Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04871 and MPMX19_04872 are separated by 461 nucleotides MPMX19_04872 and MPMX19_04873 are separated by 19 nucleotides MPMX19_04873 and MPMX19_04874 are separated by 20 nucleotides MPMX19_04874 and MPMX19_04875 are separated by 26 nucleotides
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
MPMX19_04872: MPMX19_04872 - hypothetical protein, at 315,773 to 317,494
_04872
MPMX19_04873: MPMX19_04873 - hypothetical protein, at 317,514 to 318,059
_04873
MPMX19_04874: MPMX19_04874 - hypothetical protein, at 318,080 to 318,454
_04874
MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428
_04875
Position (kb) 315
316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871 at 315.368 kb on + strand at 315.368 kb on + strand at 315.368 kb on + strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.457 kb on + strand at 315.457 kb on + strand at 315.458 kb on - strand at 315.458 kb on - strand at 315.501 kb on + strand at 315.501 kb on + strand at 315.502 kb on - strand at 315.502 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.585 kb on + strand at 315.585 kb on + strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.667 kb on + strand at 315.685 kb on + strand at 315.686 kb on - strand at 315.806 kb on + strand at 315.806 kb on + strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.446 kb on - strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.532 kb on + strand, within MPMX19_04872 at 316.533 kb on - strand, within MPMX19_04872 at 316.533 kb on - strand, within MPMX19_04872 at 316.637 kb on + strand, within MPMX19_04872 at 316.638 kb on - strand, within MPMX19_04872 at 316.638 kb on - strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.207 kb on + strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.208 kb on - strand, within MPMX19_04872 at 317.510 kb on + strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.511 kb on - strand at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.688 kb on + strand, within MPMX19_04873 at 317.689 kb on + strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.689 kb on - strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.718 kb on + strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.719 kb on - strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.799 kb on + strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.800 kb on - strand, within MPMX19_04873 at 317.893 kb on + strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.894 kb on - strand, within MPMX19_04873 at 317.904 kb on + strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 317.905 kb on - strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.000 kb on + strand, within MPMX19_04873 at 318.001 kb on - strand, within MPMX19_04873 at 318.027 kb on + strand at 318.027 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.055 kb on + strand at 318.056 kb on - strand at 318.057 kb on + strand at 318.073 kb on - strand at 318.073 kb on - strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.078 kb on + strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.079 kb on - strand at 318.171 kb on - strand, within MPMX19_04874 at 318.194 kb on + strand, within MPMX19_04874 at 318.195 kb on - strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.224 kb on + strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.225 kb on - strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.272 kb on + strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.273 kb on - strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.368 kb on + strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874 at 318.369 kb on - strand, within MPMX19_04874
