Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04551

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04549 and MPMX19_04550 are separated by 79 nucleotidesMPMX19_04550 and MPMX19_04551 are separated by 13 nucleotidesMPMX19_04551 and MPMX19_04552 are separated by 62 nucleotides MPMX19_04549: MPMX19_04549 - L-cystine-binding protein FliY, at 926,166 to 926,996 _04549 MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771 _04550 MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474 _04551 MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961 _04552 Position (kb) 927 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 926.791 kb on - strand, within MPMX19_04549at 926.922 kb on + strandat 926.922 kb on + strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.128 kb on - strandat 927.128 kb on - strandat 927.230 kb on - strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.674 kb on - strand, within MPMX19_04550at 927.740 kb on - strandat 928.017 kb on - strand, within MPMX19_04551at 928.193 kb on + strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.463 kb on + strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.472 kb on + strandat 928.473 kb on - strandat 928.473 kb on - strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.867 kb on + strand, within MPMX19_04552at 928.867 kb on + strand, within MPMX19_04552at 928.868 kb on - strand, within MPMX19_04552at 928.868 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.982 kb on - strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.162 kb on - strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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926,791 - MPMX19_04549 0.75 -1.1
926,922 + -1.9
926,922 + -2.7
926,923 - -1.4
926,923 - -0.8
926,923 - +0.8
926,923 - -0.3
927,112 + +0.4
927,112 + +1.2
927,112 + -0.6
927,112 + -1.8
927,112 + +0.4
927,112 + +0.7
927,113 - -1.0
927,113 - -0.4
927,113 - -1.3
927,113 - -2.3
927,128 - -1.8
927,128 - +1.0
927,230 - MPMX19_04550 0.22 +0.4
927,259 + MPMX19_04550 0.26 +0.3
927,259 + MPMX19_04550 0.26 -1.0
927,259 + MPMX19_04550 0.26 +0.2
927,259 + MPMX19_04550 0.26 +0.3
927,259 + MPMX19_04550 0.26 -0.7
927,259 + MPMX19_04550 0.26 +0.2
927,259 + MPMX19_04550 0.26 -1.2
927,259 + MPMX19_04550 0.26 -2.1
927,259 + MPMX19_04550 0.26 +2.0
927,259 + MPMX19_04550 0.26 -1.4
927,260 - MPMX19_04550 0.26 +0.0
927,260 - MPMX19_04550 0.26 -0.2
927,260 - MPMX19_04550 0.26 -0.6
927,260 - MPMX19_04550 0.26 -0.0
927,260 - MPMX19_04550 0.26 -0.5
927,260 - MPMX19_04550 0.26 -0.4
927,260 - MPMX19_04550 0.26 +1.1
927,260 - MPMX19_04550 0.26 -1.0
927,310 + MPMX19_04550 0.34 -0.6
927,310 + MPMX19_04550 0.34 +1.0
927,310 + MPMX19_04550 0.34 -1.4
927,310 + MPMX19_04550 0.34 -2.1
