Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04597

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04595 and MPMX19_04596 are separated by 137 nucleotidesMPMX19_04596 and MPMX19_04597 overlap by 4 nucleotidesMPMX19_04597 and MPMX19_04598 are separated by 86 nucleotides MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190 _04595 MPMX19_04596: MPMX19_04596 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 980,328 to 981,020 _04596 MPMX19_04597: MPMX19_04597 - Adaptive-response sensory-kinase SasA, at 981,017 to 982,657 _04597 MPMX19_04598: MPMX19_04598 - putative ABC transporter ATP-binding protein YadG, at 982,744 to 983,670 _04598 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2at 980.140 kb on + strandat 980.140 kb on + strandat 980.141 kb on - strandat 980.141 kb on - strandat 980.313 kb on + strandat 980.313 kb on + strandat 980.314 kb on - strandat 980.314 kb on - strandat 980.619 kb on + strand, within MPMX19_04596at 980.619 kb on + strand, within MPMX19_04596at 980.619 kb on + strand, within MPMX19_04596at 980.620 kb on - strand, within MPMX19_04596at 980.620 kb on - strand, within MPMX19_04596at 980.883 kb on + strand, within MPMX19_04596at 980.883 kb on + strand, within MPMX19_04596at 980.884 kb on - strand, within MPMX19_04596at 980.884 kb on - strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.997 kb on + strandat 980.997 kb on + strandat 980.998 kb on - strandat 980.998 kb on - strandat 981.206 kb on + strand, within MPMX19_04597at 981.206 kb on + strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.770 kb on + strand, within MPMX19_04597at 981.771 kb on - strand, within MPMX19_04597at 981.771 kb on - strand, within MPMX19_04597at 982.013 kb on + strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.102 kb on + strand, within MPMX19_04597at 982.102 kb on + strand, within MPMX19_04597at 982.103 kb on - strand, within MPMX19_04597at 982.103 kb on - strand, within MPMX19_04597at 982.103 kb on - strand, within MPMX19_04597at 982.291 kb on + strand, within MPMX19_04597at 982.291 kb on + strand, within MPMX19_04597at 982.291 kb on + strand, within MPMX19_04597at 982.292 kb on - strand, within MPMX19_04597at 982.645 kb on - strandat 982.645 kb on - strandat 982.683 kb on + strandat 982.684 kb on - strandat 982.743 kb on + strandat 982.743 kb on + strandat 982.743 kb on + strandat 982.743 kb on + strandat 982.743 kb on + strandat 982.743 kb on + strandat 982.744 kb on - strandat 982.752 kb on + strandat 982.752 kb on + strandat 982.752 kb on + strandat 982.755 kb on - strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.783 kb on + strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 982.784 kb on - strandat 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.320 kb on + strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.321 kb on - strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.322 kb on + strand, within MPMX19_04598at 983.323 kb on - strand, within MPMX19_04598at 983.323 kb on - strand, within MPMX19_04598at 983.323 kb on - strand, within MPMX19_04598at 983.323 kb on - strand, within MPMX19_04598at 983.323 kb on - strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.524 kb on + strand, within MPMX19_04598at 983.525 kb on - strand, within MPMX19_04598at 983.525 kb on - strand, within MPMX19_04598at 983.525 kb on - strand, within MPMX19_04598at 983.599 kb on + strandat 983.599 kb on + strandat 983.599 kb on + strandat 983.600 kb on - strandat 983.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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980,140 + -2.0
980,140 + +0.4
980,141 - +0.7
980,141 - +0.7
980,313 + +0.5
980,313 + +0.2
980,314 - +1.3
980,314 - -0.8
980,619 + MPMX19_04596 0.42 -2.4
980,619 + MPMX19_04596 0.42 +0.2
980,619 + MPMX19_04596 0.42 +0.8
980,620 - MPMX19_04596 0.42 +1.0
