Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04473 and MPMX19_04474 are separated by 234 nucleotides MPMX19_04474 and MPMX19_04475 are separated by 228 nucleotides
MPMX19_04473: MPMX19_04473 - IS481 family transposase ISBxe4, at 840,560 to 841,462
_04473
MPMX19_04474: MPMX19_04474 - hypothetical protein, at 841,697 to 842,059
_04474
MPMX19_04475: MPMX19_04475 - IS701 family transposase ISPye15, at 842,288 to 843,532
_04475
Position (kb) 841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.181 kb on - strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.501 kb on + strand at 841.502 kb on - strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.592 kb on - strand at 841.592 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.825 kb on - strand, within MPMX19_04474 at 841.879 kb on + strand, within MPMX19_04474 at 841.880 kb on - strand, within MPMX19_04474 at 841.964 kb on + strand, within MPMX19_04474 at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.107 kb on - strand at 842.113 kb on + strand at 842.113 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.201 kb on + strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.380 kb on + strand at 842.558 kb on + strand, within MPMX19_04475 at 842.558 kb on + strand, within MPMX19_04475 at 842.566 kb on + strand, within MPMX19_04475 at 842.566 kb on + strand, within MPMX19_04475 at 842.566 kb on + strand, within MPMX19_04475 at 842.566 kb on + strand, within MPMX19_04475 at 842.566 kb on + strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.567 kb on - strand, within MPMX19_04475 at 842.624 kb on + strand, within MPMX19_04475 at 842.715 kb on + strand, within MPMX19_04475 at 842.715 kb on + strand, within MPMX19_04475 at 842.715 kb on + strand, within MPMX19_04475 at 842.716 kb on - strand, within MPMX19_04475 at 842.716 kb on - strand, within MPMX19_04475 at 842.716 kb on - strand, within MPMX19_04475 at 842.716 kb on - strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.984 kb on + strand, within MPMX19_04475 at 842.985 kb on - strand, within MPMX19_04475
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 840,786 + MPMX19_04473 0.25 +1.2 840,786 + MPMX19_04473 0.25 -0.1 840,786 + MPMX19_04473 0.25 +0.4 840,787 - MPMX19_04473 0.25 +0.2 840,787 - MPMX19_04473 0.25 -0.1 840,787 - MPMX19_04473 0.25 -0.6 840,787 - MPMX19_04473 0.25 +0.4 840,787 - MPMX19_04473 0.25 -1.3 840,787 - MPMX19_04473 0.25 +0.6 840,787 - MPMX19_04473 0.25 +0.0 840,798 + MPMX19_04473 0.26 +1.6 840,798 + MPMX19_04473 0.26 +0.4 840,798 + MPMX19_04473 0.26 +0.4 840,799 - MPMX19_04473 0.26 -1.1 840,799 - MPMX19_04473 0.26 -0.6 840,799 - MPMX19_04473 0.26 -1.3 840,810 - MPMX19_04473 0.28 -0.2 840,810 - MPMX19_04473 0.28 -0.3 840,838 + MPMX19_04473 0.31 -1.6 840,838 + MPMX19_04473 0.31 -1.0 840,838 + MPMX19_04473 0.31 -1.9 840,838 + MPMX19_04473 0.31 -1.4 840,839 - MPMX19_04473 0.31 +0.0 840,839 - MPMX19_04473 