Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04600 and MPMX19_04601 are separated by 569 nucleotides MPMX19_04601 and MPMX19_04602 overlap by 4 nucleotides MPMX19_04602 and MPMX19_04603 are separated by 132 nucleotides
MPMX19_04600: MPMX19_04600 - hypothetical protein, at 984,545 to 984,994
_04600
MPMX19_04601: MPMX19_04601 - hypothetical protein, at 985,564 to 986,859
_04601
MPMX19_04602: MPMX19_04602 - IS21 family transposase ISMex39, at 986,856 to 987,587
_04602
MPMX19_04603: MPMX19_04603 - hypothetical protein, at 987,720 to 988,175
_04603
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.274 kb on + strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.276 kb on + strand at 985.277 kb on - strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.401 kb on - strand at 985.401 kb on - strand at 985.401 kb on - strand at 985.501 kb on + strand at 985.501 kb on + strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.628 kb on + strand at 985.642 kb on + strand at 985.642 kb on + strand at 985.643 kb on - strand at 985.655 kb on - strand at 985.673 kb on - strand at 985.720 kb on + strand, within MPMX19_04601 at 985.720 kb on + strand, within MPMX19_04601 at 985.720 kb on + strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.753 kb on + strand, within MPMX19_04601 at 985.754 kb on - strand, within MPMX19_04601 at 985.861 kb on + strand, within MPMX19_04601 at 985.862 kb on - strand, within MPMX19_04601 at 985.862 kb on - strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.933 kb on - strand, within MPMX19_04601 at 985.945 kb on + strand, within MPMX19_04601 at 985.945 kb on + strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.219 kb on + strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.275 kb on + strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.357 kb on - strand, within MPMX19_04601 at 986.405 kb on - strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.833 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.856 kb on - strand at 986.856 kb on - strand at 986.856 kb on - strand at 986.904 kb on + strand at 986.904 kb on + strand at 986.923 kb on - strand at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.093 kb on - strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.205 kb on + strand, within MPMX19_04602 at 987.206 kb on - strand, within MPMX19_04602 at 987.367 kb on - strand, within MPMX19_04602 at 987.367 kb on - strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.694 kb on + strand at 987.694 kb on + strand at 987.694 kb on + strand at 987.695 kb on - strand at 987.695 kb on - strand at 987.695 kb on - strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.857 kb on + strand, within MPMX19_04603 at 987.857 kb on + strand, within MPMX19_04603
