Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04876

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04874 and MPMX19_04875 are separated by 26 nucleotidesMPMX19_04875 and MPMX19_04876 overlap by 4 nucleotidesMPMX19_04876 and MPMX19_04877 overlap by 4 nucleotides MPMX19_04874: MPMX19_04874 - hypothetical protein, at 318,080 to 318,454 _04874 MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428 _04875 MPMX19_04876: MPMX19_04876 - hypothetical protein, at 319,425 to 320,213 _04876 MPMX19_04877: MPMX19_04877 - hypothetical protein, at 320,210 to 322,096 _04877 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2at 319.051 kb on + strand, within MPMX19_04875at 319.051 kb on + strand, within MPMX19_04875at 319.051 kb on + strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.207 kb on + strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.208 kb on - strand, within MPMX19_04875at 319.282 kb on - strand, within MPMX19_04875at 319.581 kb on + strand, within MPMX19_04876at 319.581 kb on + strand, within MPMX19_04876at 319.581 kb on + strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.896 kb on - strand, within MPMX19_04876at 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.574 kb on + strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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319,051 + MPMX19_04875 0.60 +0.6
319,051 + MPMX19_04875 0.60 -0.6
319,051 + MPMX19_04875 0.60 -0.6
319,052 - MPMX19_04875 0.60 +0.9
319,052 - MPMX19_04875 0.60 -1.6
319,052 - MPMX19_04875 0.60 -0.9
319,207 + MPMX19_04875 0.77 -0.6
319,207 + MPMX19_04875 0.77 +0.1
319,207 + MPMX19_04875 0.77 -2.2
319,207 + MPMX19_04875 0.77 -1.4
319,207 + MPMX19_04875 0.77 +0.1
319,207 + MPMX19_04875 0.77 -1.2
319,207 + MPMX19_04875 0.77 +0.1
319,207 + MPMX19_04875 0.77 -2.6
319,207 + MPMX19_04875 0.77 -1.5
319,207 + MPMX19_04875 0.77 -0.4
319,207 + MPMX19_04875 0.77 +0.4
319,208 - MPMX19_04875 0.77 +0.2
319,208 - MPMX19_04875 0.77 -1.1
319,208 - MPMX19_04875 0.77 +0.9
319,208 - MPMX19_04875 0.77 -0.4
319,208 - MPMX19_04875 0.77 -0.9
319,208 - MPMX19_04875 0.77 -0.4
319,208 - MPMX19_04875 0.77 -0.6
319,208 - MPMX19_04875 0.77 -0.1
319,208 - MPMX19_04875 0.77 -0.4
319,208 - MPMX19_04875 0.77 +0.1
319,208 - MPMX19_04875 0.77 -2.1
319,208 - MPMX19_04875 0.77 -1.2
319,208 - MPMX19_04875 0.77 -0.3
319,208 - MPMX19_04875 0.77 -0.9
319,208 - MPMX19_04875 0.77 -1.1
319,208 - MPMX19_04875 0.77 -0.1
319,208 - MPMX19_04875 0.77 -0.2
319,282 - MPMX19_04875 0.84 -1.4
319,581 + MPMX19_04876 0.20 +2.3
319,581 + MPMX19_04876 0.20 -0.1
319,581 + MPMX19_04876 0.20 -0.6
319,582 - MPMX19_04876 0.20 +0.6
319,582 - MPMX19_04876 0.20 -2.6
319,582 - MPMX19_04876 0.20 +1.1
319,582 - MPMX19_04876 0.20 -0.9
319,582 - MPMX19_04876 0.20 +0.9
319,582 - MPMX19_04876 0.20 +0.0
319,861 + MPMX19_04876 0.55 +0.2
319,861 + MPMX19_04876 0.55 +0.2
319,861 + MPMX19_04876 0.55 -2.1
319,861 + MPMX19_04876 0.55 -0.5
319,861 + MPMX19_04876 0.55 +0.9
319,861 + MPMX19_04876 0.55 -0.2
319,861 + MPMX19_04876 0.55 -0.4
319,861 + MPMX19_04876 0.55 -0.1
319,862 - MPMX19_04876 0.55 -1.6
319,862 - MPMX19_04876 0.55 -0.4
319,862 - MPMX19_04876 0.55 -2.0
319,862 - MPMX19_04876 0.55 -0.4
319,862 - MPMX19_04876 0.55 -0.6
319,862 - MPMX19_04876 0.55 -0.5
319,862 - MPMX19_04876 0.55 +1.9
319,862 - MPMX19_04876 0.55 -0.8
319,862 - MPMX19_04876 0.55 -0.2
319,896 - MPMX19_04876 0.60 +2.5
320,166 + -0.5
320,166 + -0.5
320,166 + -0.9
320,166 + -0.1
320,166 + -2.6
320,166 + -0.2
320,166 + -0.1
320,166 + -2.1
320,167 - +0.1
320,167 - -1.6
320,167 - -1.8
320,167 - -0.2
320,211 + -0.1
320,211 + +0.5
320,211 + -0.2
320,211 + -1.1
320,211 + +1.1
320,211 + -0.7
320,212 - -0.1
320,212 - -0.6
320,212 - -1.5
320,212 - -0.7
320,212 - +0.1
320,574 + MPMX19_04877 0.19 -0.5
320,575 - MPMX19_04877 0.19 -0.4
320,575 - MPMX19_04877 0.19 +1.1
320,575 - MPMX19_04877 0.19 +1.4
320,575 - MPMX19_04877 0.19 +0.6
320,871 + MPMX19_04877 0.35 -1.9
320,871 + MPMX19_04877 0.35 -0.9
320,871 + MPMX19_04877 0.35 +0.5
320,871 + MPMX19_04877 0.35 +1.5
320,871 + MPMX19_04877 0.35 +1.4
320,872 - MPMX19_04877 0.35 -0.6
320,872 - MPMX19_04877 0.35 +0.8
320,872 - MPMX19_04877 0.35 -0.4
320,872 - MPMX19_04877 0.35 -0.1
320,872 - MPMX19_04877 0.35 -1.0
320,872 - MPMX19_04877 0.35 -1.1
321,072 + MPMX19_04877 0.46 -1.6
321,072 + MPMX19_04877 0.46 -0.3
321,072 + MPMX19_04877 0.46 -0.3
321,073 - MPMX19_04877 0.46 -1.6
321,073 - MPMX19_04877 0.46 -0.4
321,073 - MPMX19_04877 0.46 +0.0
321,073 - MPMX19_04877 0.46 +2.3
321,073 - MPMX19_04877 0.46 -0.4
321,073 - MPMX19_04877 0.46 +0.1
321,073 - MPMX19_04877 0.46 +0.1

Or see this region's nucleotide sequence