Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04608

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04606 and MPMX19_04607 are separated by 24 nucleotidesMPMX19_04607 and MPMX19_04608 are separated by 37 nucleotidesMPMX19_04608 and MPMX19_04609 are separated by 17 nucleotidesMPMX19_04609 and MPMX19_04610 overlap by 4 nucleotides MPMX19_04606: MPMX19_04606 - Long-chain-alcohol dehydrogenase 1, at 991,982 to 993,136 _04606 MPMX19_04607: MPMX19_04607 - hypothetical protein, at 993,161 to 993,607 _04607 MPMX19_04608: MPMX19_04608 - 3-ketoacyl-CoA thiolase, at 993,645 to 994,847 _04608 MPMX19_04609: MPMX19_04609 - Putative short-chain type dehydrogenase/reductase, at 994,865 to 995,800 _04609 MPMX19_04610: MPMX19_04610 - putative enoyl-CoA hydratase 1, at 995,797 to 996,279 _04610 Position (kb) 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 992.775 kb on + strand, within MPMX19_04606at 992.775 kb on + strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.780 kb on - strand, within MPMX19_04606at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.319 kb on - strand, within MPMX19_04607at 993.394 kb on - strand, within MPMX19_04607at 993.394 kb on - strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.471 kb on + strand, within MPMX19_04607at 993.472 kb on - strand, within MPMX19_04607at 993.472 kb on - strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.504 kb on + strand, within MPMX19_04607at 993.504 kb on + strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.528 kb on + strand, within MPMX19_04607at 993.528 kb on + strand, within MPMX19_04607at 993.576 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.775 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 994.214 kb on + strand, within MPMX19_04608at 994.214 kb on + strand, within MPMX19_04608at 994.214 kb on + strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.339 kb on + strand, within MPMX19_04608at 994.340 kb on - strand, within MPMX19_04608at 994.369 kb on + strand, within MPMX19_04608at 994.370 kb on - strand, within MPMX19_04608at 994.370 kb on - strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.796 kb on - strandat 994.828 kb on - strandat 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.343 kb on + strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.703 kb on + strand, within MPMX19_04609

