04892 0.68 -1.9
Or see this region's nucleotide sequence