927,310 + MPMX19_04550 0.34 +0.2
927,310 + MPMX19_04550 0.34 +0.4
927,310 + MPMX19_04550 0.34 -2.1
927,310 + MPMX19_04550 0.34 -1.0
927,311 - MPMX19_04550 0.34 -2.8
927,311 - MPMX19_04550 0.34 -0.4
927,311 - MPMX19_04550 0.34 -0.6
927,311 - MPMX19_04550 0.34 -1.1
927,311 - MPMX19_04550 0.34 -0.2
927,311 - MPMX19_04550 0.34 +0.0
927,311 - MPMX19_04550 0.34 +0.3
927,311 - MPMX19_04550 0.34 -1.1
927,392 - MPMX19_04550 0.45 -0.8
927,392 - MPMX19_04550 0.45 -1.3
927,392 - MPMX19_04550 0.45 +0.4
927,490 + MPMX19_04550 0.59 +0.0
927,490 + MPMX19_04550 0.59 -0.3
927,490 + MPMX19_04550 0.59 +0.4
927,490 + MPMX19_04550 0.59 +1.1
927,490 + MPMX19_04550 0.59 -1.3
927,490 + MPMX19_04550 0.59 -1.0
927,490 + MPMX19_04550 0.59 +0.0
927,490 + MPMX19_04550 0.59 -1.1
927,490 + MPMX19_04550 0.59 -0.6
927,490 + MPMX19_04550 0.59 +0.4
927,490 + MPMX19_04550 0.59 +0.2
927,490 + MPMX19_04550 0.59 -1.4
927,490 + MPMX19_04550 0.59 -0.2
927,490 + MPMX19_04550 0.59 -0.3
927,490 + MPMX19_04550 0.59 -1.8
927,491 - MPMX19_04550 0.60 -0.7
927,491 - MPMX19_04550 0.60 +0.8
927,491 - MPMX19_04550 0.60 -0.4
927,491 - MPMX19_04550 0.60 -0.2
927,491 - MPMX19_04550 0.60 +0.2
927,491 - MPMX19_04550 0.60 -0.4
927,491 - MPMX19_04550 0.60 -1.0
927,491 - MPMX19_04550 0.60 +0.4
927,491 - MPMX19_04550 0.60 +0.0
927,491 - MPMX19_04550 0.60 +0.0
927,491 - MPMX19_04550 0.60 +0.8
927,670 + MPMX19_04550 0.85 -1.3
927,670 + MPMX19_04550 0.85 +0.5
927,670 + MPMX19_04550 0.85 +0.6
927,670 + MPMX19_04550 0.85 -1.7
927,670 + MPMX19_04550 0.85 -1.1
927,670 + MPMX19_04550 0.85 -0.8
927,670 + MPMX19_04550 0.85 +0.6
927,670 + MPMX19_04550 0.85 +0.7
927,670 + MPMX19_04550 0.85 -1.9
927,671 - MPMX19_04550 0.85 -0.9
927,671 - MPMX19_04550 0.85 -0.1
927,671 - MPMX19_04550 0.85 +1.3
927,671 - MPMX19_04550 0.85 +0.1
927,673 + MPMX19_04550 0.86 -1.6
927,673 + MPMX19_04550 0.86 +0.4
927,673 + MPMX19_04550 0.86 +1.0
927,673 + MPMX19_04550 0.86 +0.2
927,673 + MPMX19_04550 0.86 -0.5
927,673 + MPMX19_04550 0.86 +0.7
927,673 + MPMX19_04550 0.86 +0.2
927,673 + MPMX19_04550 0.86 -0.3
927,673 + MPMX19_04550 0.86 -0.3
927,673 + MPMX19_04550 0.86 +0.6
927,673 + MPMX19_04550 0.86 -1.4
927,673 + MPMX19_04550 0.86 +1.3
927,674 - MPMX19_04550 0.86 +0.0
927,740 - -0.9
928,017 - MPMX19_04551 0.34 -0.3
928,193 + MPMX19_04551 0.59 +0.7
928,194 - MPMX19_04551 0.59 -1.0
928,194 - MPMX19_04551 0.59 +1.2
928,463 + +1.2
928,464 - -0.3
928,464 - -1.0
928,464 - +0.1
928,472 + +0.3
928,473 - -0.2
928,473 - -1.8
928,556 + -1.1
928,556 + +0.3
928,556 + -0.1
928,556 + +0.1
928,867 + MPMX19_04552 0.23 -0.4
928,867 + MPMX19_04552 0.23 +1.2
928,868 - MPMX19_04552 0.23 -0.7
928,868 - MPMX19_04552 0.23 -1.0
928,904 - MPMX19_04552 0.26 -1.4
928,904 - MPMX19_04552 0.26 -1.8
