Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04477

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04476 and MPMX19_04477 are separated by 641 nucleotidesMPMX19_04477 and MPMX19_04478 are separated by 60 nucleotidesMPMX19_04478 and MPMX19_04479 are separated by 59 nucleotides MPMX19_04476: MPMX19_04476 - hypothetical protein, at 843,718 to 844,134 _04476 MPMX19_04477: MPMX19_04477 - hypothetical protein, at 844,776 to 845,339 _04477 MPMX19_04478: MPMX19_04478 - hypothetical protein, at 845,400 to 846,236 _04478 MPMX19_04479: MPMX19_04479 - N-ethylmaleimide reductase, at 846,296 to 847,378 _04479 Position (kb) 844 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.036 kb on + strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.037 kb on - strand, within MPMX19_04476at 844.052 kb on + strand, within MPMX19_04476at 844.052 kb on + strand, within MPMX19_04476at 844.052 kb on + strand, within MPMX19_04476at 844.052 kb on + strand, within MPMX19_04476at 844.053 kb on - strand, within MPMX19_04476at 844.053 kb on - strand, within MPMX19_04476at 844.053 kb on - strand, within MPMX19_04476at 844.053 kb on - strand, within MPMX19_04476at 844.053 kb on - strand, within MPMX19_04476at 844.136 kb on + strandat 844.162 kb on + strandat 844.162 kb on + strandat 844.162 kb on + strandat 844.162 kb on + strandat 844.163 kb on - strandat 844.163 kb on - strandat 844.163 kb on - strandat 844.163 kb on - strandat 844.183 kb on + strandat 844.184 kb on - strandat 844.194 kb on + strandat 844.194 kb on + strandat 844.194 kb on + strandat 844.195 kb on - strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.207 kb on + strandat 844.208 kb on - strandat 844.208 kb on - strandat 844.208 kb on - strandat 844.208 kb on - strandat 844.257 kb on + strandat 844.258 kb on - strandat 844.258 kb on - strandat 844.312 kb on + strandat 844.364 kb on + strandat 844.551 kb on + strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.703 kb on + strandat 844.703 kb on + strandat 844.703 kb on + strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.706 kb on - strandat 844.706 kb on - strandat 844.777 kb on + strandat 844.777 kb on + strandat 844.777 kb on + strandat 844.778 kb on - strandat 844.778 kb on - strandat 844.778 kb on - strandat 845.092 kb on + strand, within MPMX19_04477at 845.092 kb on + strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.104 kb on + strand, within MPMX19_04477at 845.104 kb on + strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.198 kb on - strand, within MPMX19_04477at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.506 kb on - strand, within MPMX19_04478at 845.506 kb on - strand, within MPMX19_04478at 845.904 kb on + strand, within MPMX19_04478at 845.904 kb on + strand, within MPMX19_04478at 845.905 kb on - strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.324 kb on - strandat 846.324 kb on - strandat 846.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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844,036 + MPMX19_04476 0.76 -0.5
844,036 + MPMX19_04476 0.76 -1.6
844,036 + MPMX19_04476 0.76 -2.4
844,036 + MPMX19_04476 0.76 +0.0
844,036 + MPMX19_04476 0.76 -0.1
844,036 + MPMX19_04476 0.76 -0.4
844,036 + MPMX19_04476 0.76 -1.0
844,036 + MPMX19_04476 0.76 -0.8
844,036 + MPMX19_04476 0.76 +3.0
844,036 + MPMX19_04476 0.76 -1.4
844,036 + MPMX19_04476 0.76 -1.1
