Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04704

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04703 and MPMX19_04704 are separated by 63 nucleotidesMPMX19_04704 and MPMX19_04705 are separated by 15 nucleotidesMPMX19_04705 and MPMX19_04706 are separated by 11 nucleotides MPMX19_04703: MPMX19_04703 - L-serine dehydratase TdcG, at 88,998 to 90,380 _04703 MPMX19_04704: MPMX19_04704 - Serine hydroxymethyltransferase 2, at 90,444 to 91,718 _04704 MPMX19_04705: MPMX19_04705 - hypothetical protein, at 91,734 to 92,288 _04705 MPMX19_04706: MPMX19_04706 - Sarcosine oxidase subunit alpha, at 92,300 to 95,299 _04706 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.694 kb on - strand, within MPMX19_04703at 89.861 kb on - strand, within MPMX19_04703at 89.947 kb on + strand, within MPMX19_04703at 89.947 kb on + strand, within MPMX19_04703at 89.948 kb on - strand, within MPMX19_04703at 89.948 kb on - strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.413 kb on - strandat 90.451 kb on + strandat 90.451 kb on + strandat 90.451 kb on + strandat 90.452 kb on - strandat 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.816 kb on - strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.100 kb on - strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704at 91.519 kb on + strand, within MPMX19_04704at 91.520 kb on - strand, within MPMX19_04704at 91.520 kb on - strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.523 kb on - strand, within MPMX19_04704at 91.549 kb on + strand, within MPMX19_04704at 91.549 kb on + strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.630 kb on + strandat 91.630 kb on + strandat 91.631 kb on - strandat 92.292 kb on + strandat 92.292 kb on + strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.464 kb on - strandat 92.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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89,464 + MPMX19_04703 0.34 +0.7
89,464 + MPMX19_04703 0.34 +0.4
89,464 + MPMX19_04703 0.34 -0.4
89,464 + MPMX19_04703 0.34 -0.1
89,465 - MPMX19_04703 0.34 -0.0
89,465 - MPMX19_04703 0.34 -1.0
89,465 - MPMX19_04703 0.34 -1.4
89,467 + MPMX19_04703 0.34 +0.0
89,467 + MPMX19_04703 0.34 -0.1
89,468 - MPMX19_04703 0.34 +0.2
89,468 - MPMX19_04703 0.34 -0.5
89,468 - MPMX19_04703 0.34 -1.2
89,468 - MPMX19_04703 0.34 -0.9
89,468 - MPMX19_04703 0.34 +0.0
89,563 + MPMX19_04703 0.41 -0.9
89,563 + MPMX19_04703 0.41 -0.3
89,563 + MPMX19_04703 0.41 -1.2
89,563 + MPMX19_04703 0.41 -0.1
89,564 - MPMX19_04703 0.41 +0.3
89,564 - MPMX19_04703 0.41 -1.2
89,693 + MPMX19_04703 0.50 -0.2
89,693 + MPMX19_04703 0.50 +0.3
89,694 - MPMX19_04703 0.50 -0.7
89,861 - MPMX19_04703 0.62 +0.0
89,947 + MPMX19_04703 0.69 +0.9
