Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04526

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04525 and MPMX19_04526 are separated by 25 nucleotidesMPMX19_04526 and MPMX19_04527 are separated by 21 nucleotides MPMX19_04525: MPMX19_04525 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 898,394 to 899,461 _04525 MPMX19_04526: MPMX19_04526 - Short-chain-enoyl-CoA hydratase, at 899,487 to 900,320 _04526 MPMX19_04527: MPMX19_04527 - IS5 family transposase IS4811, at 900,342 to 901,292 _04527 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 898.655 kb on + strand, within MPMX19_04525at 898.655 kb on + strand, within MPMX19_04525at 898.655 kb on + strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 899.310 kb on - strand, within MPMX19_04525at 899.476 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.517 kb on - strandat 899.517 kb on - strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.247 kb on - strandat 900.247 kb on - strandat 900.262 kb on - strandat 900.262 kb on - strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.461 kb on - strand, within MPMX19_04527at 900.507 kb on + strand, within MPMX19_04527at 900.508 kb on - strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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898,655 + MPMX19_04525 0.24 +0.3
898,655 + MPMX19_04525 0.24 +0.4
898,655 + MPMX19_04525 0.24 -0.4
898,656 - MPMX19_04525 0.25 +0.4
898,656 - MPMX19_04525 0.25 +1.1
898,656 - MPMX19_04525 0.25 -0.3
898,656 - MPMX19_04525 0.25 +1.0
898,656 - MPMX19_04525 0.25 -0.7
898,656 - MPMX19_04525 0.25 -1.3
898,656 - MPMX19_04525 0.25 -0.9
898,970 + MPMX19_04525 0.54 -0.3
898,970 + MPMX19_04525 0.54 +1.3
898,970 + MPMX19_04525 0.54 +1.3
898,970 + MPMX19_04525 0.54 +0.2
898,970 + MPMX19_04525 0.54 -1.3
898,970 + MPMX19_04525 0.54 -0.6
898,970 + MPMX19_04525 0.54 +0.6
898,970 + MPMX19_04525 0.54 -2.0
898,970 + MPMX19_04525 0.54 +0.3
898,970 + MPMX19_04525 0.54 -0.5
898,970 + MPMX19_04525 0.54 +0.1
898,971 - MPMX19_04525 0.54 +0.6
898,971 - MPMX19_04525 0.54 -0.2
898,971 - MPMX19_04525 0.54 +0.1
898,971 - MPMX19_04525 0.54 -1.9
898,971 - MPMX19_04525 0.54 -0.1
898,971 - MPMX19_04525 0.54 -1.3
898,971 - MPMX19_04525 0.54 -0.2
898,971 - MPMX19_04525 0.54 -2.4
899,310 - MPMX19_04525 0.86 -0.3
899,476 + -0.4
899,516 + +0.6
899,516 + -1.2
899,516 + +1.6
899,516 + -0.5
899,517 - +0.1
899,517 - +1.3
900,246 + -0.6
900,246 + +2.5
900,246 + +0.5
900,246 + +1.0
900,247 - +1.4
900,247 - -0.2
900,262 - -1.3
900,262 - -1.0
900,397 + -1.7
900,397 + -1.4
900,397 + -1.2
900,398 - +0.4
900,398 - +0.0
900,398 - +0.2
900,398 - +0.4
900,398 - -0.2
900,398 - +0.4
900,398 - -1.1
900,461 - MPMX19_04527 0.13 +0.0
900,507 + MPMX19_04527 0.17 +0.8
900,508 - MPMX19_04527 0.17 +1.0
900,547 + MPMX19_04527 0.22 -2.4
900,547 + MPMX19_04527 0.22 -0.6
900,547 + MPMX19_04527 0.22 -1.9
900,548 - MPMX19_04527 0.22 -0.9
900,548 - MPMX19_04527 0.22 -1.9
900,548 - MPMX19_04527 0.22 +0.9
900,548 - MPMX19_04527 0.22 +0.0
900,548 - MPMX19_04527 0.22 -1.1
900,548 - MPMX19_04527 0.22 -1.3
900,548 - MPMX19_04527 0.22 -0.6
900,548 - MPMX19_04527 0.22 -0.3
900,756 + MPMX19_04527 0.44 +0.3
900,756 + MPMX19_04527 0.44 +0.9
900,756 + MPMX19_04527 0.44 +0.0
901,171 + MPMX19_04527 0.87 +0.6
901,171 + MPMX19_04527 0.87 -0.8
901,171 + MPMX19_04527 0.87 -0.3
901,171 + MPMX19_04527 0.87 -1.8
901,172 - MPMX19_04527 0.87 +0.8
901,172 - MPMX19_04527 0.87 -0.6
901,172 - MPMX19_04527 0.87 +0.3
901,172 - MPMX19_04527 0.87 -0.3
901,172 - MPMX19_04527 0.87 -1.0
901,172 - MPMX19_04527 0.87 -1.0
901,172 - MPMX19_04527 0.87 -0.7

Or see this region's nucleotide sequence