0.31 -1.6 840,839 - MPMX19_04473 0.31 +1.0 840,839 - MPMX19_04473 0.31 -0.3 840,909 + MPMX19_04473 0.39 +2.0 840,909 + MPMX19_04473 0.39 -1.3 840,909 + MPMX19_04473 0.39 +0.0 840,909 + MPMX19_04473 0.39 -0.6 840,909 + MPMX19_04473 0.39 +0.8 840,909 + MPMX19_04473 0.39 +0.4 840,910 - MPMX19_04473 0.39 -1.6 840,910 - MPMX19_04473 0.39 +0.4 840,910 - MPMX19_04473 0.39 +0.6 841,086 - MPMX19_04473 0.58 -1.3 841,086 - MPMX19_04473 0.58 +0.4 841,086 - MPMX19_04473 0.58 -0.6 841,122 + MPMX19_04473 0.62 -1.6 841,122 + MPMX19_04473 0.62 +0.6 841,122 + MPMX19_04473 0.62 +0.3 841,122 + MPMX19_04473 0.62 +0.4 841,122 + MPMX19_04473 0.62 -1.1 841,122 + MPMX19_04473 0.62 -0.6 841,122 + MPMX19_04473 0.62 -1.1 841,122 + MPMX19_04473 0.62 -0.4 841,122 + MPMX19_04473 0.62 -1.7 841,122 + MPMX19_04473 0.62 -0.5 841,123 - MPMX19_04473 0.62 -0.3 841,123 - MPMX19_04473 0.62 -0.6 841,123 - MPMX19_04473 0.62 -1.0 841,123 - MPMX19_04473 0.62 -0.3 841,129 - MPMX19_04473 0.63 -2.0 841,129 - MPMX19_04473 0.63 +0.0 841,181 - MPMX19_04473 0.69 +0.3 841,206 + MPMX19_04473 0.72 +1.1 841,206 + MPMX19_04473 0.72 -0.4 841,206 + MPMX19_04473 0.72 -1.2 841,206 + MPMX19_04473 0.72 +0.6 841,206 + MPMX19_04473 0.72 -0.3 841,206 + MPMX19_04473 0.72 -0.8 841,206 + MPMX19_04473 0.72 -0.4 841,207 - MPMX19_04473 0.72 -0.4 841,207 - MPMX19_04473 0.72 -1.3 841,207 - MPMX19_04473 0.72 +0.4 841,207 - MPMX19_04473 0.72 -0.4 841,293 + MPMX19_04473 0.81 +0.4 841,293 + MPMX19_04473 0.81 +0.4 841,293 + MPMX19_04473 0.81 +2.0 841,293 + MPMX19_04473 0.81 -0.1 841,293 + MPMX19_04473 0.81 -1.1 841,293 + MPMX19_04473 0.81 -0.1 841,293 + MPMX19_04473 0.81 +0.4 841,293 + MPMX19_04473 0.81 +0.2 841,294 - MPMX19_04473 0.81 -1.0 841,294 - MPMX19_04473 0.81 -0.6 841,294 - MPMX19_04473 0.81 +0.5 841,501 + -0.3 841,502 - -1.8 841,591 + -1.3 841,591 + -0.1 841,591 + +0.9 841,591 + -1.6 841,591 + -1.9 841,591 + +0.4 841,592 - -0.3 841,592 - -0.7 841,649 - +0.0 841,649 - -1.1 841,649 - -1.6 841,649 - -0.6 841,798 + MPMX19_04474 0.28 -0.8 841,798 + MPMX19_04474 0.28 -0.4 841,798 + MPMX19_04474 0.28 +0.8 841,798 + MPMX19_04474 0.28 -2.7 841,798 + MPMX19_04474 0.28 -1.6 841,798 + MPMX19_04474 0.28 -0.1 841,798 + MPMX19_04474 0.28 -0.4 841,798 + MPMX19_04474 0.28 -1.1 841,798 + MPMX19_04474 0.28 -1.8 841,799 - MPMX19_04474 0.28 -1.1 841,799 - MPMX19_04474 0.28 -0.7 841,799 - MPMX19_04474 0.28 -0.8 841,799 - MPMX19_04474 0.28 -0.3 841,799 - MPMX19_04474 0.28 +1.4 841,825 - MPMX19_04474 0.35 +1.2 841,879 + MPMX19_04474 0.50 -0.4 841,880 - MPMX19_04474 0.50 -0.6 841,964 + MPMX19_04474 0.74 +1.0 842,048 + -3.1 842,048 + -1.4 842,048 + +0.4 842,048 + +0.5 842,048 + -1.1 842,048 + -1.7 842,048 + -1.0 842,048 + -1.7 842,048 + -0.6 842,049 - -1.8 842,049 - -1.4 842,049 - -0.6 842,049 - +0.3 842,049 - -1.1 842,075 + -0.1 842,075 + +0.7 842,075 + -0.9 842,075 + -1.0 842,075 + +0.0 842,075 + -1.3 842,075 + -2.1 842,075 + +0.1 842,075 + -1.0 842,075 + -1.3 