928,904 - MPMX19_04552 0.26 -1.4
928,981 + MPMX19_04552 0.31 +0.4
928,981 + MPMX19_04552 0.31 +0.4
928,981 + MPMX19_04552 0.31 +0.7
928,982 - MPMX19_04552 0.31 +0.0
928,999 + MPMX19_04552 0.32 -1.1
928,999 + MPMX19_04552 0.32 +0.2
928,999 + MPMX19_04552 0.32 -0.6
928,999 + MPMX19_04552 0.32 -1.0
928,999 + MPMX19_04552 0.32 +1.4
928,999 + MPMX19_04552 0.32 +0.2
928,999 + MPMX19_04552 0.32 -0.5
928,999 + MPMX19_04552 0.32 -0.6
928,999 + MPMX19_04552 0.32 +0.0
928,999 + MPMX19_04552 0.32 -0.2
928,999 + MPMX19_04552 0.32 +3.0
928,999 + MPMX19_04552 0.32 +1.0
929,000 - MPMX19_04552 0.32 -0.1
929,000 - MPMX19_04552 0.32 -0.4
929,000 - MPMX19_04552 0.32 -1.0
929,000 - MPMX19_04552 0.32 +0.3
929,000 - MPMX19_04552 0.32 -0.1
929,000 - MPMX19_04552 0.32 -1.8
929,000 - MPMX19_04552 0.32 -0.8
929,000 - MPMX19_04552 0.32 +0.9
929,000 - MPMX19_04552 0.32 +0.0
929,000 - MPMX19_04552 0.32 +0.4
929,000 - MPMX19_04552 0.32 -1.8
929,000 - MPMX19_04552 0.32 +0.0
929,008 + MPMX19_04552 0.33 -0.1
929,008 + MPMX19_04552 0.33 -0.1
929,008 + MPMX19_04552 0.33 +0.1
929,008 + MPMX19_04552 0.33 -0.2
929,009 - MPMX19_04552 0.33 -0.6
929,009 - MPMX19_04552 0.33 -0.3
929,009 - MPMX19_04552 0.33 +0.1
929,009 - MPMX19_04552 0.33 +1.0
929,009 - MPMX19_04552 0.33 -0.9
929,162 - MPMX19_04552 0.44 -0.1
929,320 + MPMX19_04552 0.55 +0.3
929,320 + MPMX19_04552 0.55 -0.9
929,320 + MPMX19_04552 0.55 -1.3
929,320 + MPMX19_04552 0.55 -0.5
929,320 + MPMX19_04552 0.55 +0.0
929,321 - MPMX19_04552 0.55 +0.4
929,321 - MPMX19_04552 0.55 +1.3
929,321 - MPMX19_04552 0.55 -0.5
929,341 + MPMX19_04552 0.56 +0.2
929,341 + MPMX19_04552 0.56 +0.0
929,341 + MPMX19_04552 0.56 -0.3
929,341 + MPMX19_04552 0.56 +0.6
929,341 + MPMX19_04552 0.56 +0.1
929,341 + MPMX19_04552 0.56 -1.6
929,341 + MPMX19_04552 0.56 -0.7
929,341 + MPMX19_04552 0.56 -1.4
929,341 + MPMX19_04552 0.56 +2.8
929,341 + MPMX19_04552 0.56 +0.9
929,341 + MPMX19_04552 0.56 +0.6
929,341 + MPMX19_04552 0.56 -0.1
929,341 + MPMX19_04552 0.56 -0.9
929,341 + MPMX19_04552 0.56 -0.8
929,341 + MPMX19_04552 0.56 -2.1
929,341 + MPMX19_04552 0.56 -0.1
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 -1.0
929,342 - MPMX19_04552 0.56 -0.6
929,342 - MPMX19_04552 0.56 +0.5
929,342 - MPMX19_04552 0.56 -0.4
929,342 - MPMX19_04552 0.56 -0.4
929,342 - MPMX19_04552 0.56 +0.3
929,342 - MPMX19_04552 0.56 +0.3
929,342 - MPMX19_04552 0.56 +1.3
929,342 - MPMX19_04552 0.56 -0.3
929,342 - MPMX19_04552 0.56 -1.8
929,342 - MPMX19_04552 0.56 +0.4
929,342 - MPMX19_04552 0.56 +0.0
929,342 - MPMX19_04552 0.56 -0.4
929,342 - MPMX19_04552 0.56 +0.0
929,342 - MPMX19_04552 0.56 -1.0
929,342 - MPMX19_04552 0.56 -0.4
929,342 - MPMX19_04552 0.56 +1.5
929,342 - MPMX19_04552 0.56 +1.0

Or see this region's nucleotide sequence