Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04558 and MPMX19_04559 are separated by 27 nucleotides MPMX19_04559 and MPMX19_04560 overlap by 4 nucleotides MPMX19_04560 and MPMX19_04561 overlap by 4 nucleotides
MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437
_04558
MPMX19_04559: MPMX19_04559 - hypothetical protein, at 940,465 to 942,192
_04559
MPMX19_04560: MPMX19_04560 - hypothetical protein, at 942,189 to 942,710
_04560
MPMX19_04561: MPMX19_04561 - hypothetical protein, at 942,707 to 943,528
_04561
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 939.498 kb on - strand, within MPMX19_04558 at 940.037 kb on + strand, within MPMX19_04558 at 940.037 kb on + strand, within MPMX19_04558 at 940.038 kb on - strand, within MPMX19_04558 at 940.218 kb on - strand at 940.218 kb on - strand at 940.218 kb on - strand at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.299 kb on - strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.601 kb on + strand, within MPMX19_04560
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 939,498 - MPMX19_04558 0.64 -0.6 940,037 + MPMX19_04558 0.85 -0.8 940,037 + MPMX19_04558 0.85 +0.0 940,038 - MPMX19_04558 0.85 -0.6 940,218 - -1.6 940,218 - +0.4 940,218 - +0.0 941,475 + MPMX19_04559 0.58 -1.6 941,475 + MPMX19_04559 0.58 -3.5 941,475 + MPMX19_04559 0.58 -0.1 941,475 + MPMX19_04559 0.58 -0.9 941,476 - MPMX19_04559 0.59 +0.8 941,476 - MPMX19_04559 0.59 +0.1 941,476 - MPMX19_04559 0.59 -1.8 941,476 - MPMX19_04559 0.59 -1.1 941,476 - MPMX19_04559 0.59 -1.1 941,843 + MPMX19_04559 0.80 -2.3 941,843 + MPMX19_04559 0.80 +1.0 941,844 - MPMX19_04559 0.80 -1.3 941,844 - MPMX19_04559 0.80 -2.4 941,849 + MPMX19_04559 0.80 -1.1 941,849 + MPMX19_04559 0.80 +0.0 941,850 - MPMX19_04559 0.80 -1.3 941,850 - MPMX19_04559 0.80 -1.6 941,927 + MPMX19_04559 0.85 -1.1 941,927 + MPMX19_04559 0.85 +0.7 941,927 + MPMX19_04559 0.85 +0.1 941,927 + MPMX19_04559 0.85 +1.6 941,927 + MPMX19_04559 0.85 +1.0 941,928 - MPMX19_04559 0.85 -1.1 941,928 - MPMX19_04559 0.85 -0.6 941,928 - MPMX19_04559 0.85 +0.4 942,298 + MPMX19_04560 0.21 +0.3 942,298 + MPMX19_04560 0.21 +0.0 942,298 + MPMX19_04560 0.21 -0.3 942,299 - MPMX19_04560 0.21 -0.1 942,484 + MPMX19_04560 0.57 -0.3 942,484 + MPMX19_04560 0.57 -1.1 942,601 + MPMX19_04560 0.79 +0.2
Or see this region's nucleotide sequence