Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04591

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04590 and MPMX19_04591 are separated by 8 nucleotidesMPMX19_04591 and MPMX19_04592 are separated by 35 nucleotides MPMX19_04590: MPMX19_04590 - Nitrate import ATP-binding protein NrtD, at 972,571 to 973,404 _04590 MPMX19_04591: MPMX19_04591 - hypothetical protein, at 973,413 to 974,300 _04591 MPMX19_04592: MPMX19_04592 - hypothetical protein, at 974,336 to 975,370 _04592 Position (kb) 973 974 975Strain fitness (log2 ratio) -2 -1 0 1 2at 972.658 kb on - strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.675 kb on - strand, within MPMX19_04590at 972.675 kb on - strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.727 kb on + strand, within MPMX19_04590at 972.727 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.823 kb on + strand, within MPMX19_04590at 972.824 kb on - strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.533 kb on + strand, within MPMX19_04591at 973.533 kb on + strand, within MPMX19_04591at 973.534 kb on - strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.729 kb on - strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.320 kb on + strandat 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.475 kb on - strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.724 kb on - strand, within MPMX19_04592at 974.724 kb on - strand, within MPMX19_04592at 974.864 kb on + strand, within MPMX19_04592at 974.864 kb on + strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.913 kb on - strand, within MPMX19_04592at 974.969 kb on + strand, within MPMX19_04592at 974.970 kb on - strand, within MPMX19_04592at 974.970 kb on - strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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972,658 - MPMX19_04590 0.10 +0.1
972,674 + MPMX19_04590 0.12 -1.4
972,674 + MPMX19_04590 0.12 -0.7
972,674 + MPMX19_04590 0.12 -1.0
972,675 - MPMX19_04590 0.12 -0.4
972,675 - MPMX19_04590 0.12 +0.4
972,694 + MPMX19_04590 0.15 +1.5
972,694 + MPMX19_04590 0.15 +0.0
972,694 + MPMX19_04590 0.15 -2.5
972,694 + MPMX19_04590 0.15 +0.7
972,694 + MPMX19_04590 0.15 -0.1
972,694 + MPMX19_04590 0.15 +1.0
972,695 - MPMX19_04590 0.15 +1.3
972,695 - MPMX19_04590 0.15 +0.6
972,695 - MPMX19_04590 0.15 -0.7
972,695 - MPMX19_04590 0.15 -2.4
972,695 - MPMX19_04590 0.15 -0.1
972,695 - MPMX19_04590 0.15 -0.3
972,727 + MPMX19_04590 0.19 -0.6
972,727 + MPMX19_04590 0.19 +1.5
972,763 + MPMX19_04590 0.23 -0.6
972,763 + MPMX19_04590 0.23 -0.8
972,763 + MPMX19_04590 0.23 -0.3
972,763 + MPMX19_04590 0.23 -0.4
972,763 + MPMX19_04590 0.23 -0.6
972,763 + MPMX19_04590 0.23 -1.3
972,764 - MPMX19_04590 0.23 +1.0
972,764 - MPMX19_04590 0.23 +0.9
972,764 - MPMX19_04590 0.23 -1.0
972,764 - MPMX19_04590 0.23 -1.4
972,764 - MPMX19_04590 0.23 -0.6
972,764 - MPMX19_04590 0.23 -0.8
972,823 + MPMX19_04590 0.30 -1.4
972,824 - MPMX19_04590 0.30 -1.4
973,015 + MPMX19_04590 0.53 +1.3
973,015 + MPMX19_04590 0.53 +0.4
973,015 + MPMX19_04590 0.53 -0.4
973,015 + MPMX19_04590 0.53 -0.3
973,015 + MPMX19_04590 0.53 +1.0
973,015 + MPMX19_04590 0.53 -0.4
973,015 + MPMX19_04590 0.53 +0.1
973,015 + MPMX19_04590 0.53 +0.6
973,016 - MPMX19_04590 0.53 +1.0
973,016 - MPMX19_04590 0.53 +0.6
973,016 - MPMX19_04590 0.53 +0.9
973,016 - MPMX19_04590 0.53 +1.0
973,016 - MPMX19_04590 0.53 -0.6
973,016 - MPMX19_04590 0.53 -1.9
973,016 - MPMX19_04590 0.53 -0.7
973,016 - MPMX19_04590 0.53 -0.2
973,016 - MPMX19_04590 0.53 -2.1
973,016 - MPMX19_04590 0.53 -0.4
973,016 - MPMX19_04590 0.53 +0.9
973,147 + MPMX19_04590 0.69 +0.4
973,147 + MPMX19_04590 0.69 -2.4
973,147 + MPMX19_04590 0.69 -1.1
973,148 - MPMX19_04590 0.69 +2.0
973,148 - MPMX19_04590 0.69 -1.4