844,037 - MPMX19_04476 0.76 -0.8
844,037 - MPMX19_04476 0.76 -0.1
844,037 - MPMX19_04476 0.76 +1.0
844,037 - MPMX19_04476 0.76 +0.1
844,037 - MPMX19_04476 0.76 +0.1
844,037 - MPMX19_04476 0.76 -0.3
844,037 - MPMX19_04476 0.76 -0.1
844,037 - MPMX19_04476 0.76 -1.3
844,037 - MPMX19_04476 0.76 -0.3
844,037 - MPMX19_04476 0.76 -0.1
844,037 - MPMX19_04476 0.76 -0.4
844,052 + MPMX19_04476 0.80 +1.6
844,052 + MPMX19_04476 0.80 -3.5
844,052 + MPMX19_04476 0.80 -0.7
844,052 + MPMX19_04476 0.80 +0.5
844,053 - MPMX19_04476 0.80 +1.4
844,053 - MPMX19_04476 0.80 +0.2
844,053 - MPMX19_04476 0.80 +0.2
844,053 - MPMX19_04476 0.80 +0.7
844,053 - MPMX19_04476 0.80 -0.8
844,136 + -0.8
844,162 + -1.0
844,162 + -1.7
844,162 + -0.1
844,162 + -1.1
844,163 - +0.1
844,163 - -2.0
844,163 - -0.8
844,163 - -0.3
844,183 + -1.2
844,184 - -0.2
844,194 + +0.2
844,194 + -1.1
844,194 + -0.6
844,195 - -0.3
844,207 + -0.7
844,207 + +0.3
844,207 + -1.3
844,207 + -0.8
844,207 + +1.2
844,207 + -1.6
844,207 + -2.4
844,207 + +1.4
844,208 - +0.4
844,208 - +0.9
844,208 - -0.7
844,208 - +0.5
844,257 + -0.2
844,258 - -0.9
844,258 - -0.5
844,312 + -2.7
844,364 + -0.3
844,551 + -0.3
844,552 - -0.6
844,552 - -0.7
844,552 - +0.0
844,552 - -0.6
844,552 - -1.4
844,703 + +0.8
844,703 + +0.9
844,703 + -0.4
844,704 - -1.1
844,704 - -0.3
844,704 - +1.6
844,704 - +0.4
844,704 - -1.0
844,704 - +1.5
844,704 - +0.6
844,704 - +1.2
844,706 - +0.1
844,706 - -2.1
844,777 + +0.9
844,777 + -0.1
844,777 + -0.8
844,778 - -1.2
844,778 - -1.8
844,778 - -0.7
845,092 + MPMX19_04477 0.56 -0.8
845,092 + MPMX19_04477 0.56 +0.2
845,093 - MPMX19_04477 0.56 -0.4
845,093 - MPMX19_04477 0.56 +1.0
845,093 - MPMX19_04477 0.56 +0.4
845,104 + MPMX19_04477 0.58 -1.3
845,104 + MPMX19_04477 0.58 -0.5
845,105 - MPMX19_04477 0.58 -0.9
845,105 - MPMX19_04477 0.58 -1.0
845,105 - MPMX19_04477 0.58 +0.0
845,105 - MPMX19_04477 0.58 +0.2
845,198 - MPMX19_04477 0.75 -0.3
845,505 + MPMX19_04478 0.13 +0.3
845,505 + MPMX19_04478 0.13 +0.2
845,505 + MPMX19_04478 0.13 -1.9
845,505 + MPMX19_04478 0.13 -1.3
845,505 + MPMX19_04478 0.13 +0.4
845,506 - MPMX19_04478 0.13 +1.5
845,506 - MPMX19_04478 0.13 -0.3
845,904 + MPMX19_04478 0.60 -0.9
845,904 + MPMX19_04478 0.60 -0.6
845,905 - MPMX19_04478 0.60 -2.1
845,976 + MPMX19_04478 0.69 -0.3
845,976 + MPMX19_04478 0.69 -0.3
845,976 + MPMX19_04478 0.69 +0.4
845,976 + MPMX19_04478 0.69 -0.3
845,976 + MPMX19_04478 0.69 +0.3
845,976 + MPMX19_04478 0.69 +1.0
845,976 + MPMX19_04478 0.69 +1.2
845,976 + MPMX19_04478 0.69 -0.1
845,976 + MPMX19_04478 0.69 -0.1
845,976 + MPMX19_04478 0.69 +0.9
845,976 + MPMX19_04478 0.69 -0.2
845,977 - MPMX19_04478 0.69 +2.6
845,977 - MPMX19_04478 0.69 +0.4
845,977 - MPMX19_04478 0.69 -0.8
845,977 - MPMX19_04478 0.69 +1.5
845,977 - MPMX19_04478 0.69 -1.4
845,977 - MPMX19_04478 0.69 -0.8
845,977 - MPMX19_04478 0.69 -0.4
845,977 - MPMX19_04478 0.69 -1.0
845,977 - MPMX19_04478 0.69 -0.4
845,977 - MPMX19_04478 0.69 -1.0
845,977 - MPMX19_04478 0.69 -1.6
845,977 - MPMX19_04478 0.69 +0.2
845,977 - MPMX19_04478 0.69 +0.0
846,159 + -1.7
846,159 + +0.2
846,159 + -0.2
846,159 + +3.0
846,159 + -0.8
846,159 + -0.3
846,159 + -1.7
846,159 + -0.5
846,159 + -0.2
846,160 - +0.9
846,160 - +0.0
846,160 - -2.1
846,160 - +2.4
846,160 - +0.8
846,160 - -0.7
846,160 - -1.0
846,160 - +0.0
846,324 - +0.6
846,324 - -1.4
846,324 - +0.0

Or see this region's nucleotide sequence