Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04547

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04545 and MPMX19_04546 are separated by 119 nucleotidesMPMX19_04546 and MPMX19_04547 are separated by 63 nucleotidesMPMX19_04547 and MPMX19_04548 are separated by 137 nucleotides MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206 _04545 MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054 _04546 MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087 _04547 MPMX19_04548: MPMX19_04548 - 4-hydroxy-tetrahydrodipicolinate synthase, at 925,225 to 926,118 _04548 Position (kb) 922 923 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 921.134 kb on - strand, within MPMX19_04545at 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.206 kb on + strandat 921.207 kb on - strandat 921.207 kb on - strandat 921.207 kb on - strandat 921.207 kb on - strandat 921.207 kb on - strandat 921.207 kb on - strandat 921.297 kb on + strandat 921.864 kb on + strand, within MPMX19_04546at 922.023 kb on + strandat 922.023 kb on + strandat 922.023 kb on + strandat 922.023 kb on + strandat 922.023 kb on + strandat 922.024 kb on - strandat 922.024 kb on - strandat 922.024 kb on - strandat 922.024 kb on - strandat 922.024 kb on - strandat 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.770 kb on + strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.771 kb on - strand, within MPMX19_04547at 922.812 kb on + strand, within MPMX19_04547at 922.812 kb on + strand, within MPMX19_04547at 922.813 kb on - strand, within MPMX19_04547at 922.813 kb on - strand, within MPMX19_04547at 922.896 kb on + strand, within MPMX19_04547at 922.896 kb on + strand, within MPMX19_04547at 922.897 kb on - strand, within MPMX19_04547at 923.205 kb on + strand, within MPMX19_04547at 923.205 kb on + strand, within MPMX19_04547at 923.205 kb on + strand, within MPMX19_04547at 923.205 kb on + strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.206 kb on - strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.208 kb on + strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.209 kb on - strand, within MPMX19_04547at 923.397 kb on + strand, within MPMX19_04547at 923.397 kb on + strand, within MPMX19_04547at 923.397 kb on + strand, within MPMX19_04547at 923.397 kb on + strand, within MPMX19_04547at 923.398 kb on - strand, within MPMX19_04547at 923.398 kb on - strand, within MPMX19_04547at 923.398 kb on - strand, within MPMX19_04547at 923.463 kb on + strand, within MPMX19_04547at 923.464 kb on - strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.631 kb on + strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.632 kb on - strand, within MPMX19_04547at 923.862 kb on + strand, within MPMX19_04547at 923.862 kb on + strand, within MPMX19_04547at 923.941 kb on - strand, within MPMX19_04547at 924.019 kb on - strand, within MPMX19_04547at 924.019 kb on - strand, within MPMX19_04547at 924.019 kb on - strand, within MPMX19_04547at 924.019 kb on - strand, within MPMX19_04547at 924.123 kb on + strand, within MPMX19_04547at 924.402 kb on + strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.438 kb on + strand, within MPMX19_04547at 924.439 kb on - strand, within MPMX19_04547at 924.621 kb on + strand, within MPMX19_04547at 924.621 kb on + strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.803 kb on - strandat 924.921 kb on + strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.958 kb on - strandat 924.958 kb