Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04555 and MPMX19_04556 are separated by 63 nucleotides MPMX19_04556 and MPMX19_04557 are separated by 546 nucleotides MPMX19_04557 and MPMX19_04558 are separated by 184 nucleotides
MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606
_04555
MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873
_04556
MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625
_04557
MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437
_04558
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.642 kb on + strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.791 kb on + strand, within MPMX19_04556 at 935.889 kb on + strand at 935.889 kb on + strand at 935.890 kb on - strand at 935.924 kb on - strand at 935.982 kb on + strand at 935.983 kb on - strand at 936.026 kb on + strand at 936.034 kb on + strand at 936.035 kb on - strand at 936.035 kb on - strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.386 kb on - strand at 936.419 kb on + strand at 936.420 kb on - strand at 936.564 kb on + strand, within MPMX19_04557 at 936.564 kb on + strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.951 kb on + strand, within MPMX19_04557 at 936.951 kb on + strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 937.050 kb on + strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.585 kb on - strand at 937.623 kb on + strand at 937.624 kb on - strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 938.058 kb on + strand at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.097 kb on - strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 935,437 + -1.0 935,437 + -0.3 935,438 - -2.2 935,642 + -1.0 935,643 - -0.2 935,643 - +1.3 935,643 - +0.0 935,643 - -0.2 935,791 + MPMX19_04556 0.59 +0.9 935,889 + -0.6 935,889 + -0.8 935,890 - -1.1 935,924 - -1.4 935,982 + +0.0 935,983 - -1.6 936,026 + -1.3 936,034 + -0.8 936,035 - -1.8 936,035 - +0.6 936,331 + -1.1 936,331 + -0.5 936,331 + -1.0 936,333 + -0.6 936,333 + +0.6 936,333 + -0.2 936,333 + -0.1 936,333 + -1.0 936,333 + +0.0 936,333 + -0.6 936,333 - +0.4 936,334 - -0.6 936,334 - -1.6 936,334 - -1.7 936,335 + -0.8 936,335 + +0.3 936,335 + +0.0 936,335 + -0.0 936,335 + +0.8 936,335 + -2.0 936,336 - +0.1 936,336 - -1.8 936,336 - +0.8 936,336 - -0.9 936,336 - +0.1 936,386 - -0.4 936,419 + +0.3 936,420 - -0.9 936,564 + MPMX19_04557 0.12 -1.6 936,564 + MPMX19_04557 0.12 -0.5 936,565 - MPMX19_04557 0.12 +0.0 936,565 - MPMX19_04557 0.12 -0.8 936,585 + MPMX19_04557 0.14 +0.8 936,585 + MPMX19_04557 0.14 -0.3 936,762 + MPMX19_04557 0.28 -0.4 936,762 + MPMX19_04557 0.28 -1.0 936,762 + MPMX19_04557 0.28 -1.0 936,762 + MPMX19_04557 0.28 -0.3 936,762 + MPMX19_04557 0.28 +1.0 936,762 + MPMX19_04557 0.28 +0.4 936,762 + MPMX19_04557 0.28 -1.0 936,762 + MPMX19_04557 0.28 +1.4 936,762 + MPMX19_04557 0.28 -1.4 936,762 + MPMX19_04557 0.28 +1.0 936,762 + MPMX19_04557 0.28 +0.0 936,763 - MPMX19_04557 0.28 -0.8 936,763 - MPMX19_04557 0.28 +0.7 936,763 - MPMX19_04557 0.28 +0.4 936,763 - MPMX19_04557 0.28 +1.0 936,763 - MPMX19_04557 0.28 -0.0 936,763 - MPMX19_04557 0.28 +1.0 936,763 - MPMX19_04557 0.28 +1.7 936,951 + MPMX19_04557 0.44 +0.7 936,951 + MPMX19_04557 0.44 +0.3 936,952 - MPMX19_04557 0.44 +1.0 936,952 - MPMX19_04557 0.44 -0.6 936,952 - MPMX19_04557 0.44 -0.3 936,952 - MPMX19_04557 0.44 +0.8 937,050 + MPMX19_04557 0.52 -1.0 937,051 - MPMX19_04557 0.52 -0.8 937,051 - MPMX19_04557 0.52 -0.2 937,051 - MPMX19_04557 0.52 -0.4 937,051 - MPMX19_04557 0.52 -0.3 937,585 - -0.1 937,623 + -0.2 937,624 - -0.2 937,877 + -1.0 937,877 + -1.7 937,877 + +0.3 937,877 + -1.6 937,878 - -2.3 937,878 - -0.2 937,878 - +0.8 937,878 - -0.4 937,878 - -0.6 937,878 - -0.1 937,878 - +1.4 937,889 + +0.3 937,889 + -0.1 937,889 + +0.4 937,889 + -1.1 937,889 + -0.6 937,889 + -0.6 937,889 + -0.4 937,889 + +0.1 937,890 - -1.6 937,890 - -0.8 937,890 - -2.1 937,890 - +0.7 937,890 - +0.0 938,058 + -0.1 938,096 + MPMX19_04558 0.11 +1.0 938,096 + MPMX19_04558 0.11 -0.7 938,096 + MPMX19_04558 0.11 +0.6 938,096 + MPMX19_04558 0.11 -0.1 938,097 - MPMX19_04558 0.11 +0.7 938,261 + MPMX19_04558 0.17 -2.9 938,261 + MPMX19_04558 0.17 -0.7 938,261 + MPMX19_04558 0.17 -1.3 938,261 + MPMX19_04558 0.17 -0.4 938,261 + MPMX19_04558 0.17 -1.1 938,262 - MPMX19_04558 0.17 +0.9 938,262 - MPMX19_04558 0.17 -0.2 938,262 - MPMX19_04558 0.17 -0.3 938,262 - MPMX19_04558 0.17 +0.8 938,262 - MPMX19_04558 0.17 -1.1 938,262 - MPMX19_04558 0.17 +1.0 938,262 - MPMX19_04558 0.17 +1.2 938,520 - MPMX19_04558 0.27 +1.0 938,520 - MPMX19_04558 0.27 -0.8 938,520 - MPMX19_04558 0.27 -1.1 938,520 - MPMX19_04558 0.27 -0.8 938,520 - MPMX19_04558 0.27 +1.3 938,520 - MPMX19_04558 0.27 -1.3 938,520 - MPMX19_04558 0.27 +0.1
Or see this region's nucleotide sequence