Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04353

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04352 and MPMX19_04353 are separated by 61 nucleotidesMPMX19_04353 and MPMX19_04354 are separated by 126 nucleotidesMPMX19_04354 and MPMX19_04355 overlap by 4 nucleotides MPMX19_04352: MPMX19_04352 - Voltage-gated ClC-type chloride channel ClcB, at 715,836 to 717,677 _04352 MPMX19_04353: MPMX19_04353 - hypothetical protein, at 717,739 to 719,127 _04353 MPMX19_04354: MPMX19_04354 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 719,254 to 719,955 _04354 MPMX19_04355: MPMX19_04355 - Vitamin B12 import ATP-binding protein BtuD, at 719,952 to 721,667 _04355 Position (kb) 717 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2 3at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.899 kb on + strand, within MPMX19_04352at 716.900 kb on - strand, within MPMX19_04352at 717.025 kb on + strand, within MPMX19_04352at 717.025 kb on + strand, within MPMX19_04352at 717.026 kb on - strand, within MPMX19_04352at 717.026 kb on - strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.052 kb on + strand, within MPMX19_04352at 717.053 kb on - strand, within MPMX19_04352at 717.053 kb on - strand, within MPMX19_04352at 717.053 kb on - strand, within MPMX19_04352at 717.079 kb on + strand, within MPMX19_04352at 717.079 kb on + strand, within MPMX19_04352at 717.079 kb on + strand, within MPMX19_04352at 717.079 kb on + strand, within MPMX19_04352at 717.080 kb on - strand, within MPMX19_04352at 717.080 kb on - strand, within MPMX19_04352at 717.080 kb on - strand, within MPMX19_04352at 717.080 kb on - strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.191 kb on + strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.192 kb on - strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.193 kb on + strand, within MPMX19_04352at 717.194 kb on - strand, within MPMX19_04352at 717.194 kb on - strand, within MPMX19_04352at 717.194 kb on - strand, within MPMX19_04352at 717.194 kb on - strand, within MPMX19_04352at 717.194 kb on - strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.289 kb on + strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.290 kb on - strand, within MPMX19_04352at 717.521 kb on + strandat 717.522 kb on - strandat 717.522 kb on - strandat 717.613 kb on + strandat 717.613 kb on + strandat 717.613 kb on + strandat 717.614 kb on - strandat 717.614 kb on - strandat 717.614 kb on - strandat 717.614 kb on - strandat 717.614 kb on - strandat 717.704 kb on + strandat 717.704 kb on + strandat 717.704 kb on + strandat 717.705 kb on - strandat 717.706 kb on + strandat 717.706 kb on + strandat 717.706 kb on + strandat 717.706 kb on + strandat 717.707 kb on - strandat 717.707 kb on - strandat 717.707 kb on - strandat 717.707 kb on - strandat 717.707 kb on - strandat 717.707 kb on - strandat 717.707 kb on - strandat 718.012 kb on + strand, within MPMX19_04353at 718.012 kb on + strand, within MPMX19_04353at 718.012 kb on + strand, within MPMX19_04353at 718.012 kb on + strand, within MPMX19_04353at 718.012 kb on + strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.013 kb on - strand, within MPMX19_04353at 718.083 kb on + strand, within MPMX19_04353at 718.083 kb on + strand, within MPMX19_04353at 718.084 kb on - strand, within MPMX19_04353at 718.084 kb on - strand, within MPMX19_04353at 718.084 kb on - strand, within MPMX19_04353at 718.084 kb on - strand, within MPMX19_04353at 718.084 kb on - strand, within MPMX19_04353at 718.808 kb on + strand, within MPMX19_04353at 718.808 kb on + strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 719.012 kb on + strandat 719.012 kb on + strandat 719.012 kb on + strandat 719.012 kb on + strandat 719.013 kb on - strandat 719.013 kb on - strandat 719.013 kb on - strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.016 kb on - strandat 719.016 kb on - strandat 719.135 kb on + strandat 719.135 kb on + strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.164 kb on + strandat 719.164 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.256 kb on - strandat 719.256 kb on - strandat 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.915 kb on + strandat 719.915 kb on + strandat 719.915 kb on + strandat 719.916 kb on - strandat 719.916 kb on - strandat 719.977 kb on + strandat 719.978 kb on - strandat 719.978 kb on - strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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716,899 + MPMX19_04352 0.58 +1.5
716,899 + MPMX19_04352 0.58 -0.0
716,899 + MPMX19_04352 0.58 -2.0
716,899 + MPMX19_04352 0.58 -0.4
716,899 + MPMX19_04352 0.58 -0.3
716,899 + MPMX19_04352 0.58 -0.8
716,899 + MPMX19_04352 0.58 -2.1
716,900 - MPMX19_04352 0.58 -1.3
717,025 + MPMX19_04352 0.65 +0.0
717,025 + MPMX19_04352 0.65 -0.2
717,026 - MPMX19_04352 0.65 -0.9
717,026 - MPMX19_04352 0.65 +0.7
717,052 + MPMX19_04352 0.66 +0.2
717,052 + MPMX19_04352 0.66 -1.5
717,052 + MPMX19_04352 0.66 +0.8
717,052 + MPMX19_04352 0.66 -0.6
717,052 + MPMX19_04352 0.66 +0.0
717,052 + MPMX19_04352 0.66 -0.2
717,052 + MPMX19_04352 0.66 -1.9
717,052 + MPMX19_04352 0.66 -0.8
717,052 + MPMX19_04352 0.66 +0.9
717,053 - MPMX19_04352 0.66 -0.2
717,053 - MPMX19_04352 0.66 -1.3
717,053 - MPMX19_04352 0.66 +0.4
717,079 + MPMX19_04352 0.67 -1.2
717,079 + MPMX19_04352 0.67 -1.1
717,079 + MPMX19_04352 0.67 +0.5
717,079 + MPMX19_04352 0.67 -0.1
717,080 - MPMX19_04352 0.68 +0.6
717,080 - MPMX19_04352 0.68 +0.2
717,080 - MPMX19_04352 0.68 +0.3
717,080 - MPMX19_04352 0.68 -0.4
717,191 + MPMX19_04352 0.74 +0.7
717,191 + MPMX19_04352 0.74 +0.6
717,191 + MPMX19_04352 0.74 +1.0
717,191 + MPMX19_04352 0.74 -0.5
717,191 + MPMX19_04352 0.74 +0.3
717,191 + MPMX19_04352 0.74 -0.5
717,191 + MPMX19_04352 0.74 +0.0
717,191 + MPMX19_04352 0.74 +0.6
717,191 + MPMX19_04352 0.74 -0.8
717,191 + MPMX19_04352 0.74 -0.2
717,191 + MPMX19_04352 0.74 +0.5
717,191 + MPMX19_04352 0.74 +0.6
717,191 + MPMX19_04352 0.74 -0.8
717,191 + MPMX19_04352 0.74 +0.8
717,191 + MPMX19_04352 0.74 +0.2
717,191 + MPMX19_04352 0.74 -0.2
717,191 + MPMX19_04352 0.74 -0.9
717,191 + MPMX19_04352 0.74 -1.3
717,192 - MPMX19_04352 0.74 +0.3
717,192 - MPMX19_04352 0.74 +0.0
717,192 - MPMX19_04352 0.74 -1.1
717,192 - MPMX19_04352 0.74 -0.5
717,192 - MPMX19_04352 0.74 -0.2
717,192 - MPMX19_04352 0.74 -0.2
717,192 - MPMX19_04352 0.74 -1.3
717,192 - MPMX19_04352 0.74 +0.6
717,192 - MPMX19_04352 0.74 -1.7
717,192 - MPMX19_04352 0.74 -0.0
717,192 - MPMX19_04352 0.74 +0.5
717,192 - MPMX19_04352 0.74 -0.1
717,192 - MPMX19_04352 0.74 -1.1
717,192 - MPMX19_04352 0.74 +0.2
717,192 - MPMX19_04352 0.74 -2.4
717,193 + MPMX19_04352 0.74 -0.2
717,193 + MPMX19_04352 0.74 +0.4
717,193 + MPMX19_04352 0.74 +0.2
717,193 + MPMX19_04352 0.74 -2.3
717,193 + MPMX19_04352 0.74 -0.1
717,193 + MPMX19_04352 0.74 +1.1
717,193 + MPMX19_04352 0.74 -0.9
717,194 - MPMX19_04352 0.74 -1.0
717,194 - MPMX19_04352 0.74 -0.6
717,194 - MPMX19_04352 0.74 +0.4
717,194 - MPMX19_04352 0.74 -0.5
717,194 - MPMX19_04352 0.74 -0.5
717,289 + MPMX19_04352 0.79 +0.6
717,289 + MPMX19_04352 0.79 +0.6
717,289 + MPMX19_04352 0.79 -0.3
717,289 + MPMX19_04352 0.79 +0.3
