Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04461

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04460 and MPMX19_04461 are separated by 44 nucleotidesMPMX19_04461 and MPMX19_04462 are separated by 154 nucleotides MPMX19_04460: MPMX19_04460 - Pyruvate kinase, at 827,257 to 828,723 _04460 MPMX19_04461: MPMX19_04461 - HTH-type transcriptional repressor RspR, at 828,768 to 829,457 _04461 MPMX19_04462: MPMX19_04462 - Thiamine-phosphate synthase, at 829,612 to 830,307 _04462 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 828.154 kb on + strand, within MPMX19_04460at 828.154 kb on + strand, within MPMX19_04460at 828.154 kb on + strand, within MPMX19_04460at 828.154 kb on + strand, within MPMX19_04460at 828.154 kb on + strand, within MPMX19_04460at 828.154 kb on + strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.155 kb on - strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.382 kb on + strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.383 kb on - strand, within MPMX19_04460at 828.678 kb on + strandat 828.678 kb on + strandat 828.678 kb on + strandat 828.678 kb on + strandat 828.678 kb on + strandat 828.679 kb on - strandat 828.679 kb on - strandat 828.679 kb on - strandat 828.679 kb on - strandat 828.702 kb on + strandat 828.703 kb on - strandat 828.703 kb on - strandat 828.703 kb on - strandat 828.703 kb on - strandat 828.747 kb on + strandat 828.747 kb on + strandat 828.747 kb on + strandat 828.747 kb on + strandat 828.747 kb on + strandat 828.748 kb on - strandat 828.748 kb on - strandat 828.748 kb on - strandat 828.769 kb on + strandat 828.769 kb on + strandat 828.770 kb on - strandat 829.042 kb on + strand, within MPMX19_04461at 829.042 kb on + strand, within MPMX19_04461at 829.043 kb on - strand, within MPMX19_04461at 829.043 kb on - strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.354 kb on + strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.355 kb on - strand, within MPMX19_04461at 829.393 kb on + strandat 829.393 kb on + strandat 829.393 kb on + strandat 829.393 kb on + strandat 829.394 kb on - strandat 829.394 kb on - strandat 829.394 kb on - strandat 829.394 kb on - strandat 829.394 kb on - strandat 829.537 kb on + strandat 829.538 kb on - strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.542 kb on + strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.543 kb on - strandat 829.546 kb on + strandat 829.546 kb on + strandat 829.546 kb on + strandat 829.546 kb on + strandat 829.546 kb on + strandat 829.547 kb on - strandat 829.547 kb on - strandat 829.601 kb on + strandat 829.601 kb on + strandat 829.601 kb on + strandat 829.601 kb on + strandat 829.602 kb on - strandat 829.602 kb on - strandat 829.841 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.886 kb on + strand, within MPMX19_04462at 829.887 kb on - strand, within MPMX19_04462at 829.887 kb on - strand, within MPMX19_04462at 829.887 kb on - strand, within MPMX19_04462at 829.887 kb on - strand, within MPMX19_04462at 829.954 kb on + strand, within MPMX19_04462at 829.955 kb on - strand, within MPMX19_04462at 829.955 kb on - strand, within MPMX19_04462at 830.376 kb on - strandat 830.376 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
828,154 + MPMX19_04460 0.61 -0.3