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 985,263 + +0.7 985,263 + +1.0 985,263 + +0.2 985,263 + -0.1 985,263 + -0.3 985,264 - +0.7 985,264 - +0.4 985,264 - -0.6 985,264 - +0.4 985,264 - +1.0 985,264 - +0.2 985,264 - +2.8 985,264 - -0.1 985,264 - -1.1 985,264 - +0.6 985,274 + +2.0 985,275 - -0.6 985,275 - +1.7 985,275 - +0.3 985,275 - +0.2 985,276 + -0.6 985,277 - +0.3 985,400 + -1.6 985,400 + +0.2 985,400 + +0.4 985,400 + -1.9 985,400 + -1.9 985,400 + +0.8 985,400 + +0.5 985,400 + +0.4 985,400 + -0.5 985,401 - -1.4 985,401 - +0.4 985,401 - -0.6 985,501 + -0.7 985,501 + -0.6 985,502 - +0.3 985,502 - +0.0 985,502 - +0.7 985,628 + -0.7 985,642 + +0.8 985,642 + -1.7 985,643 - -0.4 985,655 - -1.1 985,673 - -1.1 985,720 + MPMX19_04601 0.12 +0.6 985,720 + MPMX19_04601 0.12 +0.2 985,720 + MPMX19_04601 0.12 -1.8 985,721 - MPMX19_04601 0.12 -0.3 985,721 - MPMX19_04601 0.12 -1.3 985,721 - MPMX19_04601 0.12 +1.7 985,721 - MPMX19_04601 0.12 +0.0 985,721 - MPMX19_04601 0.12 -0.3 985,721 - MPMX19_04601 0.12 -0.6 985,721 - MPMX19_04601 0.12 -0.6 985,721 - MPMX19_04601 0.12 +0.4 985,753 + MPMX19_04601 0.15 -1.0 985,754 - MPMX19_04601 0.15 -2.2 985,861 + MPMX19_04601 0.23 +0.7 985,862 - MPMX19_04601 0.23 -2.6 985,862 - MPMX19_04601 0.23 -0.4 985,932 + MPMX19_04601 0.28 -1.3 985,932 + MPMX19_04601 0.28 +0.2 985,932 + MPMX19_04601 0.28 +0.6 985,933 - MPMX19_04601 0.28 -0.6 985,945 + MPMX19_04601 0.29 -1.0 985,945 + MPMX19_04601 0.29 -1.6 985,946 - MPMX19_04601 0.29 -1.1 985,946 - MPMX19_04601 0.29 -1.1 985,946 - MPMX19_04601 0.29 -0.5 985,946 - MPMX19_04601 0.29 -0.6 985,946 - MPMX19_04601 0.29 +0.5 985,946 - MPMX19_04601 0.29 -0.6 985,946 - MPMX19_04601 0.29 -0.5 985,999 + MPMX19_04601 0.34 +0.0 985,999 + MPMX19_04601 0.34 -1.8 985,999 + MPMX19_04601 0.34 -1.1 985,999 + MPMX19_04601 0.34 -0.6 985,999 + MPMX19_04601 0.34 -1.5 985,999 + MPMX19_04601 0.34 +0.3 986,000 - MPMX19_04601 0.34 +0.4 986,000 - MPMX19_04601 0.34 +0.1 986,000 - MPMX19_04601 0.34 -1.0 986,032 + MPMX19_04601 0.36 -1.3 986,032 + MPMX19_04601 0.36 +0.7 986,032 + MPMX19_04601 0.36 -1.3 986,032 + MPMX19_04601 0.36 +1.3 986,032 + MPMX19_04601 0.36 +0.9 986,033 - MPMX19_04601 0.36 +0.4 986,033 - MPMX19_04601 0.36 -1.0 986,033 - MPMX19_04601 0.36 -0.1 986,033 - MPMX19_04601 0.36 -1.7 986,033 - MPMX19_04601 0.36 +1.4 986,033 - MPMX19_04601 0.36 +0.1 986,033 - MPMX19_04601 0.36 +0.0 986,033 - MPMX19_04601 0.36 +0.4 986,149 + MPMX19_04601 0.45 -2.6 986,149 + MPMX19_04601 0.45 -2.3 986,149 + MPMX19_04601 0.45 -0.3 986,149 + MPMX19_04601 0.45 +0.7 986,150 - MPMX19_04601 0.45 +0.4 986,150 - MPMX19_04601 0.45 -1.7 986,150 - MPMX19_04601 0.45 -0.6 986,150 - MPMX19_04601 0.45 +0.5 986,150 - MPMX19_04601 0.45 +0.7 986,150 - MPMX19_04601 0.45 +0.3 986,219 + MPMX19_04601 0.51 -1.0 986,220 - MPMX19_04601 0.51 -0.6 986,220 - MPMX19_04601 0.51 +0.8 986,220 - MPMX19_04601 0.51 +0.7 986,275 + MPMX19_04601 0.55 -0.9 986,276 - MPMX19_04601 0.55 -0.8 986,276 - MPMX19_04601 0.55 +0.2 986,276 - MPMX19_04601 0.55 +1.2 986,356 + MPMX19_04601 0.61 -0.1 986,356 + MPMX19_04601 0.61 -0.1 986,356 + MPMX19_04601 0.61 +1.7 986,356 + MPMX19_04601 0.61 +1.3 986,357 - MPMX19_04601 0.61 -0.3 986,405 - MPMX19_04601 0.65 -0.6 986,500 + MPMX19_04601 0.72 +0.5 986,500 + MPMX19_04601 0.72 -1.7 986,500 + MPMX19_04601 0.72 +0.4 986,500 + MPMX19_04601 0.72 +0.2 986,500 + MPMX19_04601 0.72 -0.8 986,500 + MPMX19_04601 0.72 -1.8 986,500 + MPMX19_04601 0.72 +1.2 986,500 + MPMX19_04601 0.72 -1.3 986,500 + MPMX19_04601 0.72 +0.0 986,500 + MPMX19_04601 0.72 -1.8 986,500 + MPMX19_04601 0.72 -2.4 986,501 - MPMX19_04601 0.72 -1.1 986,501 - MPMX19_04601 0.72 +0.6 986,501 - MPMX19_04601 0.72 +0.4 986,501 - MPMX19_04601 0.72 -2.0 986,501 - MPMX19_04601 0.72 -0.1 986,501 - MPMX19_04601 0.72 -0.1 986,501 - MPMX19_04601 0.72 +0.0 986,501 - MPMX19_04601 0.72 -0.8 986,501 - MPMX19_04601 0.72 +0.6 986,501 - MPMX19_04601 0.72 -0.6 986,501 - MPMX19_04601 0.72 -0.8 986,501 - MPMX19_04601 0.72 -0.2 986,501 - MPMX19_04601 0.72 +1.0 986,501 - MPMX19_04601 0.72 -0.6 986,501 - MPMX19_04601 0.72 -1.1 986,833 + -0.1 986,855 + -0.9 986,855 + +0.8 986,855 + +1.3 986,855 + +0.4 986,855 + -0.4 986,855 + -1.0 986,856 - -0.4 986,856 - -1.5 986,856 - -0.4 986,904 + -0.1 986,904 + -0.6 986,923 - -1.4 987,030 + MPMX19_04602 0.24 +0.0 987,030 + MPMX19_04602 0.24 -0.9 987,030 + MPMX19_04602 0.24 +0.2 987,030 + MPMX19_04602 0.24 -0.8 987,031 - MPMX19_04602 0.24 +1.3 987,031 - MPMX19_04602 0.24 -1.1 987,031 - MPMX19_04602 0.24 +1.4 987,031 - MPMX19_04602 0.24 -2.4 987,093 - MPMX19_04602 0.32 -0.0 987,155 + MPMX19_04602 0.41 -0.2 987,155 + MPMX19_04602 0.41 -0.8 987,155 + MPMX19_04602 0.41 -0.1 987,155 + MPMX19_04602 0.41 +1.3 987,155 + MPMX19_04602 0.41 -1.3 987,155 + MPMX19_04602 0.41 -0.6 987,156 - MPMX19_04602 0.41 -0.4 987,156 - MPMX19_04602 0.41 -0.9 987,156 - MPMX19_04602 0.41 -0.1 987,205 + MPMX19_04602 0.48 +0.8 987,206 - MPMX19_04602 0.48 -1.4 987,367 - MPMX19_04602 0.70 +1.0 987,367 - MPMX19_04602 0.70 -0.5 987,423 + MPMX19_04602 0.77 +0.7 987,423 + MPMX19_04602 0.77 -0.3 987,423 + MPMX19_04602 0.77 +0.4 987,694 + +0.0 987,694 + +0.2 987,694 + -0.3 987,695 - -0.8 987,695 - -0.3 987,695 - +1.2 987,756 + -1.0 987,756 + -1.3 987,756 + +0.7 987,756 + -0.3 987,756 + -1.1 987,756 + +0.4 987,757 - -1.1 987,757 - -0.2 987,757 - +0.8 987,757 - +1.4 987,757 - -1.3 987,757 - -0.2 987,757 - +1.0 987,757 - -0.4 987,857 + MPMX19_04603 0.30 -1.3 987,857 + MPMX19_04603 0.30 +0.0
Or see this region's nucleotide sequence