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 314,923 + MPMX19_04871 0.56 -2.0 314,932 + MPMX19_04871 0.57 +0.2 314,932 + MPMX19_04871 0.57 -0.6 314,932 + MPMX19_04871 0.57 -0.9 314,932 + MPMX19_04871 0.57 -0.9 314,932 + MPMX19_04871 0.57 -1.2 314,932 + MPMX19_04871 0.57 -0.3 314,932 + MPMX19_04871 0.57 -1.2 314,932 + MPMX19_04871 0.57 -2.3 314,933 - MPMX19_04871 0.57 +1.3 314,933 - MPMX19_04871 0.57 +1.2 314,933 - MPMX19_04871 0.57 -1.1 314,933 - MPMX19_04871 0.57 -1.6 314,933 - MPMX19_04871 0.57 +0.0 314,933 - MPMX19_04871 0.57 +1.1 314,933 - MPMX19_04871 0.57 -1.5 314,933 - MPMX19_04871 0.57 -1.6 314,933 - MPMX19_04871 0.57 -0.4 314,933 - MPMX19_04871 0.57 +1.2 315,046 + MPMX19_04871 0.70 -1.4 315,368 + -0.9 315,368 + +0.2 315,368 + +1.1 315,369 - -1.5 315,369 - -1.3 315,369 - +1.4 315,378 + -1.6 315,378 + -0.3 315,378 + +0.5 315,378 + +0.4 315,378 + -0.4 315,378 + +0.1 315,379 - -0.7 315,379 - -0.2 315,379 - +0.2 315,379 - +0.4 315,379 - -0.1 315,379 - -1.9 315,457 + -2.6 315,457 + -0.4 315,458 - -0.1 315,458 - +0.1 315,501 + -1.0 315,501 + -0.9 315,502 - -0.9 315,502 - +0.0 315,536 - -1.4 315,536 - +0.1 315,536 - +0.1 315,536 - +0.4 315,536 - -0.8 315,536 - -2.0 315,557 - +0.0 315,557 - -0.9 315,557 - +1.1 315,585 + -0.8 315,585 + +0.2 315,592 - -0.4 315,592 - -1.1 315,592 - -0.8 315,592 - -1.5 315,667 + -1.4 315,685 + -0.1 315,686 - -1.9 315,806 + -0.1 315,806 + -0.5 315,807 - -0.2 315,807 - -1.6 315,807 - +0.4 315,808 + +0.8 315,808 + -0.1 315,808 + -2.4 315,808 + -1.1 315,809 - +1.2 315,809 - -1.6 315,809 - -1.5 315,809 - -0.9 315,809 - +0.4 315,809 - +0.4 315,809 - +0.2 315,809 - +3.7 316,271 + MPMX19_04872 0.29 +0.9 316,271 + MPMX19_04872 0.29 -2.5 316,271 + MPMX19_04872 0.29 +0.9 316,271 + MPMX19_04872 0.29 -0.6 316,271 + MPMX19_04872 0.29 +0.4 316,271 + MPMX19_04872 0.29 -2.0 316,271 + MPMX19_04872 0.29 -0.8 316,271 + MPMX19_04872 0.29 +0.0 316,271 + MPMX19_04872 0.29 +0.0 316,272 - MPMX19_04872 0.29 -1.0 316,272 - MPMX19_04872 0.29 +0.2 316,272 - MPMX19_04872 0.29 -1.0 316,446 - MPMX19_04872 0.39 -1.5 316,446 - MPMX19_04872 0.39 -1.5 316,446 - MPMX19_04872 0.39 +0.4 316,532 + MPMX19_04872 0.44 +0.3 316,532 + MPMX19_04872 0.44 -0.7 316,532 + MPMX19_04872 0.44 +0.8 316,532 + MPMX19_04872 0.44 +0.1 316,532 + MPMX19_04872 0.44 -0.2 316,532 + MPMX19_04872 0.44 -0.1 316,532 + MPMX19_04872 0.44 -1.0 316,532 + MPMX19_04872 0.44 -0.8 316,533 - MPMX19_04872 0.44 -0.4 316,533 - MPMX19_04872 0.44 -0.5 316,637 + MPMX19_04872 0.50 -1.6 316,638 - MPMX19_04872 0.50 -0.6 316,638 - MPMX19_04872 0.50 -0.9 317,207 + MPMX19_04872 0.83 +0.1 317,207 + MPMX19_04872 0.83 +0.5 317,207 + MPMX19_04872 0.83 -0.6 317,207 + MPMX19_04872 0.83 +0.8 317,207 + MPMX19_04872 0.83 -0.3 317,208 - MPMX19_04872 0.83 +0.1 317,208 - MPMX19_04872 0.83 +0.1 317,208 - MPMX19_04872 0.83 +0.7 317,208 - MPMX19_04872 0.83 -0.4 317,208 - MPMX19_04872 0.83 -0.7 317,208 - MPMX19_04872 0.83 -0.4 317,208 - MPMX19_04872 0.83 +0.4 317,208 - MPMX19_04872 0.83 -0.3 317,510 + -1.8 317,511 - -0.4 317,511 - -2.2 317,511 - +0.4 317,511 - -0.9 317,688 + MPMX19_04873 0.32 -0.8 317,688 + MPMX19_04873 0.32 -0.5 317,688 + MPMX19_04873 0.32 -1.3 317,688 + MPMX19_04873 0.32 -1.4 317,688 + MPMX19_04873 0.32 -2.0 317,688 + MPMX19_04873 0.32 -2.1 317,688 + MPMX19_04873 0.32 -0.9 317,689 + MPMX19_04873 0.32 -1.8 317,689 - MPMX19_04873 0.32 +0.1 317,689 - MPMX19_04873 0.32 -2.0 317,689 - MPMX19_04873 0.32 -0.3 317,689 - MPMX19_04873 0.32 -0.1 317,718 + MPMX19_04873 0.37 -0.4 317,718 + MPMX19_04873 0.37 -1.1 317,718 + MPMX19_04873 0.37 -0.7 317,718 + MPMX19_04873 0.37 -0.2 317,718 + MPMX19_04873 0.37 -1.2 317,718 + MPMX19_04873 0.37 +1.2 317,719 - MPMX19_04873 0.38 -0.5 317,719 - MPMX19_04873 0.38 +0.8 317,719 - MPMX19_04873 0.38 +0.8 317,719 - MPMX19_04873 0.38 +0.5 317,719 - MPMX19_04873 0.38 -1.0 317,719 - MPMX19_04873 0.38 +0.6 317,719 - MPMX19_04873 0.38 -0.4 317,799 + MPMX19_04873 0.52 +1.6 317,799 + MPMX19_04873 0.52 -1.5 317,799 + MPMX19_04873 0.52 -1.0 317,799 + MPMX19_04873 0.52 +1.9 317,799 + MPMX19_04873 0.52 -0.1 317,799 + MPMX19_04873 0.52 +0.4 317,799 + MPMX19_04873 0.52 +0.2 317,799 + MPMX19_04873 0.52 +0.2 317,799 + MPMX19_04873 0.52 -0.9 317,799 + MPMX19_04873 0.52 -1.5 317,800 - MPMX19_04873 0.52 -0.3 317,800 - MPMX19_04873 0.52 +1.8 317,800 - MPMX19_04873 0.52 +0.8 317,800 - MPMX19_04873 0.52 +0.1 317,800 - MPMX19_04873 0.52 -1.6 317,800 - MPMX19_04873 0.52 -0.4 317,800 - MPMX19_04873 0.52 -0.1 317,800 - MPMX19_04873 0.52 +0.3 317,800 - MPMX19_04873 0.52 -0.6 317,800 - MPMX19_04873 0.52 -1.5 317,800 - MPMX19_04873 0.52 +0.3 317,893 + MPMX19_04873 0.69 -0.8 317,894 - MPMX19_04873 0.70 -0.6 317,894 - MPMX19_04873 0.70 -1.2 317,894 - MPMX19_04873 0.70 +0.4 317,904 + MPMX19_04873 0.71 -2.5 317,905 - MPMX19_04873 0.72 +0.5 317,905 - MPMX19_04873 0.72 +0.4 317,905 - MPMX19_04873 0.72 -0.1 317,905 - MPMX19_04873 0.72 -1.0 317,905 - MPMX19_04873 0.72 -0.2 317,905 - MPMX19_04873 0.72 -0.1 318,000 + MPMX19_04873 0.89 -3.2 318,000 + MPMX19_04873 0.89 -0.2 318,000 + MPMX19_04873 0.89 -1.6 318,000 + MPMX19_04873 0.89 +0.4 318,001 - MPMX19_04873 0.89 +1.3 318,027 + +0.0 318,027 + -1.3 318,055 + -0.9 318,055 + -0.5 318,055 + -1.2 318,055 + -0.8 318,056 - +0.9 318,057 + -0.7 318,073 - -0.1 318,073 - -0.9 318,078 + +0.1 318,078 + +0.4 318,078 + -0.1 318,078 + -0.7 318,078 + -0.3 318,078 + -0.1 318,078 + -0.9 318,079 - +0.2 318,079 - -0.2 318,079 - +0.4 318,079 - -2.0 318,079 - -1.1 318,079 - +0.4 318,171 - MPMX19_04874 0.24 -1.6 318,194 + MPMX19_04874 0.30 +0.9 318,195 - MPMX19_04874 0.31 -0.3 318,224 + MPMX19_04874 0.38 +0.6 318,224 + MPMX19_04874 0.38 +0.9 318,224 + MPMX19_04874 0.38 -1.1 318,225 - MPMX19_04874 0.39 +0.7 318,225 - MPMX19_04874 0.39 -0.4 318,225 - MPMX19_04874 0.39 +0.1 318,225 - MPMX19_04874 0.39 -0.6 318,225 - MPMX19_04874 0.39 -0.6 318,225 - MPMX19_04874 0.39 -1.8 318,272 + MPMX19_04874 0.51 -1.6 318,272 + MPMX19_04874 0.51 -1.4 318,272 + MPMX19_04874 0.51 -0.1 318,272 + MPMX19_04874 0.51 -1.1 318,272 + MPMX19_04874 0.51 -1.6 318,272 + MPMX19_04874 0.51 -0.4 318,273 - MPMX19_04874 0.51 -0.4 318,273 - MPMX19_04874 0.51 -0.1 318,273 - MPMX19_04874 0.51 -1.4 318,368 + MPMX19_04874 0.77 -0.2 318,368 + MPMX19_04874 0.77 +1.5 318,368 + MPMX19_04874 0.77 -0.8 318,369 - MPMX19_04874 0.77 -0.1 318,369 - MPMX19_04874 0.77 +0.9 318,369 - MPMX19_04874 0.77 -0.1 318,369 - MPMX19_04874 0.77 -0.4 318,369 - MPMX19_04874 0.77 +0.9
Or see this region's nucleotide sequence