89,947 + MPMX19_04703 0.69 -1.2
89,948 - MPMX19_04703 0.69 +0.6
89,948 - MPMX19_04703 0.69 +0.2
90,111 + MPMX19_04703 0.80 +0.0
90,111 + MPMX19_04703 0.80 -1.7
90,111 + MPMX19_04703 0.80 -0.9
90,111 + MPMX19_04703 0.80 -1.1
90,111 + MPMX19_04703 0.80 +0.1
90,111 + MPMX19_04703 0.80 -0.1
90,112 - MPMX19_04703 0.81 -0.4
90,112 - MPMX19_04703 0.81 -1.2
90,112 - MPMX19_04703 0.81 +1.1
90,112 - MPMX19_04703 0.81 +0.7
90,112 - MPMX19_04703 0.81 -0.2
90,112 - MPMX19_04703 0.81 -0.6
90,112 - MPMX19_04703 0.81 -0.4
90,413 - -1.3
90,451 + +0.0
90,451 + +0.9
90,451 + -1.7
90,452 - +0.2
90,815 + MPMX19_04704 0.29 -0.9
90,815 + MPMX19_04704 0.29 +1.9
90,815 + MPMX19_04704 0.29 -1.9
90,816 - MPMX19_04704 0.29 +2.7
90,856 + MPMX19_04704 0.32 -1.9
90,856 + MPMX19_04704 0.32 -0.4
90,856 + MPMX19_04704 0.32 -2.1
90,856 + MPMX19_04704 0.32 -0.3
90,856 + MPMX19_04704 0.32 -1.7
90,856 + MPMX19_04704 0.32 +0.3
90,857 - MPMX19_04704 0.32 -1.0
90,857 - MPMX19_04704 0.32 +0.7
91,099 + MPMX19_04704 0.51 -0.1
91,099 + MPMX19_04704 0.51 -0.2
91,100 - MPMX19_04704 0.51 -0.7
91,123 + MPMX19_04704 0.53 -0.4
91,123 + MPMX19_04704 0.53 +0.1
91,123 + MPMX19_04704 0.53 +0.2
91,124 - MPMX19_04704 0.53 -0.2
91,124 - MPMX19_04704 0.53 -0.2
91,124 - MPMX19_04704 0.53 -1.3
91,124 - MPMX19_04704 0.53 -1.1
91,246 + MPMX19_04704 0.63 -1.7
91,246 + MPMX19_04704 0.63 -1.5
91,246 + MPMX19_04704 0.63 -0.6
91,246 + MPMX19_04704 0.63 +0.0
91,246 + MPMX19_04704 0.63 -0.7
91,246 + MPMX19_04704 0.63 +0.5
91,247 - MPMX19_04704 0.63 -1.2
91,247 - MPMX19_04704 0.63 +0.9
91,247 - MPMX19_04704 0.63 -0.7
91,247 - MPMX19_04704 0.63 +0.1
91,247 - MPMX19_04704 0.63 -0.2
91,279 + MPMX19_04704 0.65 -1.2
91,279 + MPMX19_04704 0.65 -0.4
91,279 + MPMX19_04704 0.65 +1.1
91,280 - MPMX19_04704 0.66 +0.1
91,280 - MPMX19_04704 0.66 -0.7
91,519 + MPMX19_04704 0.84 -0.8
91,520 - MPMX19_04704 0.84 +1.1
91,520 - MPMX19_04704 0.84 -0.2
91,522 + MPMX19_04704 0.85 -1.9
91,522 + MPMX19_04704 0.85 +0.3
91,522 + MPMX19_04704 0.85 -0.9
91,522 + MPMX19_04704 0.85 +0.2
91,522 + MPMX19_04704 0.85 -1.7
91,523 - MPMX19_04704 0.85 -1.7
91,549 + MPMX19_04704 0.87 -0.1
91,549 + MPMX19_04704 0.87 -0.3
91,550 - MPMX19_04704 0.87 +0.1
91,550 - MPMX19_04704 0.87 -0.4
91,550 - MPMX19_04704 0.87 +0.7
91,550 - MPMX19_04704 0.87 -2.2
91,550 - MPMX19_04704 0.87 -0.9
91,550 - MPMX19_04704 0.87 -0.7
91,630 + +0.1
91,630 + +0.0
91,631 - +0.8
92,292 + -0.2
92,292 + -1.1
92,293 - +0.5
92,293 - +0.9
92,293 - +1.3
92,293 - -0.0
92,293 - -0.6
92,293 - -0.1
92,293 - -0.1
92,301 + -2.1
92,301 + +0.9
92,302 - -0.2
92,302 - -0.9
92,302 - -1.0
92,302 - +1.6
92,302 - -0.2
92,463 + +1.6
92,463 + +0.6
92,463 + -0.2
92,463 + -0.4
92,464 - -0.1
92,464 - +0.7

Or see this region's nucleotide sequence