842,075 + -0.9 842,075 + -0.2 842,075 + +0.2 842,075 + -0.4 842,076 - -0.4 842,076 - -0.8 842,076 - +0.1 842,076 - -0.6 842,076 - -1.3 842,076 - -0.3 842,076 - -0.6 842,076 - -1.1 842,076 - +0.9 842,076 - -1.9 842,076 - -0.2 842,076 - -0.3 842,106 + -0.2 842,106 + -0.1 842,106 + -0.4 842,107 - -0.3 842,113 + -0.1 842,113 + -1.0 842,128 + -0.4 842,128 + +0.0 842,128 + -0.6 842,128 + -0.7 842,128 + -1.3 842,128 + +1.3 842,128 + -1.8 842,128 + -2.4 842,128 + -0.6 842,128 + -1.0 842,128 + -0.3 842,128 + -2.4 842,129 - +0.8 842,129 - -1.8 842,129 - -1.6 842,129 - +0.0 842,129 - +0.3 842,129 - +0.0 842,129 - -0.6 842,129 - -1.1 842,129 - +0.2 842,129 - -1.7 842,129 - +0.3 842,129 - -2.1 842,132 + -0.6 842,132 + -0.3 842,132 + -0.7 842,132 + -0.1 842,132 + +1.0 842,132 + +1.2 842,132 + -1.0 842,132 + +0.0 842,132 + -0.5 842,133 - +0.7 842,133 - -0.6 842,133 - -2.1 842,133 - -1.0 842,133 - -0.3 842,133 - -0.1 842,133 - -1.4 842,133 - -1.1 842,133 - -1.2 842,133 - +0.2 842,133 - -0.7 842,133 - -0.6 842,133 - -1.3 842,133 - -1.6 842,133 - -0.7 842,133 - +0.0 842,133 - -1.3 842,134 + +0.5 842,134 + -0.5 842,134 + -0.8 842,134 + -1.4 842,134 + -1.2 842,134 + +0.6 842,135 - -0.8 842,135 - -0.0 842,135 - +0.9 842,135 - -0.1 842,135 - +0.6 842,185 + +0.0 842,185 + +0.8 842,185 + -0.1 842,185 + -1.0 842,186 - +0.3 842,186 - +1.3 842,186 - -0.8 842,201 + +0.9 842,202 - -1.1 842,202 - -0.7 842,202 - -0.3 842,202 - +0.1 842,202 - -0.4 842,380 + -1.3 842,558 + MPMX19_04475 0.22 +0.2 842,558 + MPMX19_04475 0.22 -0.8 842,566 + MPMX19_04475 0.22 -1.3 842,566 + MPMX19_04475 0.22 -0.3 842,566 + MPMX19_04475 0.22 -1.8 842,566 + MPMX19_04475 0.22 -0.2 842,566 + MPMX19_04475 0.22 -1.0 842,567 - MPMX19_04475 0.22 -0.5 842,567 - MPMX19_04475 0.22 -0.7 842,567 - MPMX19_04475 0.22 +1.2 842,567 - MPMX19_04475 0.22 -1.2 842,567 - MPMX19_04475 0.22 +1.2 842,567 - MPMX19_04475 0.22 -0.6 842,567 - MPMX19_04475 0.22 -0.1 842,624 + MPMX19_04475 0.27 -1.6 842,715 + MPMX19_04475 0.34 -1.5 842,715 + MPMX19_04475 0.34 +1.0 842,715 + MPMX19_04475 0.34 -0.2 842,716 - MPMX19_04475 0.34 -2.0 842,716 - MPMX19_04475 0.34 -0.1 842,716 - MPMX19_04475 0.34 -0.6 842,716 - MPMX19_04475 0.34 +0.3 842,865 + MPMX19_04475 0.46 -1.1 842,865 + MPMX19_04475 0.46 -0.3 842,865 + MPMX19_04475 0.46 +0.9 842,865 + MPMX19_04475 0.46 -1.0 842,865 + MPMX19_04475 0.46 -0.1 842,865 + MPMX19_04475 0.46 -2.1 842,865 + MPMX19_04475 0.46 -1.0 842,866 - MPMX19_04475 0.46 -2.6 842,866 - MPMX19_04475 0.46 -2.6 842,866 - MPMX19_04475 0.46 -0.4 842,913 + MPMX19_04475 0.50 +2.0 842,913 + MPMX19_04475 0.50 -0.3 842,913 + MPMX19_04475 0.50 +2.0 842,913 + MPMX19_04475 0.50 -0.3 842,913 + MPMX19_04475 0.50 -1.1 842,913 + MPMX19_04475 0.50 +0.2 842,914 - MPMX19_04475 0.50 +0.0 842,914 - MPMX19_04475 0.50 +0.4 842,914 - MPMX19_04475 0.50 -0.7 842,984 + MPMX19_04475 0.56 -0.9 842,985 - MPMX19_04475 0.56 +0.0
Or see this region's nucleotide sequence