Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04746

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04745 and MPMX19_04746 are separated by 192 nucleotidesMPMX19_04746 and MPMX19_04747 are separated by 4 nucleotidesMPMX19_04747 and MPMX19_04748 overlap by 4 nucleotides MPMX19_04745: MPMX19_04745 - HTH-type transcriptional regulator CdhR, at 137,103 to 138,122 _04745 MPMX19_04746: MPMX19_04746 - hypothetical protein, at 138,315 to 138,812 _04746 MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518 _04747 MPMX19_04748: MPMX19_04748 - hypothetical protein, at 139,515 to 140,084 _04748 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.383 kb on - strand, within MPMX19_04745at 137.383 kb on - strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.886 kb on + strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.887 kb on - strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.910 kb on + strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.911 kb on - strand, within MPMX19_04745at 137.913 kb on + strand, within MPMX19_04745at 137.913 kb on + strand, within MPMX19_04745at 137.913 kb on + strand, within MPMX19_04745at 137.914 kb on - strand, within MPMX19_04745at 138.240 kb on - strandat 138.240 kb on - strandat 138.244 kb on + strandat 138.244 kb on + strandat 138.244 kb on + strandat 138.244 kb on + strandat 138.245 kb on - strandat 138.245 kb on - strandat 138.319 kb on + strandat 138.320 kb on - strandat 138.320 kb on - strandat 138.320 kb on - strandat 138.320 kb on - strandat 138.399 kb on + strand, within MPMX19_04746at 138.453 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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137,382 + MPMX19_04745 0.27 -0.5
137,382 + MPMX19_04745 0.27 +0.9
137,382 + MPMX19_04745 0.27 +0.8
137,382 + MPMX19_04745 0.27 -1.4
137,383 - MPMX19_04745 0.27 +1.1
137,383 - MPMX19_04745 0.27 -0.4
137,886 + MPMX19_04745 0.77 -2.0
137,886 + MPMX19_04745 0.77 -0.4
137,886 + MPMX19_04745 0.77 -0.2
137,886 + MPMX19_04745 0.77 -0.7
137,886 + MPMX19_04745 0.77 +0.0
137,886 + MPMX19_04745 0.77 -0.1
137,886 + MPMX19_04745 0.77 -0.3
137,886 + MPMX19_04745 0.77 -0.3
137,886 + MPMX19_04745 0.77 -2.2
137,886 + MPMX19_04745 0.77 -1.7
137,886 + MPMX19_04745 0.77 -2.0
137,887 - MPMX19_04745 0.77 -0.2
137,887 - MPMX19_04745 0.77 -0.8
137,887 - MPMX19_04745 0.77 -0.8
137,887 - MPMX19_04745 0.77 +0.6
137,887 - MPMX19_04745 0.77 +0.4
137,887 - MPMX19_04745 0.77 +1.3
137,887 - MPMX19_04745 0.77 +0.9
137,887 - MPMX19_04745 0.77 -1.1
137,887 - MPMX19_04745 0.77 -0.9
137,887 - MPMX19_04745 0.77 +0.7
137,887 - MPMX19_04745 0.77 -0.7
137,887 - MPMX19_04745 0.77 -0.4
137,887 - MPMX19_04745 0.77 -0.3
137,887 - MPMX19_04745 0.77 +0.0
137,910 + MPMX19_04745 0.79 -0.4
137,910 + MPMX19_04745 0.79 -0.5
137,910 + MPMX19_04745 0.79 -0.8
137,910 + MPMX19_04745 0.79 +0.2
137,910 + MPMX19_04745 0.79 -1.1
137,910 + MPMX19_04745 0.79 -1.5
137,910 + MPMX19_04745 0.79 +0.0
137,910 + MPMX19_04745 0.79 +0.1
137,911 - MPMX19_04745 0.79 +1.3
137,911 - MPMX19_04745 0.79 +0.1
137,911 - MPMX19_04745 0.79 +0.3
137,911 - MPMX19_04745 0.79 -1.1
137,911 - MPMX19_04745 0.79 -0.1
137,911 - MPMX19_04745 0.79 +1.3