828,154 + MPMX19_04460 0.61 -0.2
828,154 + MPMX19_04460 0.61 -0.4
828,154 + MPMX19_04460 0.61 -1.7
828,154 + MPMX19_04460 0.61 +0.4
828,154 + MPMX19_04460 0.61 -0.9
828,155 - MPMX19_04460 0.61 -2.6
828,155 - MPMX19_04460 0.61 -0.6
828,155 - MPMX19_04460 0.61 -2.9
828,155 - MPMX19_04460 0.61 +0.0
828,155 - MPMX19_04460 0.61 +0.6
828,155 - MPMX19_04460 0.61 +0.4
828,382 + MPMX19_04460 0.77 -1.0
828,382 + MPMX19_04460 0.77 -0.3
828,382 + MPMX19_04460 0.77 -1.3
828,382 + MPMX19_04460 0.77 -1.6
828,382 + MPMX19_04460 0.77 -1.0
828,382 + MPMX19_04460 0.77 +1.0
828,382 + MPMX19_04460 0.77 -1.3
828,382 + MPMX19_04460 0.77 -0.1
828,382 + MPMX19_04460 0.77 -0.3
828,382 + MPMX19_04460 0.77 -0.1
828,383 - MPMX19_04460 0.77 +0.3
828,383 - MPMX19_04460 0.77 -2.2
828,383 - MPMX19_04460 0.77 -0.3
828,383 - MPMX19_04460 0.77 +0.4
828,383 - MPMX19_04460 0.77 -0.6
828,383 - MPMX19_04460 0.77 +0.9
828,383 - MPMX19_04460 0.77 -1.1
828,383 - MPMX19_04460 0.77 -0.7
828,383 - MPMX19_04460 0.77 +0.6
828,383 - MPMX19_04460 0.77 +0.0
828,678 + -1.0
828,678 + -0.3
828,678 + -1.7
828,678 + +0.4
828,678 + -0.8
828,679 - +0.7
828,679 - +0.6
828,679 - -0.6
828,679 - -1.1
828,702 + +0.1
828,703 - -0.3
828,703 - +0.1
828,703 - +0.7
828,703 - -1.3
828,747 + -0.3
828,747 + -0.8
828,747 + -0.3
828,747 + +2.0
828,747 + +0.7
828,748 - +0.6
828,748 - -0.8
828,748 - +0.0
828,769 + -0.7
828,769 + -1.0
828,770 - +0.6
829,042 + MPMX19_04461 0.40 -1.0
829,042 + MPMX19_04461 0.40 +0.7
829,043 - MPMX19_04461 0.40 -0.8
829,043 - MPMX19_04461 0.40 -0.3
829,354 + MPMX19_04461 0.85 -0.2
829,354 + MPMX19_04461 0.85 -0.9
829,354 + MPMX19_04461 0.85 -0.6
829,354 + MPMX19_04461 0.85 -1.2
829,354 + MPMX19_04461 0.85 -1.3
829,354 + MPMX19_04461 0.85 -1.7
829,354 + MPMX19_04461 0.85 -0.3
829,355 - MPMX19_04461 0.85 -0.5
829,355 - MPMX19_04461 0.85 -0.9
829,355 - MPMX19_04461 0.85 -1.9
829,355 - MPMX19_04461 0.85 -0.4
829,355 - MPMX19_04461 0.85 -1.0
829,355 - MPMX19_04461 0.85 -1.1
829,355 - MPMX19_04461 0.85 -0.1
829,355 - MPMX19_04461 0.85 -0.3
829,355 - MPMX19_04461 0.85 -0.6
829,355 - MPMX19_04461 0.85 -0.2
829,393 + -0.6
829,393 + +0.0
829,393 + -0.8
829,393 + -0.8
829,394 - -0.6
829,394 - +0.3
829,394 - -0.3
829,394 - -0.7
829,394 - -0.6
829,537 + -1.1
829,538 - -0.6
829,542 + -1.8
829,542 + -0.4
829,542 + -1.0
829,542 + -0.6
829,542 + -2.2
829,542 + -2.5
829,542 + -0.6
829,542 + +0.0
829,542 + -2.4
829,542 + -1.6
829,543 - -0.7
829,543 - -0.7
829,543 - -2.9
829,543 - -0.1
829,543 - -1.1
829,543 - -0.0
829,543 - +0.2
829,543 - -0.0
829,543 - -0.1
829,543 - -0.6
829,546 + +0.9
829,546 + -0.3
829,546 + +0.4
829,546 + +0.4
829,546 + +0.6
829,547 - -0.7
829,547 - +0.5
829,601 + +0.4
829,601 + -1.1
829,601 + +0.3
829,601 + +0.0
829,602 - -0.6
829,602 - -0.6
829,841 + MPMX19_04462 0.33 +0.4
829,886 + MPMX19_04462 0.39 +1.6
829,886 + MPMX19_04462 0.39 -0.1
829,886 + MPMX19_04462 0.39 -0.4
829,886 + MPMX19_04462 0.39 -0.3
829,886 + MPMX19_04462 0.39 -0.1
829,886 + MPMX19_04462 0.39 -0.8
829,887 - MPMX19_04462 0.40 -0.6
829,887 - MPMX19_04462 0.40 -1.5
829,887 - MPMX19_04462 0.40 -0.3
829,887 - MPMX19_04462 0.40 -0.6
829,954 + MPMX19_04462 0.49 -0.5
829,955 - MPMX19_04462 0.49 -1.8
829,955 - MPMX19_04462 0.49 -0.6
830,376 - -0.7
830,376 - +0.9

Or see this region's nucleotide sequence