Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04723

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04722 and MPMX19_04723 overlap by 4 nucleotidesMPMX19_04723 and MPMX19_04724 overlap by 8 nucleotidesMPMX19_04724 and MPMX19_04725 are separated by 67 nucleotides MPMX19_04722: MPMX19_04722 - hypothetical protein, at 112,310 to 114,226 _04722 MPMX19_04723: MPMX19_04723 - Protein FixB, at 114,223 to 115,452 _04723 MPMX19_04724: MPMX19_04724 - hypothetical protein, at 115,445 to 116,242 _04724 MPMX19_04725: MPMX19_04725 - Glycine betaine/choline transport system ATP-binding protein OusV, at 116,310 to 117,593 _04725 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1at 113.784 kb on - strand, within MPMX19_04722at 113.909 kb on + strand, within MPMX19_04722at 113.909 kb on + strand, within MPMX19_04722at 113.910 kb on - strand, within MPMX19_04722at 113.910 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 114.404 kb on + strand, within MPMX19_04723at 114.404 kb on + strand, within MPMX19_04723at 114.404 kb on + strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on - strand, within MPMX19_04723at 114.410 kb on - strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.515 kb on - strand, within MPMX19_04723at 114.515 kb on - strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.264 kb on + strand, within MPMX19_04723at 115.265 kb on - strand, within MPMX19_04723at 115.265 kb on - strand, within MPMX19_04723at 115.265 kb on - strand, within MPMX19_04723at 115.265 kb on - strand, within MPMX19_04723at 115.265 kb on - strand, within MPMX19_04723at 115.629 kb on - strand, within MPMX19_04724at 115.629 kb on - strand, within MPMX19_04724at 115.784 kb on + strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.938 kb on + strand, within MPMX19_04724at 115.939 kb on - strand, within MPMX19_04724at 115.939 kb on - strand, within MPMX19_04724at 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.268 kb on + strandat 116.268 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
113,784 - MPMX19_04722 0.77 +0.1
113,909 + MPMX19_04722 0.83 -0.5
113,909 + MPMX19_04722 0.83 -0.8
113,910 - MPMX19_04722 0.83 -0.2
113,910 - MPMX19_04722 0.83 -0.8
113,922 - MPMX19_04722 0.84 -0.7
113,922 - MPMX19_04722 0.84 -1.3
113,922 - MPMX19_04722 0.84 -1.0
114,404 + MPMX19_04723 0.15 -0.4
114,404 + MPMX19_04723 0.15 -1.0
114,404 + MPMX19_04723 0.15 -0.3
114,405 - MPMX19_04723 0.15 +0.5
114,405 - MPMX19_04723 0.15 +0.2
114,405 - MPMX19_04723 0.15 -0.1
114,405 - MPMX19_04723 0.15 +0.3
114,405 - MPMX19_04723 0.15 -1.2
114,405 - MPMX19_04723 0.15 -0.8
114,409 + MPMX19_04723 0.15 -0.4
114,409 + MPMX19_04723 0.15 -1.2
114,409 + MPMX19_04723 0.15 +0.8
114,409 + MPMX19_04723 0.15 +0.3
114,409 - MPMX19_04723 0.15 -0.1
114,410 - MPMX19_04723 0.15 -0.3
114,514 + MPMX19_04723 0.24 -1.2
114,514 + MPMX19_04723 0.24 -0.1
114,514 + MPMX19_04723 0.24 -0.9
114,514 + MPMX19_04723 0.24 -0.1
114,515 - MPMX19_04723 0.24 -0.2
114,515 - MPMX19_04723 0.24 +0.3
114,709 + MPMX19_04723 0.40 +0.2
114,709 + MPMX19_04723 0.40 +0.6
114,709 + MPMX19_04723 0.40 -1.4
114,709 + MPMX19_04723 0.40 -0.9
114,709 + MPMX19_04723 0.40 -0.5
114,710 - MPMX19_04723 0.40 +0.5
114,710 - MPMX19_04723 0.40 +0.3
114,710 - MPMX19_04723 0.40 -0.1
114,710 - MPMX19_04723 0.40 -0.1
114,710 - MPMX19_04723 0.40 +0.9
114,710 - MPMX19_04723 0.40 -0.2
114,710 - MPMX19_04723 0.40 +0.7
114,710 - MPMX19_04723 0.40 +0.0
114,710 - MPMX19_04723 0.40 +0.1
114,710 - MPMX19_04723 0.40 +0.5
114,710 - MPMX19_04723 0.40 +0.7
114,710 - MPMX19_04723 0.40 +1.2
114,710 - MPMX19_04723 0.40 -0.9
115,264 + MPMX19_04723 0.85 +0.8
115,264 + MPMX19_04723 0.85 +0.5
115,264 + MPMX19_04723 0.85 +0.9
115,264 + MPMX19_04723 0.85 +1.7
115,264 + MPMX19_04723 0.85 -1.8
115,264 + MPMX19_04723 0.85 -0.1
115,265 - MPMX19_04723 0.85 +1.7
115,265 - MPMX19_04723 0.85 -0.7
115,265 - MPMX19_04723 0.85 +1.6
115,265 - MPMX19_04723 0.85 +0.4
115,265 - MPMX19_04723 0.85 +0.4
115,629 - MPMX19_04724 0.23 -1.9
115,629 - MPMX19_04724 0.23 -0.7
115,784 + MPMX19_04724 0.42 +0.9
115,785 - MPMX19_04724 0.43 -0.4
115,785 - MPMX19_04724 0.43 +0.6
115,785 - MPMX19_04724 0.43 -0.7
115,785 - MPMX19_04724 0.43 -1.1
115,938 + MPMX19_04724 0.62 -0.4
115,939 - MPMX19_04724 0.62 -2.3
115,939 - MPMX19_04724 0.62 -0.2
116,207 + +0.9
116,207 + -0.5
116,207 + -0.9
116,207 + +0.5
116,207 + -1.2
116,207 + +0.9
116,207 + -0.7
116,208 - -0.4
116,208 - -1.3
116,208 - -2.0
116,208 - -0.2
116,208 - -0.7
116,208 - +1.3
116,208 - +0.2
116,208 - -0.1
116,208 - -1.0
116,208 - -0.8
116,208 - -0.5
116,208 - -0.5
116,208 - +1.3
116,208 - -1.0
116,268 + -0.3
116,268 + +0.6
116,433 + -0.6
116,433 + -1.9
116,433 + -0.5
116,433 + +0.2
116,433 + -0.8
116,434 - -0.1
116,434 - -0.7
116,434 - +0.8
116,434 - -0.2
116,434 - -1.2
116,434 - -1.7
116,434 - -0.6

Or see this region's nucleotide sequence