Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04650 and MPMX19_04651 are separated by 53 nucleotides MPMX19_04651 and MPMX19_04652 are separated by 2 nucleotides
MPMX19_04650: MPMX19_04650 - Polyphosphate:AMP phosphotransferase, at 35,214 to 36,029
_04650
MPMX19_04651: MPMX19_04651 - 3-isopropylmalate dehydratase small subunit 1, at 36,083 to 36,682
_04651
MPMX19_04652: MPMX19_04652 - 3-isopropylmalate dehydratase large subunit, at 36,685 to 38,106
_04652
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.298 kb on + strand, within MPMX19_04650 at 35.298 kb on + strand, within MPMX19_04650 at 35.298 kb on + strand, within MPMX19_04650 at 35.298 kb on + strand, within MPMX19_04650 at 35.298 kb on + strand, within MPMX19_04650 at 35.299 kb on - strand, within MPMX19_04650 at 35.299 kb on - strand, within MPMX19_04650 at 35.299 kb on - strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.352 kb on + strand, within MPMX19_04650 at 35.353 kb on - strand, within MPMX19_04650 at 35.353 kb on - strand, within MPMX19_04650 at 35.353 kb on - strand, within MPMX19_04650 at 35.353 kb on - strand, within MPMX19_04650 at 35.353 kb on - strand, within MPMX19_04650 at 35.508 kb on + strand, within MPMX19_04650 at 35.508 kb on + strand, within MPMX19_04650 at 35.508 kb on + strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.509 kb on - strand, within MPMX19_04650 at 35.514 kb on + strand, within MPMX19_04650 at 35.514 kb on + strand, within MPMX19_04650 at 35.515 kb on - strand, within MPMX19_04650 at 35.575 kb on - strand, within MPMX19_04650 at 35.575 kb on - strand, within MPMX19_04650 at 35.575 kb on - strand, within MPMX19_04650 at 35.637 kb on + strand, within MPMX19_04650 at 35.637 kb on + strand, within MPMX19_04650 at 35.637 kb on + strand, within MPMX19_04650 at 35.638 kb on - strand, within MPMX19_04650 at 35.638 kb on - strand, within MPMX19_04650 at 35.638 kb on - strand, within MPMX19_04650 at 35.760 kb on + strand, within MPMX19_04650 at 35.760 kb on + strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 36.016 kb on + strand at 36.017 kb on - strand at 36.027 kb on + strand at 36.084 kb on + strand at 36.331 kb on + strand, within MPMX19_04651 at 36.331 kb on + strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.571 kb on - strand, within MPMX19_04651 at 36.706 kb on + strand at 36.706 kb on + strand at 36.706 kb on + strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.494 kb on - strand, within MPMX19_04652
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 35,298 + MPMX19_04650 0.10 -0.9 35,298 + MPMX19_04650 0.10 +0.1 35,298 + MPMX19_04650 0.10 +2.9 35,298 + MPMX19_04650 0.10 +0.7 35,298 + MPMX19_04650 0.10 +0.5 35,299 - MPMX19_04650 0.10 -0.4 35,299 - MPMX19_04650 0.10 -0.1 35,299 - MPMX19_04650 0.10 -0.1 35,352 + MPMX19_04650 0.17 -0.5 35,352 + MPMX19_04650 0.17 +0.7 35,352 + MPMX19_04650 0.17 +0.9 35,352 + MPMX19_04650 0.17 +0.3 35,352 + MPMX19_04650 0.17 +1.2 35,352 + MPMX19_04650 0.17 -0.1 35,353 - MPMX19_04650 0.17 -0.9 35,353 - MPMX19_04650 0.17 +0.2 35,353 - MPMX19_04650 0.17 -0.4 35,353 - MPMX19_04650 0.17 -2.2 35,353 - MPMX19_04650 0.17 +0.7 35,508 + MPMX19_04650 0.36 -1.2 35,508 + MPMX19_04650 0.36 +0.1 35,508 + MPMX19_04650 0.36 +0.6 35,509 - MPMX19_04650 0.36 +1.9 35,509 - MPMX19_04650 0.36 +0.5 35,509 - MPMX19_04650 0.36 -0.1 35,509 - MPMX19_04650 0.36 -0.4 35,509 - MPMX19_04650 0.36 -0.7 35,509 - MPMX19_04650 0.36 -1.2 35,514 + MPMX19_04650 0.37 -0.3 35,514 + MPMX19_04650 0.37 -0.1 35,515 - MPMX19_04650 0.37 +0.1 35,575 - MPMX19_04650 0.44 +1.5 35,575 - MPMX19_04650 0.44 +1.9 35,575 - MPMX19_04650 0.44 +0.1 35,637 + MPMX19_04650 0.52 -1.2 35,637 + MPMX19_04650 0.52 -0.2 35,637 + MPMX19_04650 0.52 +1.9 35,638 - MPMX19_04650 0.52 -1.3 35,638 - MPMX19_04650 0.52 -0.9 35,638 - MPMX19_04650 0.52 -0.1 35,760 + MPMX19_04650 0.67 -0.3 35,760 + MPMX19_04650 0.67 +0.2 35,761 - MPMX19_04650 0.67 -0.4 35,761 - MPMX19_04650 0.67 +0.5 35,761 - MPMX19_04650 0.67 +0.6 35,761 - MPMX19_04650 0.67 -0.1 35,817 + MPMX19_04650 0.74 -0.1 35,817 + MPMX19_04650 0.74 +0.9 35,817 + MPMX19_04650 0.74 -1.1 35,817 + MPMX19_04650 0.74 +1.6 35,817 + MPMX19_04650 0.74 +0.0 35,817 + MPMX19_04650 0.74 -0.3 35,817 + MPMX19_04650 0.74 -0.9 35,817 + MPMX19_04650 0.74 -0.2 35,817 + MPMX19_04650 0.74 -0.4 35,817 + MPMX19_04650 0.74 -0.2 35,818 - MPMX19_04650 0.74 -0.8 35,818 - MPMX19_04650 0.74 -0.9 35,818 - MPMX19_04650 0.74 +0.3 35,818 - MPMX19_04650 0.74 -0.5 35,818 - MPMX19_04650 0.74 +0.5 36,016 + -1.3 36,017 - +0.9 36,027 + -0.6 36,084 + +0.4 36,331 + MPMX19_04651 0.41 -1.2 36,331 + MPMX19_04651 0.41 +0.5 36,332 - MPMX19_04651 0.41 -1.2 36,332 - MPMX19_04651 0.41 +0.8 36,388 + MPMX19_04651 0.51 -1.1 36,388 + MPMX19_04651 0.51 -0.6 36,389 - MPMX19_04651 0.51 -1.8 36,389 - MPMX19_04651 0.51 -1.2 36,441 + MPMX19_04651 0.60 -0.7 36,441 + MPMX19_04651 0.60 +0.4 36,441 + MPMX19_04651 0.60 -0.4 36,441 + MPMX19_04651 0.60 -1.7 36,441 + MPMX19_04651 0.60 +0.3 36,441 + MPMX19_04651 0.60 -0.3 36,441 + MPMX19_04651 0.60 -1.2 36,441 + MPMX19_04651 0.60 +0.3 36,441 + MPMX19_04651 0.60 -0.9 36,442 - MPMX19_04651 0.60 -0.5 36,442 - MPMX19_04651 0.60 -1.6 36,442 - MPMX19_04651 0.60 -1.1 36,442 - MPMX19_04651 0.60 +0.1 36,442 - MPMX19_04651 0.60 +0.1 36,442 - MPMX19_04651 0.60 -0.6 36,442 - MPMX19_04651 0.60 -2.0 36,510 + MPMX19_04651 0.71 -0.7 36,510 + MPMX19_04651 0.71 -0.4 36,510 + MPMX19_04651 0.71 +0.4 36,510 + MPMX19_04651 0.71 +0.0 36,510 + MPMX19_04651 0.71 +0.2 36,510 + MPMX19_04651 0.71 -0.7 36,510 + MPMX19_04651 0.71 -1.2 36,511 - MPMX19_04651 0.71 -0.4 36,511 - MPMX19_04651 0.71 -0.2 36,511 - MPMX19_04651 0.71 -1.1 36,511 - MPMX19_04651 0.71 +0.4 36,511 - MPMX19_04651 0.71 -1.1 36,511 - MPMX19_04651 0.71 +1.1 36,511 - MPMX19_04651 0.71 -0.2 36,511 - MPMX19_04651 0.71 -1.0 36,511 - MPMX19_04651 0.71 -0.7 36,511 - MPMX19_04651 0.71 -1.4 36,571 - MPMX19_04651 0.81 -0.9 36,706 + -0.0 36,706 + -0.5 36,706 + -0.3 36,707 - -2.5 36,707 - -0.7 36,707 - -0.4 36,707 - +0.3 36,707 - +1.1 36,707 - -1.5 36,707 - -0.7 37,127 + MPMX19_04652 0.31 +1.1 37,127 + MPMX19_04652 0.31 -0.1 37,127 + MPMX19_04652 0.31 -2.1 37,127 + MPMX19_04652 0.31 -0.8 37,127 + MPMX19_04652 0.31 -0.8 37,127 + MPMX19_04652 0.31 -0.9 37,127 + MPMX19_04652 0.31 -0.2 37,127 + MPMX19_04652 0.31 -0.5 37,127 + MPMX19_04652 0.31 -0.9 37,127 + MPMX19_04652 0.31 -1.5 37,127 + MPMX19_04652 0.31 -0.5 37,127 + MPMX19_04652 0.31 -0.7 37,128 - MPMX19_04652 0.31 +0.2 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 +0.6 37,128 - MPMX19_04652 0.31 +0.3 37,128 - MPMX19_04652 0.31 +1.0 37,128 - MPMX19_04652 0.31 -0.3 37,128 - MPMX19_04652 0.31 -1.7 37,128 - MPMX19_04652 0.31 -0.1 37,128 - MPMX19_04652 0.31 +1.9 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 -0.5 37,128 - MPMX19_04652 0.31 -0.9 37,128 - MPMX19_04652 0.31 -1.3 37,128 - MPMX19_04652 0.31 -2.2 37,494 - MPMX19_04652 0.57 -1.0
Or see this region's nucleotide sequence