on - strandat 925.032 kb on + strandat 925.032 kb on + strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.143 kb on + strandat 925.246 kb on + strandat 925.246 kb on + strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.549 kb on + strand, within MPMX19_04548at 925.549 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.588 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.927 kb on + strand, within MPMX19_04548at 925.927 kb on + strand, within MPMX19_04548at 925.928 kb on - strand, within MPMX19_04548at 925.928 kb on - strand, within MPMX19_04548at 925.973 kb on - strand, within MPMX19_04548

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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921,134 - MPMX19_04545 0.89 -0.4
921,206 + +0.9
921,206 + -0.6
921,206 + +0.6
921,206 + +1.0
921,206 + +0.7
921,206 + +0.1
921,206 + +0.4
921,206 + +0.6
921,207 - -1.1
921,207 - -0.8
921,207 - -0.7
921,207 - -0.4
921,207 - -0.7
921,207 - +0.0
921,297 + -1.4
921,864 + MPMX19_04546 0.74 +0.6
922,023 + +1.0
922,023 + +0.5
922,023 + +0.0
922,023 + -0.8
922,023 + +1.0
922,024 - -0.5
922,024 - -0.6
922,024 - +0.3
922,024 - +0.4
922,024 - +0.2
922,770 + MPMX19_04547 0.22 +0.0
922,770 + MPMX19_04547 0.22 -0.7
922,770 + MPMX19_04547 0.22 +0.3
922,770 + MPMX19_04547 0.22 -0.3
922,770 + MPMX19_04547 0.22 -0.6
922,770 + MPMX19_04547 0.22 -2.3
922,770 + MPMX19_04547 0.22 -0.8
922,770 + MPMX19_04547 0.22 -1.1
922,771 - MPMX19_04547 0.22 +0.7
922,771 - MPMX19_04547 0.22 -1.4
922,771 - MPMX19_04547 0.22 -1.0
922,771 - MPMX19_04547 0.22 -2.6
922,771 - MPMX19_04547 0.22 +0.1
922,771 - MPMX19_04547 0.22 -0.4
922,771 - MPMX19_04547 0.22 +0.4
922,771 - MPMX19_04547 0.22 -0.6
922,771 - MPMX19_04547 0.22 -0.5
922,771 - MPMX19_04547 0.22 +0.0
922,771 - MPMX19_04547 0.22 +1.4
922,771 - MPMX19_04547 0.22 +0.7
922,771 - MPMX19_04547 0.22 -0.4
922,771 - MPMX19_04547 0.22 -0.7
922,771 - MPMX19_04547 0.22 +0.2
922,771 - MPMX19_04547 0.22 +0.4
922,771 - MPMX19_04547 0.22 -0.1
922,771 - MPMX19_04547 0.22 -1.4
922,771 - MPMX19_04547 0.22 -0.6
922,771 - MPMX19_04547 0.22 -0.4
922,771 - MPMX19_04547 0.22 -1.0
922,812 + MPMX19_04547 0.23 +0.3
922,812 + MPMX19_04547 0.23 +0.6
922,813 - MPMX19_04547 0.23 -0.3
922,813 - MPMX19_04547 0.23 +0.7
922,896 + MPMX19_04547 0.26 -1.0
922,896 + MPMX19_04547 0.26 -0.1
922,897 - MPMX19_04547 0.26 -0.6
923,205 + MPMX19_04547 0.37 +0.1
923,205 + MPMX19_04547 0.37 -1.0
923,205 + MPMX19_04547 0.37 -0.8
923,205 + MPMX19_04547 0.37 -0.2
923,206 - MPMX19_04547 0.37 -2.1
923,206 - MPMX19_04547 0.37 -1.0
923,206 - MPMX19_04547 0.37 +1.2
923,206 - MPMX19_04547 0.37 -0.6
923,206 - MPMX19_04547 0.37 +1.4
923,206 - MPMX19_04547 0.37 -1.1
923,206 - MPMX19_04547 0.37 +0.8
923,206 - MPMX19_04547 0.37 -1.8
923,208 + MPMX19_04547 0.37 -0.4
923,208 + MPMX19_04547 0.37 -1.1
923,208 + MPMX19_04547 0.37 -0.3
923,208 + MPMX19_04547 0.37 +0.6
923,208 + MPMX19_04547 0.37 -1.5
923,208 + MPMX19_04547 0.37 -0.8
923,208 + MPMX19_04547 0.37 -0.4
923,209 - MPMX19_04547 0.37 +0.8
923,209 - MPMX19_04547 0.37 -0.3
923,209 - MPMX19_04547 0.37 -0.1
923,209 - MPMX19_04547 0.37 -2.8
923,209 - MPMX19_04547 0.37 +0.0
923,209 - MPMX19_04547 0.37 +1.2
923,209 - MPMX19_04547 0.37 -2.8
923,397 + MPMX19_04547 0.43 -0.7
923,397 + MPMX19_04547 0.43 -0.6
923,397 + MPMX19_04547 0.43 +0.0
923,397 + MPMX19_04547 0.43 -0.8
923,398 - MPMX19_04547 0.43 -0.1
923,398 - MPMX19_04547 0.43 +0.7
923,398 - MPMX19_04547 0.43 -0.7
923,463 + MPMX19_04547 0.45 +0.1
