Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04465 and MPMX19_04466 are separated by 168 nucleotides MPMX19_04466 and MPMX19_04467 are separated by 216 nucleotides MPMX19_04467 and MPMX19_04468 are separated by 206 nucleotides
MPMX19_04465: MPMX19_04465 - Pantothenate synthetase, at 832,642 to 833,550
_04465
MPMX19_04466: MPMX19_04466 - hypothetical protein, at 833,719 to 833,883
_04466
MPMX19_04467: MPMX19_04467 - tRNA-Val, at 834,100 to 834,174
_04467
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.220 kb on - strand, within MPMX19_04465 at 833.635 kb on + strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.727 kb on + strand at 833.747 kb on + strand, within MPMX19_04466 at 833.747 kb on + strand, within MPMX19_04466 at 833.748 kb on + strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.874 kb on + strand at 833.928 kb on + strand at 833.928 kb on + strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.990 kb on + strand at 833.990 kb on + strand at 833.991 kb on - strand at 833.991 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 835.006 kb on - strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 833,195 + MPMX19_04465 0.61 -0.1 833,195 + MPMX19_04465 0.61 +0.6 833,195 + MPMX19_04465 0.61 +0.4 833,195 + MPMX19_04465 0.61 -0.3 833,195 + MPMX19_04465 0.61 -0.8 833,195 + MPMX19_04465 0.61 -0.1 833,195 + MPMX19_04465 0.61 +0.6 833,196 - MPMX19_04465 0.61 +0.8 833,196 - MPMX19_04465 0.61 +0.2 833,196 - MPMX19_04465 0.61 -0.3 833,196 - MPMX19_04465 0.61 -1.1 833,196 - MPMX19_04465 0.61 -0.9 833,196 - MPMX19_04465 0.61 -0.1 833,196 - MPMX19_04465 0.61 -0.9 833,196 - MPMX19_04465 0.61 +0.2 833,219 + MPMX19_04465 0.63 -0.3 833,219 + MPMX19_04465 0.63 +2.4 833,219 + MPMX19_04465 0.63 +1.2 833,220 - MPMX19_04465 0.64 -0.6 833,635 + -1.6 833,636 - -0.8 833,636 - -1.0 833,636 - +0.5 833,646 + +0.5 833,646 + +0.2 833,646 + -2.7 833,646 + -1.6 833,646 + +0.0 833,647 - -0.1 833,647 - -0.9 833,647 - -0.1 833,647 - +0.4 833,727 + +0.8 833,747 + MPMX19_04466 0.17 -1.4 833,747 + MPMX19_04466 0.17 -2.0 833,748 + MPMX19_04466 0.18 -0.1 833,748 - MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 -0.9 833,748 - MPMX19_04466 0.18 -1.7 833,748 - MPMX19_04466 0.18 -0.9 833,748 - MPMX19_04466 0.18 +1.0 833,748 - MPMX19_04466 0.18 -1.1 833,874 + -1.6 833,928 + -2.1 833,928 + +1.6 833,929 - +0.0 833,929 - -0.4 833,929 - -0.5 833,929 - -1.7 833,929 - +0.5 833,929 - +0.7 833,933 + -0.1 833,933 + -1.7 833,933 + +2.0 833,934 - -1.1 833,934 - -0.4 833,934 - -3.0 833,934 - -1.4 833,934 - -0.3 833,934 - +0.4 833,934 - -0.7 833,934 - -0.0 833,990 + +1.3 833,990 + +0.2 833,991 - +0.2 833,991 - +0.9 834,098 - -1.4 