Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04682 and MPMX19_04683 overlap by 4 nucleotides MPMX19_04683 and MPMX19_04684 overlap by 4 nucleotides MPMX19_04684 and MPMX19_04685 are separated by 21 nucleotides
MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607
_04682
MPMX19_04683: MPMX19_04683 - Acylamidase, at 68,604 to 70,010
_04683
MPMX19_04684: MPMX19_04684 - HTH-type transcriptional repressor RspR, at 70,007 to 70,744
_04684
MPMX19_04685: MPMX19_04685 - D-hydantoinase, at 70,766 to 72,202
_04685
Position (kb)
68
69
70
71 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 67.615 kb on + strand, within MPMX19_04682 at 67.616 kb on - strand, within MPMX19_04682 at 67.987 kb on + strand, within MPMX19_04682 at 68.095 kb on + strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 69.210 kb on + strand, within MPMX19_04683 at 69.387 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683 at 70.139 kb on + strand, within MPMX19_04684 at 70.139 kb on + strand, within MPMX19_04684 at 70.139 kb on + strand, within MPMX19_04684 at 70.140 kb on - strand, within MPMX19_04684 at 70.140 kb on - strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.149 kb on + strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.150 kb on - strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.454 kb on + strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.455 kb on - strand, within MPMX19_04684 at 70.562 kb on + strand, within MPMX19_04684 at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.742 kb on + strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.743 kb on - strand at 70.936 kb on - strand, within MPMX19_04685 at 70.944 kb on + strand, within MPMX19_04685 at 70.944 kb on + strand, within MPMX19_04685 at 70.944 kb on + strand, within MPMX19_04685 at 70.944 kb on + strand, within MPMX19_04685 at 70.945 kb on - strand, within MPMX19_04685 at 70.945 kb on - strand, within MPMX19_04685 at 70.945 kb on - strand, within MPMX19_04685 at 70.945 kb on - strand, within MPMX19_04685
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 67,615 + MPMX19_04682 0.17 +0.6 67,616 - MPMX19_04682 0.17 -0.2 67,987 + MPMX19_04682 0.48 -0.2 68,095 + MPMX19_04682 0.57 -1.2 68,096 - MPMX19_04682 0.57 -0.7 68,096 - MPMX19_04682 0.57 -0.1 68,545 + -1.4 68,545 + -1.5 68,545 + +1.9 68,545 + -1.1 68,545 + -0.4 68,546 - -0.3 68,546 - -0.1 68,546 - +1.3 68,546 - -0.4 68,546 - +0.1 69,210 + MPMX19_04683 0.43 -1.6 69,387 + MPMX19_04683 0.56 +0.9 69,567 + MPMX19_04683 0.68 -0.9 69,567 + MPMX19_04683 0.68 -0.7 69,568 - MPMX19_04683 0.69 -0.7 69,568 - MPMX19_04683 0.69 -1.7 70,139 + MPMX19_04684 0.18 -0.4 70,139 + MPMX19_04684 0.18 -0.4 70,139 + MPMX19_04684 0.18 -1.8 70,140 - MPMX19_04684 0.18 -0.3 70,140 - MPMX19_04684 0.18 -1.1 70,149 + MPMX19_04684 0.19 +0.2 70,149 + MPMX19_04684 0.19 +0.2 70,149 + MPMX19_04684 0.19 -1.5 70,149 + MPMX19_04684 0.19 -1.9 70,149 + MPMX19_04684 0.19 -1.4 70,149 + MPMX19_04684 0.19 -0.7 70,149 + MPMX19_04684 0.19 +0.9 70,149 + MPMX19_04684 0.19 -0.7 70,150 - MPMX19_04684 0.19 +1.1 70,150 - MPMX19_04684 0.19 -0.9 70,150 - MPMX19_04684 0.19 -1.4 70,150 - MPMX19_04684 0.19 -0.4 70,150 - MPMX19_04684 0.19 -1.7 70,150 - MPMX19_04684 0.19 -0.3 70,454 + MPMX19_04684 0.61 +0.8 70,454 + MPMX19_04684 0.61 -0.7 70,454 + MPMX19_04684 0.61 -0.1 70,454 + MPMX19_04684 0.61 +0.3 70,454 + MPMX19_04684 0.61 +1.8 70,454 + MPMX19_04684 0.61 +1.2 70,455 - MPMX19_04684 0.61 +0.4 70,455 - MPMX19_04684 0.61 -0.4 70,455 - MPMX19_04684 0.61 +1.3 70,455 - MPMX19_04684 0.61 -1.1 70,455 - MPMX19_04684 0.61 -2.0 70,455 - MPMX19_04684 0.61 -0.9 70,455 - MPMX19_04684 0.61 -1.5 70,562 + MPMX19_04684 0.75 -1.0 70,742 + +0.4 70,742 + -1.5 70,742 + -1.2 70,742 + -0.2 70,742 + +0.7 70,742 + -0.4 70,742 + -0.1 70,742 + -0.6 70,742 + -0.7 70,742 + -0.2 70,743 - +0.9 70,743 - -0.2 70,743 - +1.0 70,743 - -0.2 70,743 - -1.2 70,743 - -0.6 70,743 - -0.8 70,743 - +1.6 70,743 - +0.7 70,743 - +1.1 70,743 - -1.0 70,936 - MPMX19_04685 0.12 +0.9 70,944 + MPMX19_04685 0.12 -1.2 70,944 + MPMX19_04685 0.12 -1.1 70,944 + MPMX19_04685 0.12 -0.5 70,944 + MPMX19_04685 0.12 -0.9 70,945 - MPMX19_04685 0.12 +1.2 70,945 - MPMX19_04685 0.12 +0.5 70,945 - MPMX19_04685 0.12 +0.5 70,945 - MPMX19_04685 0.12 +0.9
Or see this region's nucleotide sequence