923,464 - MPMX19_04547 0.45 -0.6
923,631 + MPMX19_04547 0.51 +0.3
923,631 + MPMX19_04547 0.51 -2.0
923,631 + MPMX19_04547 0.51 +0.7
923,631 + MPMX19_04547 0.51 -0.1
923,631 + MPMX19_04547 0.51 +1.9
923,631 + MPMX19_04547 0.51 -1.6
923,632 - MPMX19_04547 0.51 -1.6
923,632 - MPMX19_04547 0.51 +2.3
923,632 - MPMX19_04547 0.51 -0.6
923,632 - MPMX19_04547 0.51 -0.9
923,632 - MPMX19_04547 0.51 -0.1
923,632 - MPMX19_04547 0.51 +1.0
923,632 - MPMX19_04547 0.51 -1.1
923,632 - MPMX19_04547 0.51 +1.0
923,632 - MPMX19_04547 0.51 +0.8
923,632 - MPMX19_04547 0.51 +0.4
923,632 - MPMX19_04547 0.51 -1.3
923,632 - MPMX19_04547 0.51 -0.1
923,862 + MPMX19_04547 0.59 -0.3
923,862 + MPMX19_04547 0.59 -1.3
923,941 - MPMX19_04547 0.61 -0.9
924,019 - MPMX19_04547 0.64 -0.3
924,019 - MPMX19_04547 0.64 -1.3
924,019 - MPMX19_04547 0.64 -1.7
924,019 - MPMX19_04547 0.64 +1.0
924,123 + MPMX19_04547 0.68 -0.9
924,402 + MPMX19_04547 0.77 -0.3
924,403 - MPMX19_04547 0.77 -0.7
924,403 - MPMX19_04547 0.77 +1.0
924,403 - MPMX19_04547 0.77 -2.3
924,438 + MPMX19_04547 0.78 -0.4
924,439 - MPMX19_04547 0.78 +1.8
924,621 + MPMX19_04547 0.84 -0.3
924,621 + MPMX19_04547 0.84 -0.3
924,622 - MPMX19_04547 0.84 -2.2
924,622 - MPMX19_04547 0.84 -1.6
924,622 - MPMX19_04547 0.84 +0.3
924,622 - MPMX19_04547 0.84 -1.9
924,622 - MPMX19_04547 0.84 -0.6
924,803 - +0.1
924,921 + -1.1
924,922 - +0.9
924,922 - +0.0
924,958 - -0.9
924,958 - -2.0
925,032 + -0.5
925,032 + -0.6
925,033 - -1.3
925,033 - +0.5
925,033 - -0.7
925,033 - +0.3
925,033 - +0.0
925,143 + -1.4
925,246 + -1.0
925,246 + -0.6
925,247 - -1.8
925,247 - -1.1
925,247 - +0.1
925,247 - -0.4
925,549 + MPMX19_04548 0.36 -1.0
925,549 + MPMX19_04548 0.36 -1.6
925,552 + MPMX19_04548 0.37 +0.7
925,552 + MPMX19_04548 0.37 -1.3
925,552 + MPMX19_04548 0.37 -0.8
925,552 + MPMX19_04548 0.37 -0.1
925,552 + MPMX19_04548 0.37 -1.4
925,553 - MPMX19_04548 0.37 -1.6
925,553 - MPMX19_04548 0.37 -0.3
925,553 - MPMX19_04548 0.37 -2.2
925,553 - MPMX19_04548 0.37 -0.6
925,553 - MPMX19_04548 0.37 +0.0
925,588 + MPMX19_04548 0.41 -1.7
925,630 + MPMX19_04548 0.45 +1.4
925,630 + MPMX19_04548 0.45 -0.5
925,630 + MPMX19_04548 0.45 +0.4
925,630 + MPMX19_04548 0.45 -0.2
925,630 + MPMX19_04548 0.45 -0.5
925,631 - MPMX19_04548 0.45 -1.4
925,631 - MPMX19_04548 0.45 -1.9
925,631 - MPMX19_04548 0.45 +1.0
925,631 - MPMX19_04548 0.45 +0.1
925,631 - MPMX19_04548 0.45 -1.3
925,631 - MPMX19_04548 0.45 +0.1
925,631 - MPMX19_04548 0.45 +0.1
925,631 - MPMX19_04548 0.45 -0.2
925,631 - MPMX19_04548 0.45 -1.7
925,631 - MPMX19_04548 0.45 +0.9
925,631 - MPMX19_04548 0.45 +1.0
925,631 - MPMX19_04548 0.45 +0.6
925,631 - MPMX19_04548 0.45 +1.0
925,631 - MPMX19_04548 0.45 -0.6
925,631 - MPMX19_04548 0.45 -0.6
925,631 - MPMX19_04548 0.45 -0.9
925,708 + MPMX19_04548 0.54 -0.7
925,708 + MPMX19_04548 0.54 +0.2
925,708 + MPMX19_04548 0.54 -0.3
925,708 + MPMX19_04548 0.54 -2.0
925,708 + MPMX19_04548 0.54 +0.0
925,708 + MPMX19_04548 0.54 -0.8
925,709 - MPMX19_04548 0.54 -1.0
925,709 - MPMX19_04548 0.54 +0.6
925,709 - MPMX19_04548 0.54 -0.3
925,709 - MPMX19_04548 0.54 +1.7
925,709 - MPMX19_04548 0.54 -0.8
925,709 - MPMX19_04548 0.54 -1.0
925,709 - MPMX19_04548 0.54 +0.6
925,709 - MPMX19_04548 0.54 +1.3
925,709 - MPMX19_04548 0.54 -1.3
925,927 + MPMX19_04548 0.79 -0.2
925,927 + MPMX19_04548 0.79 -0.8
925,928 - MPMX19_04548 0.79 -0.8
925,928 - MPMX19_04548 0.79 -0.8
925,973 - MPMX19_04548 0.84 -0.8

Or see this region's nucleotide sequence