980,620 - MPMX19_04596 0.42 +0.8
980,883 + MPMX19_04596 0.80 -0.2
980,883 + MPMX19_04596 0.80 -0.1
980,884 - MPMX19_04596 0.80 +0.0
980,884 - MPMX19_04596 0.80 -1.3
980,898 + MPMX19_04596 0.82 -0.2
980,898 + MPMX19_04596 0.82 +0.0
980,898 + MPMX19_04596 0.82 -1.0
980,898 + MPMX19_04596 0.82 -0.8
980,898 + MPMX19_04596 0.82 -0.9
980,898 + MPMX19_04596 0.82 -0.3
980,899 - MPMX19_04596 0.82 +0.8
980,899 - MPMX19_04596 0.82 -0.4
980,899 - MPMX19_04596 0.82 -1.6
980,899 - MPMX19_04596 0.82 -1.5
980,899 - MPMX19_04596 0.82 +1.0
980,899 - MPMX19_04596 0.82 -2.6
980,997 + +0.0
980,997 + +0.1
980,998 - -2.0
980,998 - +0.7
981,206 + MPMX19_04597 0.12 -0.3
981,206 + MPMX19_04597 0.12 -1.4
981,207 - MPMX19_04597 0.12 +1.0
981,207 - MPMX19_04597 0.12 -1.1
981,207 - MPMX19_04597 0.12 +0.1
981,207 - MPMX19_04597 0.12 -1.0
981,770 + MPMX19_04597 0.46 +1.2
981,771 - MPMX19_04597 0.46 -1.4
981,771 - MPMX19_04597 0.46 -0.1
982,013 + MPMX19_04597 0.61 +0.5
982,014 - MPMX19_04597 0.61 +0.6
982,014 - MPMX19_04597 0.61 +0.4
982,014 - MPMX19_04597 0.61 +0.5
982,014 - MPMX19_04597 0.61 -0.7
982,014 - MPMX19_04597 0.61 +0.1
982,014 - MPMX19_04597 0.61 -2.3
982,014 - MPMX19_04597 0.61 -1.1
982,014 - MPMX19_04597 0.61 -1.8
982,102 + MPMX19_04597 0.66 -0.1
982,102 + MPMX19_04597 0.66 +0.2
982,103 - MPMX19_04597 0.66 +1.0
982,103 - MPMX19_04597 0.66 -0.8
982,103 - MPMX19_04597 0.66 -0.1
982,291 + MPMX19_04597 0.78 +0.4
982,291 + MPMX19_04597 0.78 +1.6
982,291 + MPMX19_04597 0.78 -0.3
982,292 - MPMX19_04597 0.78 +0.9
982,645 - +1.0
982,645 - +0.4
982,683 + -0.9
982,684 - -1.1
982,743 + -0.7
982,743 + +1.3
982,743 + -1.1
982,743 + -1.4
982,743 + -1.4
982,743 + +0.0
982,744 - +0.7
982,752 + -0.3
982,752 + +0.1
982,752 + -1.1
982,755 - +0.7
982,783 + -1.4
982,783 + +1.8
982,783 + -0.8
982,783 + +0.1
982,783 + +0.1
982,783 + -0.9
982,783 + +0.0
982,783 + +0.0
982,783 + +0.1
982,783 + -0.8
982,783 + +0.3
982,784 - -0.5
982,784 - +0.9
982,784 - +0.1
982,784 - +0.2
982,784 - -1.1
982,784 - -0.4
982,784 - +1.3
982,784 - -1.7
982,784 - -1.7
982,784 - -1.4
982,784 - +0.2
982,784 - +0.0
982,784 - +0.5
982,784 - -0.6
982,784 - -0.4
982,784 - -0.8
982,784 - -0.3
982,784 - -0.6
982,784 - +0.0
982,784 - -0.2
983,320 + MPMX19_04598 0.62 -2.1
983,320 + MPMX19_04598 0.62 +0.1
983,320 + MPMX19_04598 0.62 +0.4
983,320 + MPMX19_04598 0.62 -1.3
983,320 + MPMX19_04598 0.62 -1.1
983,320 + MPMX19_04598 0.62 -0.4
983,320 + MPMX19_04598 0.62 -0.3
983,321 - MPMX19_04598 0.62 -0.6
983,321 - MPMX19_04598 0.62 +0.8
983,321 - MPMX19_04598 0.62 -1.2
983,321 - MPMX19_04598 0.62 -1.2
983,321 - MPMX19_04598 0.62 +0.0
983,321 - MPMX19_04598 0.62 -1.0
983,321 - MPMX19_04598 0.62 -0.3
983,321 - MPMX19_04598 0.62 +0.0
983,321 - MPMX19_04598 0.62 +0.1
983,321 - MPMX19_04598 0.62 -2.0
983,321 - MPMX19_04598 0.62 +0.1
983,321 - MPMX19_04598 0.62 +0.0
983,321 - MPMX19_04598 0.62 -0.4
983,321 - MPMX19_04598 0.62 -1.1
983,321 - MPMX19_04598 0.62 -1.1
983,321 - MPMX19_04598 0.62 -0.6
983,321 - MPMX19_04598 0.62 +0.2
983,321 - MPMX19_04598 0.62 -1.9
983,321 - MPMX19_04598 0.62 -0.6
983,322 + MPMX19_04598 0.62 +0.3
983,322 + MPMX19_04598 0.62 -2.2
983,322 + MPMX19_04598 0.62 -0.6
983,322 + MPMX19_04598 0.62 +0.1
983,322 + MPMX19_04598 0.62 -1.9
983,322 + MPMX19_04598 0.62 -1.3
983,323 - MPMX19_04598 0.62 -1.9
983,323 - MPMX19_04598 0.62 +0.3
983,323 - MPMX19_04598 0.62 +0.2
983,323 - MPMX19_04598 0.62 -1.0
983,323 - MPMX19_04598 0.62 +1.0
983,524 + MPMX19_04598 0.84 +0.1
983,524 + MPMX19_04598 0.84 -0.4
983,524 + MPMX19_04598 0.84 +0.0
983,524 + MPMX19_04598 0.84 -0.8
983,524 + MPMX19_04598 0.84 +0.1
983,524 + MPMX19_04598 0.84 -0.0
983,525 - MPMX19_04598 0.84 -1.0
983,525 - MPMX19_04598 0.84 -0.1
983,525 - MPMX19_04598 0.84 -0.2
983,599 + -1.1
983,599 + -1.7
983,599 + -0.1
983,600 - -0.3
983,600 - -0.9

Or see this region's nucleotide sequence