834,098 - -1.1 834,098 - -1.0 834,300 + -0.8 834,301 - -0.6 834,301 - -2.5 834,301 - -1.7 834,531 + MPMX19_04468 0.17 -0.3 834,532 - MPMX19_04468 0.17 -0.4 834,532 - MPMX19_04468 0.17 +0.9 834,532 - MPMX19_04468 0.17 -0.2 834,532 - MPMX19_04468 0.17 -0.5 834,765 + MPMX19_04468 0.42 +0.9 834,765 + MPMX19_04468 0.42 -1.5 834,765 + MPMX19_04468 0.42 -1.6 834,765 + MPMX19_04468 0.42 -0.8 834,765 + MPMX19_04468 0.42 +0.3 834,765 + MPMX19_04468 0.42 -0.5 834,765 + MPMX19_04468 0.42 -2.0 834,765 + MPMX19_04468 0.42 -1.2 834,765 + MPMX19_04468 0.42 -1.2 834,765 + MPMX19_04468 0.42 +0.1 834,766 - MPMX19_04468 0.42 -0.8 834,766 - MPMX19_04468 0.42 -1.2 834,766 - MPMX19_04468 0.42 -0.6 834,766 - MPMX19_04468 0.42 -0.5 834,766 - MPMX19_04468 0.42 +1.1 834,954 + MPMX19_04468 0.63 +0.0 834,954 + MPMX19_04468 0.63 -0.3 834,955 - MPMX19_04468 0.63 -0.2 834,955 - MPMX19_04468 0.63 +0.3 834,964 + MPMX19_04468 0.64 -0.8 834,964 + MPMX19_04468 0.64 +1.4 834,964 + MPMX19_04468 0.64 +0.2 834,964 + MPMX19_04468 0.64 +0.0 834,964 + MPMX19_04468 0.64 +0.8 834,964 + MPMX19_04468 0.64 -1.6 834,964 + MPMX19_04468 0.64 +0.0 834,964 + MPMX19_04468 0.64 +0.3 834,964 + MPMX19_04468 0.64 +0.2 834,964 + MPMX19_04468 0.64 +0.5 834,964 + MPMX19_04468 0.64 -1.4 834,964 + MPMX19_04468 0.64 -0.8 834,964 + MPMX19_04468 0.64 -0.3 834,965 - MPMX19_04468 0.64 -0.8 834,965 - MPMX19_04468 0.64 +0.2 834,965 - MPMX19_04468 0.64 -0.6 834,965 - MPMX19_04468 0.64 -0.8 834,965 - MPMX19_04468 0.64 -0.1 834,965 - MPMX19_04468 0.64 +0.4 834,965 - MPMX19_04468 0.64 +2.3 834,965 - MPMX19_04468 0.64 +0.9 834,965 - MPMX19_04468 0.64 -0.6 834,965 - MPMX19_04468 0.64 -1.2 834,965 - MPMX19_04468 0.64 +0.0 834,965 - MPMX19_04468 0.64 -0.6 834,965 - MPMX19_04468 0.64 -0.6 835,006 - MPMX19_04468 0.69 +0.6 835,047 + MPMX19_04468 0.74 -3.0 835,047 + MPMX19_04468 0.74 -0.2 835,047 + MPMX19_04468 0.74 +0.6 835,047 + MPMX19_04468 0.74 +0.3 835,047 + MPMX19_04468 0.74 -0.4 835,047 + MPMX19_04468 0.74 +0.1 835,047 + MPMX19_04468 0.74 -0.6 835,047 + MPMX19_04468 0.74 -1.5 835,047 + MPMX19_04468 0.74 +0.9 835,047 + MPMX19_04468 0.74 -1.0 835,048 - MPMX19_04468 0.74 +0.6 835,048 - MPMX19_04468 0.74 -0.1 835,048 - MPMX19_04468 0.74 -1.1 835,048 - MPMX19_04468 0.74 -0.0 835,048 - MPMX19_04468 0.74 +0.3 835,048 - MPMX19_04468 0.74 -1.0 835,048 - MPMX19_04468 0.74 +0.1 835,048 - MPMX19_04468 0.74 +0.4 835,048 - MPMX19_04468 0.74 -1.1 835,048 - MPMX19_04468 0.74 -1.4 835,048 - MPMX19_04468 0.74 -0.2 835,065 + MPMX19_04468 0.75 -0.5 835,065 + MPMX19_04468 0.75 -2.0 835,066 - MPMX19_04468 0.76 -1.1 835,066 - MPMX19_04468 0.76 -1.1 835,066 - MPMX19_04468 0.76 +0.9
Or see this region's nucleotide sequence