Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04224 and MPMX19_04225 are separated by 210 nucleotides MPMX19_04225 and MPMX19_04226 are separated by 99 nucleotides MPMX19_04226 and MPMX19_04227 are separated by 21 nucleotides MPMX19_04227 and MPMX19_04228 are separated by 187 nucleotides
MPMX19_04224: MPMX19_04224 - hypothetical protein, at 567,055 to 569,667
_04224
MPMX19_04225: MPMX19_04225 - hypothetical protein, at 569,878 to 571,359
_04225
MPMX19_04226: MPMX19_04226 - hypothetical protein, at 571,459 to 571,797
_04226
MPMX19_04227: MPMX19_04227 - hypothetical protein, at 571,819 to 572,067
_04227
MPMX19_04228: MPMX19_04228 - hypothetical protein, at 572,255 to 573,847
_04228
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.252 kb on + strand, within MPMX19_04224 at 569.273 kb on + strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.561 kb on + strand at 569.561 kb on + strand at 569.562 kb on - strand at 569.562 kb on - strand at 569.712 kb on - strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.767 kb on + strand at 569.768 kb on - strand at 569.814 kb on - strand at 569.828 kb on + strand at 569.828 kb on + strand at 569.828 kb on + strand at 569.829 kb on - strand at 569.880 kb on - strand at 569.993 kb on + strand at 569.994 kb on - strand at 569.994 kb on - strand at 570.237 kb on + strand, within MPMX19_04225 at 570.434 kb on + strand, within MPMX19_04225 at 570.434 kb on + strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.654 kb on - strand, within MPMX19_04225 at 571.353 kb on + strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.360 kb on - strand at 571.360 kb on - strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 569,252 + MPMX19_04224 0.84 -1.2 569,273 + MPMX19_04224 0.85 -0.2 569,274 - MPMX19_04224 0.85 +0.2 569,274 - MPMX19_04224 0.85 -0.7 569,274 - MPMX19_04224 0.85 -0.4 569,274 - MPMX19_04224 0.85 -1.2 569,312 + MPMX19_04224 0.86 -0.0 569,312 + MPMX19_04224 0.86 -0.8 569,312 + MPMX19_04224 0.86 -0.5 569,312 + MPMX19_04224 0.86 -1.3 569,312 + MPMX19_04224 0.86 -0.0 569,312 + MPMX19_04224 0.86 -1.7 569,312 + MPMX19_04224 0.86 +0.2 569,313 - MPMX19_04224 0.86 -0.4 569,313 - MPMX19_04224 0.86 +0.2 569,313 - MPMX19_04224 0.86 -1.5 569,313 - MPMX19_04224 0.86 -0.4 569,313 - MPMX19_04224 0.86 +0.5 569,313 - MPMX19_04224 0.86 +1.3 569,313 - MPMX19_04224 0.86 +0.9 569,313 - MPMX19_04224 0.86 -0.9 569,313 - MPMX19_04224 0.86 -1.3 569,313 - MPMX19_04224 0.86 -0.4 569,313 - MPMX19_04224 0.86 -0.2 569,313 - MPMX19_04224 0.86 -1.3 569,313 - MPMX19_04224 0.86 -0.4 569,313 - MPMX19_04224 0.86 -1.6 569,561 + -2.0 569,561 + +1.7 569,562 - -0.0 569,562 - -2.4 569,712 - +0.2 569,715 + -1.7 569,715 + +0.2 569,715 + -2.2 569,715 + +1.6 569,715 + -0.9 569,715 + +0.4 569,715 + -2.0 569,716 - +0.5 569,716 - +0.3 569,716 - -2.4 569,716 - -1.0 569,716 - -0.0 569,716 - -1.6 569,716 - -0.6 569,767 + +0.2 569,768 - -0.7 569,814 - -0.6 569,828 + -0.8 569,828 + -1.7 569,828 + -0.3 569,829 - +0.2 569,880 - -0.8 569,993 + -0.7 569,994 - -1.3 569,994 - +0.5 570,237 + MPMX19_04225 0.24 -0.4 570,434 + MPMX19_04225 0.38 +0.2 570,434 + MPMX19_04225 0.38 -1.9 570,435 - MPMX19_04225 0.38 -1.2 570,435 - MPMX19_04225 0.38 -0.5 570,435 - MPMX19_04225 0.38 -1.4 570,435 - MPMX19_04225 0.38 -0.8 570,435 - MPMX19_04225 0.38 -2.4 570,435 - MPMX19_04225 0.38 -1.0 570,581 + MPMX19_04225 0.47 +0.2 570,581 + MPMX19_04225 0.47 +0.9 570,581 + MPMX19_04225 0.47 -0.8 570,582 - MPMX19_04225 0.48 -2.1 570,582 - MPMX19_04225 0.48 +0.2 570,582 - MPMX19_04225 0.48 -1.4 570,582 - MPMX19_04225 0.48 -1.8 570,582 - MPMX19_04225 0.48 -1.9 570,653 + MPMX19_04225 0.52 -0.1 570,653 + MPMX19_04225 0.52 -0.5 570,654 - MPMX19_04225 0.52 -1.1 571,353 + +0.2 571,354 - -0.3 571,354 - -0.3 571,354 - -1.3 571,354 - +1.0 571,359 + -0.5 571,359 + -0.1 571,359 + -1.1 571,359 + -0.2 571,360 - +1.8 571,360 - -1.0 571,371 + -0.2 571,371 + -0.6 571,371 + -1.3 571,371 + +0.3 571,371 + +0.1 571,371 + -1.3 571,371 + +0.5 571,371 + +0.5 571,371 + -1.4 571,372 - +0.5 571,372 - +0.8 571,372 - -1.4 571,372 - +0.9 571,372 - -1.0 571,372 - -2.6 571,372 - -3.2 571,372 - -0.1 571,702 + MPMX19_04226 0.72 -1.0 571,702 + MPMX19_04226 0.72 +0.6 571,702 + MPMX19_04226 0.72 +0.0 571,702 + MPMX19_04226 0.72 -0.0 571,702 + MPMX19_04226 0.72 -0.5 571,703 - MPMX19_04226 0.72 -1.1 571,703 - MPMX19_04226 0.72 +1.2 571,703 - MPMX19_04226 0.72 -0.4 571,703 - MPMX19_04226 0.72 +0.0 571,703 - MPMX19_04226 0.72 +0.3 571,703 - MPMX19_04226 0.72 -0.7 571,703 - MPMX19_04226 0.72 +0.7 571,703 - MPMX19_04226 0.72 +0.5 571,703 - MPMX19_04226 0.72 +0.0 571,703 - MPMX19_04226 0.72 -0.5 571,703 - MPMX19_04226 0.72 -1.0 571,703 - MPMX19_04226 0.72 +0.6 571,723 + MPMX19_04226 0.78 -2.3 571,723 + MPMX19_04226 0.78 -1.9 571,723 + MPMX19_04226 0.78 -1.5 572,256 + -0.8 572,256 + -0.6 572,256 + +0.6 572,256 + -0.3 572,256 + -1.3 572,257 - +0.7 572,257 - -0.2 572,257 - -0.1 572,257 - -0.9 572,257 - -1.0
Or see this region's nucleotide sequence