137,911 - MPMX19_04745 0.79 -0.2
137,911 - MPMX19_04745 0.79 -1.5
137,911 - MPMX19_04745 0.79 -0.9
137,913 + MPMX19_04745 0.79 -1.1
137,913 + MPMX19_04745 0.79 -1.1
137,913 + MPMX19_04745 0.79 +0.3
137,914 - MPMX19_04745 0.80 +0.3
138,240 - -0.1
138,240 - +0.9
138,244 + -0.7
138,244 + -0.8
138,244 + +1.6
138,244 + -0.9
138,245 - +1.3
138,245 - -0.4
138,319 + +1.2
138,320 - -0.7
138,320 - +0.0
138,320 - -0.4
138,320 - +0.9
138,399 + MPMX19_04746 0.17 -0.9
138,453 + MPMX19_04746 0.28 +0.3
138,544 + MPMX19_04746 0.46 -1.8
138,544 + MPMX19_04746 0.46 -2.0
138,544 + MPMX19_04746 0.46 -1.5
138,544 + MPMX19_04746 0.46 -0.1
138,544 + MPMX19_04746 0.46 -0.9
138,544 + MPMX19_04746 0.46 -0.2
138,544 + MPMX19_04746 0.46 -0.4
138,544 + MPMX19_04746 0.46 -0.4
138,545 - MPMX19_04746 0.46 +0.2
138,545 - MPMX19_04746 0.46 -0.1
138,545 - MPMX19_04746 0.46 +1.2
138,545 - MPMX19_04746 0.46 -1.3
138,545 - MPMX19_04746 0.46 +1.3
138,545 - MPMX19_04746 0.46 +0.7
138,545 - MPMX19_04746 0.46 +1.5
138,545 - MPMX19_04746 0.46 +0.2
138,545 - MPMX19_04746 0.46 -0.2
138,545 - MPMX19_04746 0.46 -0.7
138,545 - MPMX19_04746 0.46 +0.6
138,552 + MPMX19_04746 0.48 +0.5
138,552 + MPMX19_04746 0.48 -1.2
138,552 + MPMX19_04746 0.48 +0.1
138,553 - MPMX19_04746 0.48 -1.1
138,553 - MPMX19_04746 0.48 -2.0
138,553 - MPMX19_04746 0.48 -0.5
138,699 + MPMX19_04746 0.77 -1.2
138,699 + MPMX19_04746 0.77 -0.6
138,699 + MPMX19_04746 0.77 -0.1
138,699 + MPMX19_04746 0.77 -0.4
138,699 + MPMX19_04746 0.77 -1.2
138,699 + MPMX19_04746 0.77 -0.9
138,699 + MPMX19_04746 0.77 -0.2
138,699 + MPMX19_04746 0.77 +0.1
138,699 + MPMX19_04746 0.77 -1.1
138,700 - MPMX19_04746 0.77 -0.9
138,700 - MPMX19_04746 0.77 +0.5
138,700 - MPMX19_04746 0.77 -2.5
138,700 - MPMX19_04746 0.77 +0.1
138,700 - MPMX19_04746 0.77 +0.9
139,581 + MPMX19_04748 0.12 -0.1
139,581 + MPMX19_04748 0.12 +0.2
139,581 + MPMX19_04748 0.12 -1.8
139,581 + MPMX19_04748 0.12 +0.2
139,581 + MPMX19_04748 0.12 +0.5
139,581 + MPMX19_04748 0.12 -0.1
139,581 + MPMX19_04748 0.12 +1.3
139,582 - MPMX19_04748 0.12 -0.9
139,582 - MPMX19_04748 0.12 -2.5
139,582 - MPMX19_04748 0.12 -0.4
139,582 - MPMX19_04748 0.12 +0.9
139,668 + MPMX19_04748 0.27 -0.4
139,668 + MPMX19_04748 0.27 -0.7
139,668 + MPMX19_04748 0.27 -1.2
139,668 + MPMX19_04748 0.27 -0.1
139,668 + MPMX19_04748 0.27 +0.0
139,668 + MPMX19_04748 0.27 +0.3
139,668 + MPMX19_04748 0.27 -1.4
139,668 + MPMX19_04748 0.27 -1.7
139,669 - MPMX19_04748 0.27 -0.9
139,669 - MPMX19_04748 0.27 -0.3
139,752 + MPMX19_04748 0.42 -0.8
139,752 + MPMX19_04748 0.42 -0.1
139,752 + MPMX19_04748 0.42 +0.2
139,752 + MPMX19_04748 0.42 -1.2
139,752 + MPMX19_04748 0.42 +1.7
139,752 + MPMX19_04748 0.42 +0.4
139,752 + MPMX19_04748 0.42 -2.3
139,752 + MPMX19_04748 0.42 -0.6
139,753 - MPMX19_04748 0.42 -0.7
139,753 - MPMX19_04748 0.42 +0.2
139,753 - MPMX19_04748 0.42 -0.6
139,753 - MPMX19_04748 0.42 -0.5
139,753 - MPMX19_04748 0.42 +0.6
139,764 + MPMX19_04748 0.44 +1.3
139,764 + MPMX19_04748 0.44 +1.6
139,764 + MPMX19_04748 0.44 -0.3
139,764 + MPMX19_04748 0.44 +0.6
139,764 + MPMX19_04748 0.44 +0.3
139,765 - MPMX19_04748 0.44 -0.5
139,765 - MPMX19_04748 0.44 -1.2
139,765 - MPMX19_04748 0.44 -0.2

Or see this region's nucleotide sequence