717,289 + MPMX19_04352 0.79 -0.1
717,289 + MPMX19_04352 0.79 -0.0
717,289 + MPMX19_04352 0.79 -1.0
717,289 + MPMX19_04352 0.79 -0.5
717,289 + MPMX19_04352 0.79 -1.0
717,289 + MPMX19_04352 0.79 +0.7
717,289 + MPMX19_04352 0.79 -1.1
717,290 - MPMX19_04352 0.79 -0.5
717,290 - MPMX19_04352 0.79 +0.7
717,290 - MPMX19_04352 0.79 +0.5
717,290 - MPMX19_04352 0.79 +0.1
717,290 - MPMX19_04352 0.79 +0.1
717,290 - MPMX19_04352 0.79 +0.8
717,290 - MPMX19_04352 0.79 +0.7
717,290 - MPMX19_04352 0.79 +1.0
717,290 - MPMX19_04352 0.79 -0.3
717,290 - MPMX19_04352 0.79 -0.0
717,521 + -0.5
717,522 - +0.0
717,522 - -0.1
717,613 + -0.0
717,613 + +0.5
717,613 + +0.5
717,614 - +0.2
717,614 - -1.7
717,614 - -0.9
717,614 - +0.5
717,614 - -1.3
717,704 + -0.4
717,704 + -0.7
717,704 + -1.4
717,705 - +0.6
717,706 + +0.8
717,706 + -0.9
717,706 + +1.0
717,706 + +0.8
717,707 - -1.1
717,707 - -1.0
717,707 - -1.5
717,707 - -0.3
717,707 - +0.4
717,707 - +0.8
717,707 - +0.0
718,012 + MPMX19_04353 0.20 -0.8
718,012 + MPMX19_04353 0.20 -0.5
718,012 + MPMX19_04353 0.20 -1.5
718,012 + MPMX19_04353 0.20 +0.0
718,012 + MPMX19_04353 0.20 +2.0
718,013 - MPMX19_04353 0.20 -0.8
718,013 - MPMX19_04353 0.20 -0.8
718,013 - MPMX19_04353 0.20 -0.5
718,013 - MPMX19_04353 0.20 +0.8
718,013 - MPMX19_04353 0.20 -1.5
718,013 - MPMX19_04353 0.20 -1.1
718,013 - MPMX19_04353 0.20 +0.8
718,013 - MPMX19_04353 0.20 -0.0
718,013 - MPMX19_04353 0.20 +0.8
718,013 - MPMX19_04353 0.20 +0.2
718,013 - MPMX19_04353 0.20 -1.5
718,013 - MPMX19_04353 0.20 -1.0
718,013 - MPMX19_04353 0.20 -1.9
718,083 + MPMX19_04353 0.25 +0.5
718,083 + MPMX19_04353 0.25 +0.2
718,084 - MPMX19_04353 0.25 -1.8
718,084 - MPMX19_04353 0.25 -1.1
718,084 - MPMX19_04353 0.25 -0.6
718,084 - MPMX19_04353 0.25 +0.6
718,084 - MPMX19_04353 0.25 -0.8
718,808 + MPMX19_04353 0.77 -1.1
718,808 + MPMX19_04353 0.77 -0.1
718,809 - MPMX19_04353 0.77 -1.7
718,809 - MPMX19_04353 0.77 +0.8
718,809 - MPMX19_04353 0.77 -0.2
718,809 - MPMX19_04353 0.77 -0.3
719,012 + +1.0
719,012 + -1.8
719,012 + -0.9
719,012 + -1.7
719,013 - -0.3
719,013 - +1.0
719,013 - +0.5
719,015 + -1.5
719,015 + -0.8
719,015 + +0.5
719,015 + +0.2
719,015 + +0.3
719,015 + +0.3
719,016 - +1.0
719,016 - -0.3
719,135 + +0.0
719,135 + +0.0
719,136 - +0.2
719,136 - +0.2
719,136 - +0.0
719,136 - -0.7
719,164 + +1.2
719,164 + +0.2
719,243 + +0.2
719,243 + -1.0
719,243 + -0.6
719,243 + -1.3
719,243 + -0.6
719,243 + +0.4
719,243 + -0.5
719,244 - +1.0
719,244 - -1.0
719,244 - -1.2
719,244 - -0.3
719,244 - +0.5
719,244 - +0.5
719,244 - +0.5
719,244 - +0.0
719,244 - -0.5
719,244 - -0.5
719,244 - -0.1
719,244 - +0.6
719,256 - -1.2
719,256 - -0.1
719,711 + MPMX19_04354 0.65 -2.0
719,711 + MPMX19_04354 0.65 -1.1
719,711 + MPMX19_04354 0.65 +1.0
719,711 + MPMX19_04354 0.65 -0.8
719,711 + MPMX19_04354 0.65 -1.4
719,711 + MPMX19_04354 0.65 +0.0
719,712 - MPMX19_04354 0.65 +3.0
719,712 - MPMX19_04354 0.65 -1.1
719,712 - MPMX19_04354 0.65 -0.4
719,712 - MPMX19_04354 0.65 -0.5
719,915 + +0.8
719,915 + +0.2
719,915 + +0.5
719,916 - -0.7
719,916 - -0.5
719,977 + +0.4
719,978 - -1.2
719,978 - +1.7
720,028 + -2.0
720,028 + -0.0
720,028 + -2.0
720,028 + +0.0
720,028 + +0.3
720,028 + -0.7
720,028 + -0.3
720,028 + +1.8
720,028 + -0.4
720,028 + -0.3
720,028 + -0.7
720,028 + -0.3
720,028 + +1.3
720,028 + -2.0
720,028 + +0.3
720,028 + +1.2
720,028 + -0.2
720,028 + -0.2
720,028 + -0.1
720,029 - +0.0
720,029 - -0.6
720,029 - -0.0
720,029 - -0.8
720,029 - +0.0
720,029 - -0.0
720,029 - -1.1
720,029 - +0.2
720,029 - +1.3
720,029 - +0.8
720,029 - -1.4

Or see this region's nucleotide sequence