973,148 - MPMX19_04590 0.69 +0.7
973,533 + MPMX19_04591 0.14 +2.0
973,533 + MPMX19_04591 0.14 +0.1
973,534 - MPMX19_04591 0.14 -1.0
973,596 + MPMX19_04591 0.21 +1.3
973,596 + MPMX19_04591 0.21 -0.1
973,596 + MPMX19_04591 0.21 +0.3
973,596 + MPMX19_04591 0.21 +1.6
973,597 - MPMX19_04591 0.21 +1.2
973,597 - MPMX19_04591 0.21 +0.0
973,729 - MPMX19_04591 0.36 -0.1
973,992 + MPMX19_04591 0.65 -0.3
973,992 + MPMX19_04591 0.65 +0.7
973,992 + MPMX19_04591 0.65 -0.1
973,992 + MPMX19_04591 0.65 -0.7
973,992 + MPMX19_04591 0.65 -0.6
973,993 - MPMX19_04591 0.65 +0.4
973,993 - MPMX19_04591 0.65 -2.1
974,154 + MPMX19_04591 0.83 -0.3
974,154 + MPMX19_04591 0.83 +0.0
974,154 + MPMX19_04591 0.83 +0.0
974,154 + MPMX19_04591 0.83 +1.6
974,154 + MPMX19_04591 0.83 -1.4
974,154 + MPMX19_04591 0.83 -0.9
974,154 + MPMX19_04591 0.83 -1.1
974,154 + MPMX19_04591 0.83 -0.2
974,154 + MPMX19_04591 0.83 -0.6
974,155 - MPMX19_04591 0.84 +1.1
974,155 - MPMX19_04591 0.84 -0.1
974,155 - MPMX19_04591 0.84 +1.0
974,155 - MPMX19_04591 0.84 -1.6
974,155 - MPMX19_04591 0.84 +0.2
974,320 + -0.6
974,462 + MPMX19_04592 0.12 -0.6
974,462 + MPMX19_04592 0.12 +0.7
974,462 + MPMX19_04592 0.12 +1.0
974,462 + MPMX19_04592 0.12 +0.2
974,463 - MPMX19_04592 0.12 -1.6
974,463 - MPMX19_04592 0.12 -1.2
974,463 - MPMX19_04592 0.12 +0.3
974,474 + MPMX19_04592 0.13 -1.6
974,474 + MPMX19_04592 0.13 +1.1
974,474 + MPMX19_04592 0.13 -0.6
974,474 + MPMX19_04592 0.13 -1.2
974,474 + MPMX19_04592 0.13 -0.5
974,475 - MPMX19_04592 0.13 -1.4
974,723 + MPMX19_04592 0.37 -0.3
974,723 + MPMX19_04592 0.37 -0.3
974,723 + MPMX19_04592 0.37 -0.3
974,723 + MPMX19_04592 0.37 -0.2
974,724 - MPMX19_04592 0.37 -0.3
974,724 - MPMX19_04592 0.37 +0.1
974,864 + MPMX19_04592 0.51 -0.8
974,864 + MPMX19_04592 0.51 +0.4
974,865 - MPMX19_04592 0.51 -0.7
974,865 - MPMX19_04592 0.51 -0.4
974,865 - MPMX19_04592 0.51 -0.6
974,865 - MPMX19_04592 0.51 -0.6
974,912 + MPMX19_04592 0.56 -0.6
974,912 + MPMX19_04592 0.56 -0.9
974,912 + MPMX19_04592 0.56 +0.6
974,912 + MPMX19_04592 0.56 -0.7
974,912 + MPMX19_04592 0.56 -1.2
974,912 + MPMX19_04592 0.56 +1.0
974,912 + MPMX19_04592 0.56 +0.4
974,913 - MPMX19_04592 0.56 +0.3
974,969 + MPMX19_04592 0.61 -0.1
974,970 - MPMX19_04592 0.61 -0.3
974,970 - MPMX19_04592 0.61 +1.4
975,056 + MPMX19_04592 0.70 -1.0
975,056 + MPMX19_04592 0.70 -1.3
975,056 + MPMX19_04592 0.70 +1.4
975,056 + MPMX19_04592 0.70 +0.3
975,057 - MPMX19_04592 0.70 +0.4
975,057 - MPMX19_04592 0.70 +0.4
975,057 - MPMX19_04592 0.70 -1.7
975,057 - MPMX19_04592 0.70 +0.0
975,057 - MPMX19_04592 0.70 -1.2
975,170 + MPMX19_04592 0.81 +1.3
975,170 + MPMX19_04592 0.81 -0.6
975,170 + MPMX19_04592 0.81 -0.7
975,170 + MPMX19_04592 0.81 +0.3
975,170 + MPMX19_04592 0.81 -1.0
975,170 + MPMX19_04592 0.81 -1.7
975,170 + MPMX19_04592 0.81 +1.5
975,170 + MPMX19_04592 0.81 +0.1
975,170 + MPMX19_04592 0.81 -0.3
975,170 + MPMX19_04592 0.81 -0.7
975,170 + MPMX19_04592 0.81 +0.4
975,170 + MPMX19_04592 0.81 +1.4
975,170 + MPMX19_04592 0.81 +1.2
975,170 + MPMX19_04592 0.81 -0.6
975,170 + MPMX19_04592 0.81 -0.5
975,171 - MPMX19_04592 0.81 +0.8
975,171 - MPMX19_04592 0.81 -1.4
975,171 - MPMX19_04592 0.81 -1.7
975,171 - MPMX19_04592 0.81 -0.2
975,171 - MPMX19_04592 0.81 -0.6
975,171 - MPMX19_04592 0.81 -1.0
975,171 - MPMX19_04592 0.81 -1.4
975,171 - MPMX19_04592 0.81 -0.5
975,171 - MPMX19_04592 0.81 -0.1
975,171 - MPMX19_04592 0.81 -0.4
975,171 - MPMX19_04592 0.81 -0.3
975,171 - MPMX19_04592 0.81 -0.4
975,171 - MPMX19_04592 0.81 -1.2
975,171 - MPMX19_04592 0.81 +2.3
975,171 - MPMX19_04592 0.81 +0.4
975,171 - MPMX19_04592 0.81 +2.0
975,171 - MPMX19_04592 0.81 -1.1
975,171 - MPMX19_04592 0.81 -0.3

Or see this region's nucleotide sequence