Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04861

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04860 and MPMX19_04861 are separated by 130 nucleotidesMPMX19_04861 and MPMX19_04862 are separated by 272 nucleotides MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538 _04860 MPMX19_04861: MPMX19_04861 - hypothetical protein, at 299,669 to 299,932 _04861 MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752 _04862 Position (kb) 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 299.278 kb on + strand, within MPMX19_04860at 299.279 kb on - strand, within MPMX19_04860at 299.279 kb on - strand, within MPMX19_04860at 299.294 kb on - strand, within MPMX19_04860at 299.362 kb on + strand, within MPMX19_04860at 299.362 kb on + strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.485 kb on + strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.662 kb on + strandat 299.663 kb on - strandat 299.663 kb on - strandat 299.673 kb on + strandat 299.769 kb on + strand, within MPMX19_04861at 299.769 kb on + strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.970 kb on + strandat 299.970 kb on + strandat 299.970 kb on + strandat 299.979 kb on + strandat 299.980 kb on - strandat 299.980 kb on - strandat 299.980 kb on - strandat 299.980 kb on - strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.139 kb on + strandat 300.139 kb on + strandat 300.139 kb on + strandat 300.140 kb on - strandat 300.164 kb on + strandat 300.165 kb on - strandat 300.165 kb on - strandat 300.168 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
298,672 + MPMX19_04860 0.34 +0.4
298,672 + MPMX19_04860 0.34 -1.2
298,672 + MPMX19_04860 0.34 -0.2
298,672 + MPMX19_04860 0.34 +0.7
298,672 + MPMX19_04860 0.34 -0.9
298,672 + MPMX19_04860 0.34 -0.1
298,672 + MPMX19_04860 0.34 -1.2
298,673 - MPMX19_04860 0.35 -0.2
298,673 - MPMX19_04860 0.35 -0.5
298,673 - MPMX19_04860 0.35 +1.1
298,673 - MPMX19_04860 0.35 -1.2
298,673 - MPMX19_04860 0.35 -0.4
298,673 - MPMX19_04860 0.35 +0.5
298,673 - MPMX19_04860 0.35 -0.2
298,673 - MPMX19_04860 0.35 -1.8
298,673 - MPMX19_04860 0.35 +0.8
298,673 - MPMX19_04860 0.35 -1.1
298,756 + MPMX19_04860 0.41 -0.4
298,756 + MPMX19_04860 0.41 -1.3
298,756 + MPMX19_04860 0.41 +0.1
298,756 + MPMX19_04860 0.41 -2.2
298,756 + MPMX19_04860 0.41 -0.2
298,756 + MPMX19_04860 0.41 +0.8
298,756 + MPMX19_04860 0.41 -0.2
298,756 + MPMX19_04860 0.41 -0.9
298,756 + MPMX19_04860 0.41 +0.6
298,756 + MPMX19_04860 0.41 -1.8
298,756 + MPMX19_04860 0.41 +0.8
298,756 + MPMX19_04860 0.41 -1.1
298,756 + MPMX19_04860 0.41 +0.4
298,757 - MPMX19_04860 0.41 -2.0
298,757 - MPMX19_04860 0.41 -2.0
298,757 - MPMX19_04860 0.41 -0.4
298,757 - MPMX19_04860 0.41 +0.1
298,757 - MPMX19_04860 0.41 -1.6
298,757 - MPMX19_04860 0.41 +0.1
298,757 - MPMX19_04860 0.41 +1.1
298,757 - MPMX19_04860 0.41 +0.3
298,757 - MPMX19_04860 0.41 -2.5
298,757 - MPMX19_04860 0.41 -3.0
298,757 - MPMX19_04860 0.41 -1.6
298,757 - MPMX19_04860 0.41 -0.2
299,278 + MPMX19_04860 0.80 +0.4
299,279 - MPMX19_04860 0.80 +0.6
299,279 - MPMX19_04860 0.80 +0.6
299,294 - MPMX19_04860 0.81 +0.7
299,362 + MPMX19_04860 0.87 -0.4
299,362 + MPMX19_04860 0.87 -1.5
299,363 - MPMX19_04860 0.87 -0.8
299,363 - MPMX19_04860 0.87 -0.8
299,363 - MPMX19_04860 0.87 +0.1
299,363 - MPMX19_04860 0.87 -0.9
299,365 + MPMX19_04860 0.87 -0.9
299,365 + MPMX19_04860 0.87 -0.4
299,365 + MPMX19_04860 0.87 +1.8
299,365 + MPMX19_04860 0.87 -0.7
299,365 + MPMX19_04860 0.87 -0.3
299,365 + MPMX19_04860 0.87 -1.4
299,365 + MPMX19_04860 0.87 -1.3
299,365 + MPMX19_04860 0.87 -0.3
299,365 + MPMX19_04860 0.87 -1.2
299,365 + MPMX19_04860 0.87 +0.8
299,365 + MPMX19_04860 0.87 -1.1
299,365 + MPMX19_04860 0.87 -1.5
299,366 - MPMX19_04860 0.87 -0.0
299,366 - MPMX19_04860 0.87 -0.7
299,366 - MPMX19_04860 0.87 -1.6
299,366 - MPMX19_04860 0.87 +0.6
299,366 - MPMX19_04860 0.87 -2.4
299,366 - MPMX19_04860 0.87 -2.4
299,366 - MPMX19_04860 0.87 +0.2
299,366 - MPMX19_04860 0.87 +0.6
299,366 - MPMX19_04860 0.87 -0.9
299,366 - MPMX19_04860 0.87 -0.1
299,366 - MPMX19_04860 0.87 -0.8
299,366 - MPMX19_04860 0.87 -0.7
299,485 + -0.3
299,486 - -0.9
299,486 - +0.6
299,486 - -0.3
299,486 - +1.5
299,486 - -0.3
299,503 + +0.8
299,503 + -1.4
299,503 + -0.3
299,503 + +0.9
299,503 + -0.4
299,503 + +0.2
299,503 + +0.8
299,504 - +1.9
299,504 - -0.1
299,504 - +0.4
299,504 - -0.3
299,504 - -0.7
299,504 - +0.6
299,504 - +0.1
299,504 - -0.1
299,662 + +1.4
299,663 - -0.6
299,663 - +0.2
299,673 + -0.9
299,769 + MPMX19_04861 0.38 -0.5
299,769 + MPMX19_04861 0.38 -0.5
299,770 - MPMX19_04861 0.38 -1.0
299,770 - MPMX19_04861 0.38 -2.3
299,770 - MPMX19_04861 0.38 -1.1
299,970 + -1.4
299,970 + -1.7
299,970 + -1.4
299,979 + +0.1
299,980 - -1.1
299,980 - -0.5
299,980 - -0.1
299,980 - -1.0
300,127 + +1.1
300,127 + -0.1
300,127 + -0.5
300,127 + -1.2
300,127 + +0.9
300,128 - +0.1
300,128 - -2.6
300,128 - -0.2
300,128 - +0.6
300,128 - +0.2
300,139 + +0.7
300,139 + +0.5
300,139 + -0.5
300,140 - +0.2
300,164 + -0.8
300,165 - -0.0
300,165 - -1.9
300,168 + +0.5

Or see this region's nucleotide sequence