Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04260 and MPMX19_04261 are separated by 4 nucleotides MPMX19_04261 and MPMX19_04262 are separated by 48 nucleotides MPMX19_04262 and MPMX19_04263 are separated by 111 nucleotides
MPMX19_04260: MPMX19_04260 - Acetyl-coenzyme A synthetase, at 620,118 to 621,734
_04260
MPMX19_04261: MPMX19_04261 - putative membrane transporter protein YfcA, at 621,739 to 622,476
_04261
MPMX19_04262: MPMX19_04262 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 622,525 to 623,229
_04262
MPMX19_04263: MPMX19_04263 - hypothetical protein, at 623,341 to 624,348
_04263
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.735 kb on + strand at 621.735 kb on + strand at 621.735 kb on + strand at 621.736 kb on - strand at 621.736 kb on - strand at 621.756 kb on - strand at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.895 kb on + strand, within MPMX19_04261 at 621.895 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.911 kb on - strand, within MPMX19_04261 at 622.168 kb on + strand, within MPMX19_04261 at 622.168 kb on + strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.177 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.307 kb on - strand, within MPMX19_04261 at 622.307 kb on - strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.376 kb on - strand, within MPMX19_04261 at 622.460 kb on + strand at 622.461 kb on - strand at 622.461 kb on - strand at 622.483 kb on + strand at 622.484 kb on - strand at 622.484 kb on - strand at 622.484 kb on - strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.254 kb on + strand at 623.254 kb on + strand at 623.254 kb on + strand at 623.255 kb on - strand at 623.263 kb on + strand at 623.264 kb on - strand at 623.271 kb on + strand at 623.271 kb on + strand at 623.272 kb on - strand at 623.281 kb on + strand at 623.283 kb on + strand at 623.283 kb on + strand at 623.284 kb on - strand at 623.295 kb on - strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.306 kb on - strand at 623.306 kb on - strand at 623.306 kb on - strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.678 kb on - strand, within MPMX19_04263 at 623.678 kb on - strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.029 kb on - strand, within MPMX19_04263
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 621,735 + -1.5 621,735 + +0.0 621,735 + +0.1 621,736 - +0.0 621,736 - -0.2 621,756 - -0.3 621,835 + MPMX19_04261 0.13 -0.4 621,835 + MPMX19_04261 0.13 -1.1 621,835 + MPMX19_04261 0.13 +0.7 621,835 + MPMX19_04261 0.13 -0.4 621,835 + MPMX19_04261 0.13 -0.2 621,835 + MPMX19_04261 0.13 -1.5 621,835 + MPMX19_04261 0.13 -0.5 621,835 + MPMX19_04261 0.13 -1.3 621,835 + MPMX19_04261 0.13 -1.9 621,836 - MPMX19_04261 0.13 -0.4 621,836 - MPMX19_04261 0.13 +0.2 621,836 - MPMX19_04261 0.13 +0.3 621,836 - MPMX19_04261 0.13 +0.5 621,836 - MPMX19_04261 0.13 +0.6 621,836 - MPMX19_04261 0.13 -1.4 621,895 + MPMX19_04261 0.21 -0.6 621,895 + MPMX19_04261 0.21 -1.2 621,910 + MPMX19_04261 0.23 -0.6 621,910 + MPMX19_04261 0.23 -0.8 621,910 + MPMX19_04261 0.23 +0.6 621,910 + MPMX19_04261 0.23 +0.2 621,911 - MPMX19_04261 0.23 +0.3 622,168 + MPMX19_04261 0.58 +0.7 622,168 + MPMX19_04261 0.58 +0.3 622,169 - MPMX19_04261 0.58 +0.5 622,169 - MPMX19_04261 0.58 -0.7 622,169 - MPMX19_04261 0.58 +0.8 622,169 - MPMX19_04261 0.58 +0.1 622,169 - MPMX19_04261 0.58 -0.8 622,169 - MPMX19_04261 0.58 -1.4 622,169 - MPMX19_04261 0.58 -1.1 622,177 + MPMX19_04261 0.59 +0.2 622,306 + MPMX19_04261 0.77 +0.0 622,306 + MPMX19_04261 0.77 -0.2 622,306 + MPMX19_04261 0.77 +1.0 622,306 + MPMX19_04261 0.77 -0.7 622,306 + MPMX19_04261 0.77 +0.5 622,307 - MPMX19_04261 0.77 +0.3 622,307 - MPMX19_04261 0.77 -0.3 622,375 + MPMX19_04261 0.86 +0.2 622,375 + MPMX19_04261 0.86 -1.4 622,375 + MPMX19_04261 0.86 +0.9 622,375 + MPMX19_04261 0.86 +0.3 622,376 - MPMX19_04261 0.86 +0.0 622,460 + -0.1 622,461 - -1.7 622,461 - -0.8 