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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992,775 + MPMX19_04606 0.69 -0.9
992,775 + MPMX19_04606 0.69 -0.4
992,776 - MPMX19_04606 0.69 +0.3
992,776 - MPMX19_04606 0.69 -0.2
992,776 - MPMX19_04606 0.69 +0.4
992,776 - MPMX19_04606 0.69 -0.3
992,776 - MPMX19_04606 0.69 +0.7
992,779 + MPMX19_04606 0.69 +0.1
992,779 + MPMX19_04606 0.69 -2.5
992,779 + MPMX19_04606 0.69 +2.0
992,779 + MPMX19_04606 0.69 -0.4
992,780 - MPMX19_04606 0.69 +1.2
993,252 + MPMX19_04607 0.20 +1.0
993,252 + MPMX19_04607 0.20 +0.5
993,252 + MPMX19_04607 0.20 -1.9
993,252 + MPMX19_04607 0.20 +0.5
993,253 - MPMX19_04607 0.21 +0.7
993,253 - MPMX19_04607 0.21 -0.9
993,253 - MPMX19_04607 0.21 -2.2
993,253 - MPMX19_04607 0.21 +0.0
993,253 - MPMX19_04607 0.21 -2.8
993,253 - MPMX19_04607 0.21 -0.4
993,253 - MPMX19_04607 0.21 +0.3
993,253 - MPMX19_04607 0.21 +0.4
993,253 - MPMX19_04607 0.21 -0.6
993,319 - MPMX19_04607 0.35 -0.6
993,394 - MPMX19_04607 0.52 -0.4
993,394 - MPMX19_04607 0.52 +0.2
993,396 + MPMX19_04607 0.53 -0.6
993,396 + MPMX19_04607 0.53 +0.4
993,396 + MPMX19_04607 0.53 +1.0
993,396 + MPMX19_04607 0.53 -1.1
993,397 - MPMX19_04607 0.53 -1.1
993,397 - MPMX19_04607 0.53 -1.9
993,397 - MPMX19_04607 0.53 +0.0
993,397 - MPMX19_04607 0.53 +0.2
993,397 - MPMX19_04607 0.53 +0.4
993,397 - MPMX19_04607 0.53 -0.4
993,397 - MPMX19_04607 0.53 -1.7
993,397 - MPMX19_04607 0.53 +2.0
993,471 + MPMX19_04607 0.69 -0.9
993,472 - MPMX19_04607 0.70 +1.4
993,472 - MPMX19_04607 0.70 +1.4
993,495 + MPMX19_04607 0.75 -0.2
993,495 + MPMX19_04607 0.75 +0.0
993,495 + MPMX19_04607 0.75 -1.4
993,495 + MPMX19_04607 0.75 -1.1
993,495 + MPMX19_04607 0.75 +1.2
993,495 + MPMX19_04607 0.75 +0.6
993,495 + MPMX19_04607 0.75 +0.2
993,495 + MPMX19_04607 0.75 -2.3
993,495 + MPMX19_04607 0.75 -0.5
993,495 + MPMX19_04607 0.75 -0.3
993,495 + MPMX19_04607 0.75 -1.1
993,495 + MPMX19_04607 0.75 -0.5
993,496 - MPMX19_04607 0.75 +1.3
993,496 - MPMX19_04607 0.75 -0.8
993,496 - MPMX19_04607 0.75 -0.1
993,496 - MPMX19_04607 0.75 +2.7
993,496 - MPMX19_04607 0.75 +0.4
993,496 - MPMX19_04607 0.75 -0.6
993,496 - MPMX19_04607 0.75 -0.1
993,501 + MPMX19_04607 0.76 +0.0
993,501 + MPMX19_04607 0.76 -0.4
993,501 + MPMX19_04607 0.76 -1.4
993,501 + MPMX19_04607 0.76 +0.9
993,502 - MPMX19_04607 0.76 -1.1
993,502 - MPMX19_04607 0.76 -0.5
993,502 - MPMX19_04607 0.76 +0.8
993,504 + MPMX19_04607 0.77 +0.5
993,504 + MPMX19_04607 0.77 +0.2
993,505 - MPMX19_04607 0.77 -1.8
993,505 - MPMX19_04607 0.77 -1.0
993,505 - MPMX19_04607 0.77 -1.0
993,528 + MPMX19_04607 0.82 -1.2
993,528 + MPMX19_04607 0.82 -0.2
993,576 + -0.8
993,695 + -0.8
993,695 + -1.2
993,695 + -1.7
993,695 + -0.6
993,695 + -0.6
993,695 + -0.2
993,696 - -0.9
993,696 - -1.1
993,696 - +0.2
993,696 - -1.3
993,696 - -1.0
993,696 - -1.4
993,696 - +0.6
993,696 - -0.8
993,696 - -0.4
993,775 + MPMX19_04608 0.11 -0.3
993,855 + MPMX19_04608 0.17 -1.4
993,855 + MPMX19_04608 0.17 +0.1
993,855 + MPMX19_04608 0.17 +0.3
993,856 - MPMX19_04608 0.18 -0.3
993,856 - MPMX19_04608 0.18 -0.6
993,856 - MPMX19_04608 0.18 -0.2
993,856 - MPMX19_04608 0.18 -1.0
993,856 - MPMX19_04608 0.18 -1.3
993,856 - MPMX19_04608 0.18 -0.8
993,856 - MPMX19_04608 0.18 -1.0
994,214 + MPMX19_04608 0.47 -0.7
994,214 + MPMX19_04608 0.47 -1.3
994,214 + MPMX19_04608 0.47 +0.4
994,215 - MPMX19_04608 0.47 +0.1
994,215 - MPMX19_04608 0.47 -0.3
994,215 - MPMX19_04608 0.47 +0.0
994,215 - MPMX19_04608 0.47 +0.6
994,215 - MPMX19_04608 0.47 -0.5
994,215 - MPMX19_04608 0.47 -1.4
994,215 - MPMX19_04608 0.47 -0.1
994,339 + MPMX19_04608 0.58 +0.2
994,340 - MPMX19_04608 0.58 +0.1
994,369 + MPMX19_04608 0.60 +0.0
994,370 - MPMX19_04608 0.60 -1.8
994,370 - MPMX19_04608 0.60 -0.3
994,411 + MPMX19_04608 0.64 -1.0
994,411 + MPMX19_04608 0.64 +0.6
994,411 + MPMX19_04608 0.64 +0.7
994,411 + MPMX19_04608 0.64 -0.4
994,411 + MPMX19_04608 0.64 -1.1
994,411 + MPMX19_04608 0.64 +0.4
994,411 + MPMX19_04608 0.64 -0.8
994,411 + MPMX19_04608 0.64 -0.4
994,411 + MPMX19_04608 0.64 -1.6
994,411 + MPMX19_04608 0.64 +0.6
994,411 + MPMX19_04608 0.64 -0.1
994,411 + MPMX19_04608 0.64 +0.2
994,411 + MPMX19_04608 0.64 -0.1
994,411 + MPMX19_04608 0.64 -1.7
994,412 - MPMX19_04608 0.64 -0.6
994,412 - MPMX19_04608 0.64 -2.9
994,412 - MPMX19_04608 0.64 +0.8
994,412 - MPMX19_04608 0.64 +0.1
994,412 - MPMX19_04608 0.64 -2.1
994,412 - MPMX19_04608 0.64 -1.9
994,412 - MPMX19_04608 0.64 -0.6
994,412 - MPMX19_04608 0.64 -0.4
994,412 - MPMX19_04608 0.64 +1.0
994,412 - MPMX19_04608 0.64 -0.1
994,412 - MPMX19_04608 0.64 +0.3
994,796 - +0.1
994,828 - -1.6
995,043 + MPMX19_04609 0.19 -1.3
995,043 + MPMX19_04609 0.19 -1.1
995,043 + MPMX19_04609 0.19 -2.0
995,043 + MPMX19_04609 0.19 +0.1
995,043 + MPMX19_04609 0.19 -2.4
995,043 + MPMX19_04609 0.19 +0.8
995,043 + MPMX19_04609 0.19 +0.3
995,043 + MPMX19_04609 0.19 -1.7
995,043 + MPMX19_04609 0.19 -0.3
995,043 + MPMX19_04609 0.19 -0.7
995,043 + MPMX19_04609 0.19 +0.7
995,043 + MPMX19_04609 0.19 +0.6
995,043 + MPMX19_04609 0.19 -1.4
995,043 + MPMX19_04609 0.19 -0.3
995,044 - MPMX19_04609 0.19 -0.7
995,044 - MPMX19_04609 0.19 -0.6
995,044 - MPMX19_04609 0.19 +0.2
995,280 + MPMX19_04609 0.44 +0.0
995,280 + MPMX19_04609 0.44 -1.1
995,343 + MPMX19_04609 0.51 +1.0
995,344 - MPMX19_04609 0.51 +0.7
995,344 - MPMX19_04609 0.51 -0.3
995,703 + MPMX19_04609 0.90 -1.0

Or see this region's nucleotide sequence