622,483 + +0.3 622,484 - -1.0 622,484 - -0.6 622,484 - -1.4 622,485 + -0.8 622,485 + -1.1 622,485 + +0.0 622,485 + +0.5 622,485 + +0.0 622,486 - +1.0 622,486 - +0.8 622,486 - +1.0 622,486 - +1.5 622,486 - +0.0 622,486 - -0.2 622,486 - -0.9 622,486 - -0.8 622,486 - +0.5 622,552 + -0.1 622,552 + -1.3 622,552 + -0.2 622,552 + +0.5 622,552 + +1.0 622,552 + +0.1 622,552 + -0.5 622,552 + -0.7 622,552 + +1.0 622,552 + -0.3 622,552 + -0.4 622,552 + -1.0 622,552 + +0.3 622,552 + -1.3 622,552 + -0.7 622,552 + -1.5 622,552 + +0.8 622,552 + -1.5 622,552 + -0.3 622,552 + -0.4 622,552 + -1.0 622,553 - -1.8 622,553 - -1.7 622,553 - -0.3 622,553 - -0.2 622,553 - +1.3 622,553 - +0.0 622,553 - -0.8 622,553 - -1.3 622,553 - -1.3 622,553 - +0.1 622,553 - +0.5 622,553 - +1.6 622,553 - -1.5 622,553 - +0.0 622,553 - +0.0 622,555 + -1.0 622,555 + +0.8 622,555 + +0.3 622,555 + -1.8 622,555 + -0.7 622,555 + +0.2 622,555 + -0.1 622,555 + -1.3 622,555 + -0.7 622,555 + +0.5 622,555 + -2.2 622,555 + +0.2 622,555 + -1.3 622,555 + -0.8 622,555 + +0.9 622,555 + -0.5 622,555 + +0.4 622,556 - +0.7 622,556 - +0.0 622,556 - -2.0 622,556 - -1.1 622,556 - -1.1 622,556 - -0.2 622,556 - -1.5 622,556 - -0.3 622,556 - +0.2 622,556 - -0.8 622,556 - -0.8 622,556 - -0.5 622,864 + MPMX19_04262 0.48 +1.3 622,864 + MPMX19_04262 0.48 -1.3 622,864 + MPMX19_04262 0.48 +1.2 622,864 + MPMX19_04262 0.48 +0.5 622,864 + MPMX19_04262 0.48 -0.1 622,865 - MPMX19_04262 0.48 +0.2 622,865 - MPMX19_04262 0.48 -0.3 622,865 - MPMX19_04262 0.48 +2.0 622,865 - MPMX19_04262 0.48 +0.2 622,865 - MPMX19_04262 0.48 +0.7 622,865 - MPMX19_04262 0.48 +0.4 622,865 - MPMX19_04262 0.48 +0.0 623,137 + MPMX19_04262 0.87 +0.0 623,137 + MPMX19_04262 0.87 -0.8 623,137 + MPMX19_04262 0.87 +0.3 623,137 + MPMX19_04262 0.87 +0.6 623,137 + MPMX19_04262 0.87 +0.4 623,137 + MPMX19_04262 0.87 +0.5 623,137 + MPMX19_04262 0.87 -0.9 623,137 + MPMX19_04262 0.87 -0.5 623,137 + MPMX19_04262 0.87 -0.3 623,137 + MPMX19_04262 0.87 -1.2 623,137 + MPMX19_04262 0.87 +1.2 623,137 + MPMX19_04262 0.87 -1.3 623,137 + MPMX19_04262 0.87 +1.1 623,138 - MPMX19_04262 0.87 +0.3 623,138 - MPMX19_04262 0.87 -0.3 623,138 - MPMX19_04262 0.87 -1.0 623,138 - MPMX19_04262 0.87 +0.0 623,215 + +0.3 623,215 + -0.1 623,215 + -1.1 623,215 + -0.8 623,215 + +0.0 623,215 + -1.1 623,215 + -0.4 623,215 + +0.3 623,215 + -2.0 623,215 + -1.5 623,216 - -0.3 623,216 - -1.0 623,216 - -0.5 623,216 - -0.6 623,254 + +0.7 623,254 + +1.1 623,254 + -2.1 623,255 - -1.0 623,263 + +1.2 623,264 - -0.8 623,271 + +0.0 623,271 + +1.2 623,272 - -0.5 623,281 + -0.8 623,283 + -2.1 623,283 + -1.0 623,284 - -0.3 623,295 - -1.4 623,305 + -0.2 623,305 + +0.6 623,305 + -1.5 623,305 + +1.5 623,305 + -0.9 623,306 - -1.3 623,306 - +0.5 623,306 - -1.1 623,355 + -0.9 623,355 + -0.1 623,355 + -0.2 623,355 + +0.8 623,356 - +0.2 623,356 - -1.7 623,356 - -0.5 623,356 - -1.5 623,356 - +1.4 623,356 - -1.0 623,356 - -2.1 623,356 - +0.5 623,356 - -0.9 623,356 - +0.4 623,356 - -0.1 623,356 - -0.9 623,356 - -0.6 623,356 - -0.1 623,678 - MPMX19_04263 0.33 +1.0 623,678 - MPMX19_04263 0.33 -1.0 623,920 + MPMX19_04263 0.57 -1.5 623,920 + MPMX19_04263 0.57 -1.4 623,920 + MPMX19_04263 0.57 -0.9 623,920 + MPMX19_04263 0.57 +1.3 623,920 + MPMX19_04263 0.57 -1.0 623,921 - MPMX19_04263 0.58 +1.4 623,921 - MPMX19_04263 0.58 +0.0 623,921 - MPMX19_04263 0.58 +0.8 623,921 - MPMX19_04263 0.58 -0.4 623,921 - MPMX19_04263 0.58 -1.0 623,921 - MPMX19_04263 0.58 +0.1 623,921 - MPMX19_04263 0.58 -0.2 623,921 - MPMX19_04263 0.58 -1.1 623,921 - MPMX19_04263 0.58 +1.5 623,921 - MPMX19_04263 0.58 -1.5 623,921 - MPMX19_04263 0.58 +0.4 623,921 - MPMX19_04263 0.58 +0.5 623,921 - MPMX19_04263 0.58 -0.4 624,028 + MPMX19_04263 0.68 +0.5 624,028 + MPMX19_04263 0.68 -0.5 624,028 + MPMX19_04263 0.68 +0.5 624,028 + MPMX19_04263 0.68 -1.4 624,028 + MPMX19_04263 0.68 -1.0 624,029 - MPMX19_04263 0.68 -1.1
Or see this region's nucleotide sequence